Wall clock time and date at job start Tue Mar 31 2020 06:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47080 * 2 1 4 4 C 1.53000 * 109.47266 * 239.99645 * 2 1 3 5 5 C 1.50704 * 109.46912 * 119.99382 * 2 1 3 6 6 C 1.37973 * 120.07479 * 3.96966 * 5 2 1 7 7 C 1.38337 * 120.14618 * 179.97438 * 6 5 2 8 8 C 1.38383 * 120.29076 * 0.02562 * 7 6 5 9 9 C 1.37939 * 120.14388 * 359.74289 * 8 7 6 10 10 C 1.39559 * 120.06997 * 183.94209 * 5 2 1 11 11 C 1.47842 * 120.14562 * 0.02562 * 10 5 2 12 12 O 1.21552 * 120.00416 * 353.48369 * 11 10 5 13 13 N 1.34780 * 119.99943 * 173.48088 * 11 10 5 14 14 C 1.46503 * 119.99912 * 179.72803 * 13 11 10 15 15 C 1.53002 * 109.46919 * 180.27189 * 14 13 11 16 16 C 1.52997 * 109.46813 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46981 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00198 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99973 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99835 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47020 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46919 * 119.99637 * 21 19 17 24 24 H 1.48492 * 109.47069 * 239.99889 * 21 19 17 25 25 H 1.09001 * 109.46929 * 300.00314 * 1 2 3 26 26 H 1.08997 * 109.46981 * 60.00157 * 1 2 3 27 27 H 1.09001 * 109.46771 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47001 * 146.36334 * 3 2 1 29 29 H 1.09001 * 109.46916 * 266.36626 * 3 2 1 30 30 H 1.09001 * 109.46849 * 26.36082 * 3 2 1 31 31 H 1.08997 * 109.46991 * 331.31451 * 4 2 1 32 32 H 1.09006 * 109.46839 * 91.31231 * 4 2 1 33 33 H 1.08995 * 109.46788 * 211.31259 * 4 2 1 34 34 H 1.07998 * 119.92853 * 359.97438 * 6 5 2 35 35 H 1.08001 * 119.85611 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.92409 * 179.97438 * 8 7 6 37 37 H 1.08005 * 120.07149 * 180.27758 * 9 8 7 38 38 H 0.97004 * 119.99844 * 359.97438 * 13 11 10 39 39 H 1.08996 * 109.47231 * 300.27071 * 14 13 11 40 40 H 1.08995 * 109.47194 * 60.27546 * 14 13 11 41 41 H 1.08996 * 109.47073 * 299.99979 * 15 14 13 42 42 H 1.08995 * 109.46896 * 60.00174 * 15 14 13 43 43 H 1.08996 * 109.47351 * 299.99891 * 16 15 14 44 44 H 1.08995 * 109.47180 * 60.00430 * 16 15 14 45 45 H 0.96999 * 119.99273 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2306 6 6 1.1398 -1.3062 2.0977 7 6 1.5993 -1.9591 3.2274 8 6 2.9555 -2.0187 3.4961 9 6 3.8587 -1.4312 2.6349 10 6 3.4014 -0.7672 1.4953 11 6 4.3635 -0.1309 0.5705 12 8 3.9756 0.3396 -0.4810 13 7 5.6708 -0.0725 0.8934 14 6 6.6250 0.5528 -0.0258 15 6 8.0313 0.4812 0.5728 16 6 9.0279 1.1335 -0.3874 17 6 10.4132 1.0625 0.2018 18 1 10.5673 0.5988 1.1649 19 6 11.4838 1.5904 -0.4883 20 7 11.2961 2.1555 -1.6609 21 14 13.2007 1.5029 0.2424 22 1 13.1433 0.8235 1.5616 23 1 14.0887 0.7388 -0.6703 24 1 13.7350 2.8774 0.4169 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.9678 1.4999 0.5692 29 1 2.2226 1.7634 -1.0256 30 1 1.2930 2.0920 0.4563 31 1 1.3113 -1.4700 -1.5594 32 1 2.1834 0.0011 -2.0528 33 1 2.9889 -1.2087 -1.0252 34 1 0.0801 -1.2629 1.8940 35 1 0.8965 -2.4243 3.9028 36 1 3.3077 -2.5296 4.3800 37 1 4.9172 -1.4823 2.8433 38 1 5.9803 -0.4476 1.7327 39 1 6.6090 0.0260 -0.9799 40 1 6.3493 1.5957 -0.1818 41 1 8.0473 1.0079 1.5269 42 1 8.3071 -0.5617 0.7288 43 1 9.0118 0.6064 -1.3413 44 1 8.7524 2.1764 -0.5438 45 1 12.0494 2.5265 -2.1465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167009016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:58 Heat of formation + Delta-G solvation = -30.587133 kcal Electronic energy + Delta-G solvation = -22964.126182 eV Core-core repulsion = 19752.788437 eV Total energy + Delta-G solvation = -3211.337745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94727 -39.43461 -37.67081 -36.58430 -35.11833 -33.28363 -31.99873 -30.98472 -28.65550 -28.14730 -28.06151 -25.56287 -23.99777 -23.75474 -22.30810 -21.28418 -20.08826 -18.87481 -18.47110 -17.12755 -16.89823 -16.54599 -16.46348 -15.89220 -15.78122 -15.63713 -15.26336 -15.02671 -14.71897 -14.35670 -13.94998 -13.81629 -13.75649 -13.23045 -13.16670 -12.86287 -12.82111 -12.66809 -12.56753 -12.38138 -12.34822 -12.13511 -11.74858 -11.65451 -11.60367 -11.52431 -11.38610 -11.19625 -10.57329 -10.48211 -9.98686 -9.82955 -9.61814 -8.20744 -6.32261 -0.06495 0.45022 1.40970 1.41104 1.54422 1.94327 2.21440 2.42013 2.91507 3.13116 3.63364 3.72701 3.86262 4.07482 4.18411 4.19881 4.21741 4.25244 4.40803 4.52095 4.53739 4.55488 4.79489 4.82122 4.89542 4.91372 4.93000 4.93281 5.00380 5.10179 5.15147 5.19207 5.19845 5.26934 5.41608 5.47407 5.48311 5.50633 5.54810 5.58241 5.69064 5.74114 5.82834 6.00790 6.21130 6.60214 6.85374 7.27426 7.37474 8.91620 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026600 B = 0.003003 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.365002 B = 9322.024367 C =10161.613903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.025 4.025 3 C -0.114 4.114 4 C -0.109 4.109 5 C -0.028 4.028 6 C -0.137 4.137 7 C -0.087 4.087 8 C -0.134 4.134 9 C -0.091 4.091 10 C -0.155 4.155 11 C 0.534 3.466 12 O -0.541 6.541 13 N -0.716 5.716 14 C 0.135 3.865 15 C -0.102 4.102 16 C 0.025 3.975 17 C -0.540 4.540 18 H 0.066 0.934 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.258 1.258 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.139 0.861 38 H 0.409 0.591 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.066 0.934 43 H -0.008 1.008 44 H -0.008 1.008 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.478 -9.588 11.757 27.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 C -0.171 4.171 4 C -0.167 4.167 5 C -0.029 4.029 6 C -0.154 4.154 7 C -0.105 4.105 8 C -0.152 4.152 9 C -0.109 4.109 10 C -0.158 4.158 11 C 0.323 3.677 12 O -0.420 6.420 13 N -0.369 5.369 14 C 0.011 3.989 15 C -0.140 4.140 16 C -0.013 4.013 17 C -0.578 4.578 18 H 0.084 0.916 19 C -0.201 4.201 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.182 1.182 23 H -0.205 1.205 24 H -0.206 1.206 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.170 0.830 35 H 0.175 0.825 36 H 0.172 0.828 37 H 0.157 0.843 38 H 0.246 0.754 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.641 -9.159 10.865 27.583 hybrid contribution 1.564 0.271 -0.063 1.589 sum -22.076 -8.888 10.802 26.135 Atomic orbital electron populations 1.22036 0.92447 1.02605 1.02477 1.19467 0.96137 0.94740 0.92147 1.22004 0.99452 0.94408 1.01234 1.21868 0.99585 0.99238 0.95968 1.20198 0.91663 0.95347 0.95695 1.21452 1.00745 0.98580 0.94654 1.21769 0.96277 0.96098 0.96392 1.21454 0.93308 1.00175 1.00263 1.21565 1.01145 0.95571 0.92639 1.19773 0.93596 1.04738 0.97668 1.18662 0.82430 0.79864 0.86742 1.90882 1.77871 1.47233 1.26062 1.45942 1.06884 1.60411 1.23648 1.21181 0.88286 0.96890 0.92526 1.21597 0.91764 1.01289 0.99357 1.18931 0.93634 0.94464 0.94275 1.21708 0.93425 1.37647 1.05052 0.91577 1.26032 1.04033 0.94804 0.95274 1.70121 1.32628 1.39901 1.14897 0.85359 0.78680 0.77909 0.78855 1.18171 1.20538 1.20560 0.91436 0.92155 0.91111 0.93800 0.93834 0.93717 0.93333 0.93851 0.93868 0.83035 0.82497 0.82787 0.84346 0.75398 0.93218 0.93242 0.91529 0.91488 0.98982 0.98997 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 6.77 71.98 0.49 -1.79 16 2 C -0.02 -0.58 0.75 -52.92 -0.04 -0.62 16 3 C -0.11 -3.12 7.54 71.98 0.54 -2.58 16 4 C -0.11 -2.92 7.57 71.98 0.54 -2.38 16 5 C -0.03 -0.62 4.73 -19.61 -0.09 -0.72 16 6 C -0.14 -2.19 8.98 22.23 0.20 -1.99 16 7 C -0.09 -1.11 10.04 22.33 0.22 -0.88 16 8 C -0.13 -1.85 10.03 22.23 0.22 -1.63 16 9 C -0.09 -1.68 9.52 22.53 0.21 -1.46 16 10 C -0.15 -3.78 5.31 -20.09 -0.11 -3.88 16 11 C 0.53 16.18 5.99 86.78 0.52 16.70 16 12 O -0.54 -19.12 8.78 -3.88 -0.03 -19.15 16 13 N -0.72 -20.83 5.51 -465.97 -2.57 -23.39 16 14 C 0.14 4.87 5.67 86.38 0.49 5.36 16 15 C -0.10 -4.00 5.27 30.59 0.16 -3.84 16 16 C 0.02 1.29 4.97 29.85 0.15 1.44 16 17 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 18 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 19 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 20 N -0.94 -57.45 13.29 21.45 0.28 -57.17 16 21 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 H 0.07 0.95 7.68 -2.39 -0.02 0.93 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.95 7.30 -2.39 -0.02 0.93 16 28 H 0.04 1.38 4.83 -2.39 -0.01 1.36 16 29 H 0.04 1.31 7.05 -2.39 -0.02 1.29 16 30 H 0.04 1.05 7.77 -2.39 -0.02 1.03 16 31 H 0.05 1.09 7.80 -2.39 -0.02 1.07 16 32 H 0.04 1.26 7.20 -2.38 -0.02 1.25 16 33 H 0.04 1.34 5.40 -2.39 -0.01 1.33 16 34 H 0.15 1.73 5.90 -2.91 -0.02 1.72 16 35 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 36 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 37 H 0.14 2.08 6.46 -2.91 -0.02 2.06 16 38 H 0.41 9.44 6.55 -92.71 -0.61 8.83 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 45 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -69.48 349.24 4.29 -65.18 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.37 Total: 16.67 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 4.21 Total: -28.16 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -2.28 Total: -80.56 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.03 Total: -19.15 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.48 4.29 -65.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167009016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.597 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds