Wall clock time and date at job start Tue Mar 31 2020 05:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 110.05574 * 2 1 4 4 C 1.54264 * 110.03441 * 238.57725 * 2 1 3 5 5 C 1.54892 * 104.19866 * 264.32815 * 4 2 1 6 6 C 1.54886 * 102.74834 * 322.05562 * 5 4 2 7 7 H 1.09001 * 110.60094 * 279.21011 * 6 5 4 8 8 N 1.46897 * 110.48677 * 156.62027 * 6 5 4 9 9 C 1.46902 * 110.99941 * 90.22295 * 8 6 5 10 10 C 1.50698 * 109.46839 * 179.97438 * 9 8 6 11 11 C 1.38305 * 119.92779 * 90.00840 * 10 9 8 12 12 C 1.38103 * 120.06775 * 179.97438 * 11 10 9 13 13 C 1.38880 * 119.92898 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06482 * 180.02562 * 13 12 11 15 15 C 1.34827 * 117.00674 * 5.53125 * 14 13 12 16 16 H 1.08007 * 119.99303 * 354.94941 * 15 14 13 17 17 C 1.38649 * 120.00739 * 174.94050 * 15 14 13 18 18 N 1.31559 * 119.99739 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00488 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47491 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47090 * 300.00436 * 19 17 15 22 22 H 1.48496 * 109.46935 * 60.00024 * 19 17 15 23 23 C 1.38879 * 119.86441 * 0.27433 * 13 12 11 24 24 C 1.38101 * 119.92613 * 359.40824 * 23 13 12 25 25 C 1.53882 * 110.03056 * 121.41194 * 2 1 3 26 26 H 1.08998 * 109.47116 * 298.58354 * 1 2 3 27 27 H 1.09000 * 109.46848 * 58.58242 * 1 2 3 28 28 H 1.09002 * 109.47091 * 178.58595 * 1 2 3 29 29 H 1.09005 * 109.46942 * 181.41357 * 3 2 1 30 30 H 1.09000 * 109.46798 * 301.41304 * 3 2 1 31 31 H 1.08998 * 109.47091 * 61.41864 * 3 2 1 32 32 H 1.09005 * 110.48509 * 23.00916 * 4 2 1 33 33 H 1.09000 * 110.48606 * 145.51635 * 4 2 1 34 34 H 1.08997 * 110.75304 * 203.74363 * 5 4 2 35 35 H 1.08998 * 110.75217 * 80.37331 * 5 4 2 36 36 H 1.00907 * 110.99656 * 326.27176 * 8 6 5 37 37 H 1.09002 * 109.46729 * 60.00348 * 9 8 6 38 38 H 1.08995 * 109.47463 * 300.00436 * 9 8 6 39 39 H 1.07997 * 119.96780 * 359.97438 * 11 10 9 40 40 H 1.08000 * 120.03411 * 179.97438 * 12 11 10 41 41 H 0.96996 * 120.00018 * 359.97438 * 18 17 15 42 42 H 1.07995 * 120.03419 * 179.72744 * 23 13 12 43 43 H 1.07998 * 119.95938 * 180.31810 * 24 23 13 44 44 H 1.09004 * 110.03127 * 0.02562 * 25 2 1 45 45 H 1.08997 * 110.03460 * 238.56801 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7556 -1.2367 5 6 2.3281 -2.1903 -0.7189 6 6 2.8875 -1.9407 0.7037 7 1 3.9443 -1.6775 0.6595 8 7 2.6889 -3.1253 1.5493 9 6 3.8402 -4.0335 1.4620 10 6 3.6009 -5.2338 2.3412 11 6 2.9728 -6.3528 1.8252 12 6 2.7525 -7.4546 2.6282 13 6 3.1621 -7.4379 3.9552 14 8 2.9474 -8.5196 4.7468 15 6 2.4366 -9.6188 4.1562 16 1 2.1412 -9.5859 3.1178 17 6 2.2905 -10.7912 4.8817 18 7 2.6500 -10.8311 6.1466 19 14 1.5835 -12.3142 4.0633 20 1 1.5312 -13.4256 5.0467 21 1 0.2121 -12.0218 3.5741 22 1 2.4443 -12.7057 2.9184 23 6 3.7869 -6.3104 4.4719 24 6 4.0102 -5.2143 3.6620 25 6 2.0571 -0.7535 1.2338 26 1 -0.3633 0.4917 0.9024 27 1 -0.3633 0.5357 -0.8770 28 1 -0.3633 -1.0274 -0.0254 29 1 3.1444 1.4262 -0.0254 30 1 1.6761 1.9621 -0.8771 31 1 1.7175 1.9471 0.9024 32 1 1.3062 -0.7697 -2.0254 33 1 2.9799 -0.2988 -1.5979 34 1 3.0676 -2.6932 -1.3420 35 1 1.4031 -2.7652 -0.6750 36 1 1.8329 -3.6023 1.3083 37 1 4.7389 -3.5137 1.7941 38 1 3.9691 -4.3586 0.4297 39 1 2.6542 -6.3650 0.7934 40 1 2.2616 -8.3279 2.2249 41 1 3.0175 -10.0404 6.5715 42 1 4.1026 -6.2929 5.5046 43 1 4.5007 -4.3392 4.0620 44 1 1.2228 -1.1195 1.8324 45 1 2.6867 -0.0953 1.8325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168449168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:25 Heat of formation + Delta-G solvation = -32.798854 kcal Electronic energy + Delta-G solvation = -22257.783838 eV Core-core repulsion = 19046.350185 eV Total energy + Delta-G solvation = -3211.433653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.59123 -39.05274 -37.01495 -35.09073 -32.36741 -31.39796 -30.21350 -29.52842 -27.86657 -27.54900 -25.17425 -24.34249 -23.45910 -21.92538 -20.77531 -20.45408 -18.87942 -18.35839 -16.93642 -15.98929 -15.70456 -15.20350 -14.65257 -14.47015 -14.09543 -13.98169 -13.83590 -13.69702 -13.59769 -13.38191 -13.15072 -12.98024 -12.59597 -12.41598 -12.26896 -11.80936 -11.75098 -11.39798 -11.18233 -11.05376 -10.93642 -10.81089 -10.73231 -10.71739 -10.65274 -10.42814 -10.29410 -10.26184 -9.39733 -8.76954 -8.29579 -8.20342 -7.24167 -6.76733 -4.05833 2.17521 2.24345 3.23553 3.28322 3.45157 4.09395 4.12093 4.38819 4.41558 4.55519 4.77381 4.96076 5.06614 5.09184 5.11310 5.20369 5.23120 5.28668 5.35812 5.39869 5.43684 5.49552 5.53633 5.61719 5.69357 5.71629 5.75614 5.79350 5.81906 5.87257 5.91002 6.03200 6.04020 6.16241 6.20395 6.23087 6.38638 6.64938 6.84292 7.03850 7.17033 7.27106 7.32454 7.49318 7.57205 7.74735 8.40609 8.92576 9.61787 10.67346 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.002589 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.378081 B =10812.636804 C =11130.560886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.112 4.112 5 C -0.154 4.154 6 C 0.083 3.917 7 H 0.078 0.922 8 N -0.678 5.678 9 C 0.118 3.882 10 C -0.182 4.182 11 C -0.066 4.066 12 C -0.230 4.230 13 C 0.158 3.842 14 O -0.203 6.203 15 C -0.472 4.472 16 H 0.083 0.917 17 C 0.009 3.991 18 N -0.881 5.881 19 Si 1.096 2.904 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.197 4.197 24 C -0.052 4.052 25 C -0.105 4.105 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.342 0.658 37 H 0.069 0.931 38 H 0.027 0.973 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.282 0.718 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.073 0.927 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 19.716 -13.836 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.073 4.073 3 C -0.196 4.196 4 C -0.150 4.150 5 C -0.194 4.194 6 C -0.027 4.027 7 H 0.096 0.904 8 N -0.309 5.309 9 C -0.010 4.010 10 C -0.183 4.183 11 C -0.085 4.085 12 C -0.250 4.250 13 C 0.105 3.895 14 O -0.107 6.107 15 C -0.548 4.548 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.513 5.513 19 Si 0.920 3.080 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.216 4.216 24 C -0.071 4.071 25 C -0.143 4.143 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.161 0.839 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.121 0.879 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.092 0.908 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.173 18.340 -12.694 22.336 hybrid contribution 0.219 1.252 -1.346 1.851 sum -0.954 19.592 -14.040 24.122 Atomic orbital electron populations 1.21900 0.94423 1.01754 1.01392 1.21193 0.95538 0.95173 0.95362 1.21913 1.00742 0.95447 1.01464 1.22397 1.00668 0.95072 0.96827 1.23216 1.00983 0.97127 0.98043 1.22449 0.99266 0.91406 0.89582 0.90378 1.60628 1.05420 1.08505 1.56304 1.20635 0.93249 0.90953 0.96159 1.19159 1.08436 0.95495 0.95241 1.20605 0.97055 0.92767 0.98045 1.21128 1.08875 1.00340 0.94629 1.19255 0.92354 0.88195 0.89709 1.83665 1.71979 1.19290 1.35774 1.22194 1.45134 0.88728 0.98726 0.89942 1.26536 0.97141 0.99979 0.95933 1.70571 1.36515 1.33475 1.10768 0.83107 0.76099 0.73851 0.74960 1.19771 1.20751 1.20764 1.20208 1.07473 0.93527 1.00425 1.20459 0.97684 0.96241 0.92678 1.22282 0.99905 0.95758 0.96374 0.92682 0.93023 0.92555 0.92672 0.92968 0.92709 0.91867 0.91659 0.91880 0.91339 0.83898 0.91267 0.95468 0.87866 0.85567 0.90797 0.86742 0.86989 0.90817 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.15 37.16 0.30 -0.76 16 2 C -0.07 -0.58 0.94 -153.39 -0.14 -0.72 16 3 C -0.14 -0.98 8.16 37.16 0.30 -0.68 16 4 C -0.11 -0.88 5.90 -25.07 -0.15 -1.03 16 5 C -0.15 -1.39 6.46 -24.74 -0.16 -1.55 16 6 C 0.08 0.84 3.19 -66.05 -0.21 0.63 16 7 H 0.08 0.80 7.82 -51.93 -0.41 0.39 16 8 N -0.68 -8.42 6.28 -106.24 -0.67 -9.08 16 9 C 0.12 1.59 5.67 -4.98 -0.03 1.56 16 10 C -0.18 -3.10 5.40 -104.58 -0.56 -3.66 16 11 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 12 C -0.23 -5.09 9.17 -39.39 -0.36 -5.45 16 13 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 14 O -0.20 -5.79 9.16 0.06 0.00 -5.79 16 15 C -0.47 -13.41 9.49 30.88 0.29 -13.11 16 16 H 0.08 2.20 5.20 -52.48 -0.27 1.93 16 17 C 0.01 0.26 5.49 -17.52 -0.10 0.17 16 18 N -0.88 -26.53 13.70 55.48 0.76 -25.77 16 19 Si 1.10 23.82 29.92 -169.99 -5.09 18.73 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 C -0.20 -4.21 9.99 -39.39 -0.39 -4.60 16 24 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 25 C -0.11 -0.99 5.85 -25.61 -0.15 -1.14 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.47 7.84 -51.93 -0.41 0.07 16 33 H 0.06 0.49 7.83 -51.93 -0.41 0.08 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.64 7.79 -51.93 -0.40 0.24 16 36 H 0.34 4.32 8.22 -39.29 -0.32 4.00 16 37 H 0.07 0.89 8.02 -51.93 -0.42 0.48 16 38 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 39 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 40 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 41 H 0.28 8.68 7.97 -40.82 -0.33 8.36 16 42 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.07 0.78 7.57 -51.93 -0.39 0.38 16 45 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -29.88 361.06 -9.43 -39.30 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.49 Total: 6.81 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: -2.38 Total: -29.65 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.09 Total: -34.85 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: 0.00 Total: -5.79 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.09 Total: 18.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.88 -9.43 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168449168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.505 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds