Wall clock time and date at job start Tue Mar 31 2020 06:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46719 * 2 1 4 4 C 1.52995 * 109.46857 * 240.00373 * 2 1 3 5 5 C 1.52998 * 109.47441 * 120.00119 * 2 1 3 6 6 C 1.52998 * 109.46977 * 59.99791 * 5 2 1 7 7 C 1.52998 * 109.46977 * 179.97438 * 6 5 2 8 8 C 1.50706 * 109.47064 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99905 * 354.84109 * 8 7 6 10 10 N 1.34779 * 119.99925 * 174.83593 * 8 7 6 11 11 C 1.37137 * 119.99968 * 5.68127 * 10 8 7 12 12 H 1.08004 * 120.00273 * 55.66293 * 11 10 8 13 13 C 1.38888 * 120.00163 * 235.66457 * 11 10 8 14 14 N 1.31432 * 119.99505 * 9.24700 * 13 11 10 15 15 Si 1.86798 * 120.00391 * 189.24837 * 13 11 10 16 16 H 1.48494 * 109.47349 * 59.99900 * 15 13 11 17 17 H 1.48497 * 109.47040 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47042 * 299.99671 * 15 13 11 19 19 C 1.39785 * 119.99768 * 185.67180 * 10 8 7 20 20 C 1.38962 * 120.07702 * 175.18932 * 19 10 8 21 21 C 1.38078 * 119.92712 * 179.97438 * 20 19 10 22 22 C 1.38316 * 120.07440 * 0.02562 * 21 20 19 23 23 C 1.38314 * 120.15564 * 359.97438 * 22 21 20 24 24 C 1.38083 * 120.07414 * 0.02562 * 23 22 21 25 25 H 1.09000 * 109.46845 * 299.99397 * 1 2 3 26 26 H 1.08991 * 109.47381 * 59.99714 * 1 2 3 27 27 H 1.09000 * 109.46993 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46924 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47526 * 299.99739 * 3 2 1 30 30 H 1.09000 * 109.46970 * 60.00679 * 3 2 1 31 31 H 1.09004 * 109.47400 * 299.99829 * 4 2 1 32 32 H 1.09004 * 109.47803 * 59.99665 * 4 2 1 33 33 H 1.09000 * 109.47514 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.46984 * 299.99996 * 5 2 1 35 35 H 1.08998 * 109.47145 * 180.02562 * 5 2 1 36 36 H 1.08998 * 109.47096 * 60.00273 * 6 5 2 37 37 H 1.08998 * 109.47559 * 300.00207 * 6 5 2 38 38 H 1.09000 * 109.47496 * 60.00294 * 7 6 5 39 39 H 1.09006 * 109.46959 * 300.00165 * 7 6 5 40 40 H 0.97001 * 119.99540 * 184.99096 * 14 13 11 41 41 H 1.08007 * 120.03591 * 359.71455 * 20 19 10 42 42 H 1.07997 * 119.96713 * 179.97438 * 21 20 19 43 43 H 1.07994 * 119.92157 * 179.97438 * 22 21 20 44 44 H 1.07995 * 119.95926 * 180.02562 * 23 22 21 45 45 H 1.08009 * 120.03564 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1637 1.2492 7 6 2.0407 -2.8852 2.4980 8 6 1.5388 -4.3062 2.4977 9 8 0.7664 -4.6763 1.6391 10 7 1.9486 -5.1658 3.4516 11 6 2.7282 -4.7195 4.4877 12 1 2.3881 -3.9021 5.1063 13 6 3.9553 -5.3186 4.7416 14 7 4.4527 -6.1850 3.8875 15 14 4.8986 -4.8931 6.2967 16 1 4.0775 -5.2401 7.4844 17 1 6.1689 -5.6614 6.3310 18 1 5.1996 -3.4389 6.3108 19 6 1.5786 -6.5121 3.3847 20 6 2.0809 -7.4192 4.3099 21 6 1.7130 -8.7482 4.2414 22 6 0.8459 -9.1773 3.2528 23 6 0.3439 -8.2773 2.3303 24 6 0.7077 -6.9467 2.3930 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7208 -1.2496 34 1 1.6768 -0.2074 2.1392 35 1 3.1301 -0.7208 1.2494 36 1 1.8934 -2.6775 0.3592 37 1 0.4401 -2.1638 1.2492 38 1 1.6778 -2.3715 3.3883 39 1 3.1307 -2.8851 2.4975 40 1 5.2733 -6.6573 4.0983 41 1 2.7617 -7.0857 5.0793 42 1 2.1033 -9.4538 4.9598 43 1 0.5601 -10.2175 3.2012 44 1 -0.3332 -8.6156 1.5600 45 1 0.3157 -6.2445 1.6720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171463664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:11 Heat of formation + Delta-G solvation = -20.312032 kcal Electronic energy + Delta-G solvation = -23418.233493 eV Core-core repulsion = 20207.341310 eV Total energy + Delta-G solvation = -3210.892183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.70399 -38.06137 -37.09046 -34.99130 -32.61427 -31.93349 -29.59694 -28.99405 -27.27271 -27.18674 -26.54802 -25.13287 -22.45568 -21.37470 -20.70081 -19.26224 -18.48149 -17.61997 -16.09514 -15.60875 -15.24655 -15.06501 -14.77614 -14.29138 -14.23918 -13.94641 -13.49421 -13.36542 -13.02832 -12.75618 -12.44470 -12.24438 -12.20578 -11.79290 -11.63078 -11.58148 -11.44994 -11.30574 -11.23759 -11.17876 -11.02678 -10.80893 -10.61197 -10.51062 -10.24621 -10.20681 -10.00530 -9.98200 -9.19916 -8.72316 -8.06993 -7.76802 -6.85804 -6.29090 -4.53115 2.45852 2.59470 3.04210 3.11947 3.12808 3.78944 3.97766 4.50841 4.75749 4.90015 4.91442 4.95273 5.16324 5.48643 5.55819 5.57655 5.70349 5.72770 5.80638 5.84282 5.89237 5.93271 5.98582 6.03898 6.09093 6.12896 6.15848 6.18953 6.29217 6.31737 6.41725 6.45933 6.55042 6.74312 6.76292 6.78219 6.86834 6.97676 7.18722 7.25732 7.54249 7.65133 7.72886 7.82022 8.08538 8.46988 8.86612 9.29430 9.67171 10.48787 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.004844 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.186966 B = 5778.775954 C = 7267.908405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.108 4.108 6 C -0.106 4.106 7 C -0.116 4.116 8 C 0.493 3.507 9 O -0.569 6.569 10 N -0.386 5.386 11 C -0.366 4.366 12 H 0.092 0.908 13 C 0.056 3.944 14 N -0.842 5.842 15 Si 0.913 3.087 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.185 3.815 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.175 4.175 23 C -0.121 4.121 24 C -0.194 4.194 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.275 0.725 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 8.086 -3.138 9.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 C -0.197 4.197 4 C -0.202 4.202 5 C -0.146 4.146 6 C -0.144 4.144 7 C -0.156 4.156 8 C 0.286 3.714 9 O -0.454 6.454 10 N -0.094 5.094 11 C -0.494 4.494 12 H 0.109 0.891 13 C -0.154 4.154 14 N -0.474 5.474 15 Si 0.738 3.262 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C 0.088 3.912 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.195 4.195 23 C -0.140 4.140 24 C -0.214 4.214 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.775 7.927 -3.618 9.145 hybrid contribution 0.880 -0.139 0.951 1.303 sum -1.895 7.788 -2.667 8.447 Atomic orbital electron populations 1.21935 0.94816 1.02340 1.01023 1.20535 0.95637 0.94969 0.95825 1.21874 1.00840 0.95774 1.01259 1.21938 1.00846 1.00903 0.96478 1.21657 1.00510 0.95757 0.96654 1.21484 1.01205 0.93861 0.97855 1.21357 1.02752 0.92621 0.98862 1.21037 0.81604 0.88659 0.80074 1.90153 1.37854 1.77911 1.39434 1.41040 1.42625 1.04575 1.21118 1.19254 0.98575 1.21769 1.09762 0.89066 1.25613 0.95969 0.95922 0.97868 1.70032 1.20289 1.23982 1.33119 0.86227 0.78989 0.79252 0.81755 1.19344 1.20571 1.19262 1.18315 0.93029 0.85572 0.94310 1.21033 0.99589 0.91832 1.00384 1.20766 0.99142 0.95546 0.98860 1.20778 1.02066 0.98309 0.98330 1.20868 1.00644 0.93737 0.98735 1.22816 1.00271 0.97166 1.01118 0.92924 0.93291 0.91814 0.92835 0.93087 0.92870 0.91821 0.93296 0.92853 0.92179 0.92062 0.91536 0.91447 0.90030 0.89083 0.91489 0.85155 0.87858 0.88258 0.87804 0.80822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.12 37.16 0.30 -1.32 16 2 C -0.07 -0.80 0.80 -154.51 -0.12 -0.92 16 3 C -0.14 -1.40 8.47 37.16 0.31 -1.09 16 4 C -0.14 -1.68 8.12 37.16 0.30 -1.38 16 5 C -0.11 -1.41 4.27 -26.73 -0.11 -1.53 16 6 C -0.11 -1.71 3.81 -26.73 -0.10 -1.81 16 7 C -0.12 -2.20 4.53 -27.88 -0.13 -2.32 16 8 C 0.49 11.57 7.57 -10.98 -0.08 11.49 16 9 O -0.57 -13.92 12.37 5.56 0.07 -13.85 16 10 N -0.39 -9.73 2.62 -58.98 -0.15 -9.89 16 11 C -0.37 -8.96 7.61 -14.94 -0.11 -9.07 16 12 H 0.09 2.11 7.85 -52.48 -0.41 1.70 16 13 C 0.06 1.35 3.49 -17.48 -0.06 1.29 16 14 N -0.84 -21.86 11.39 55.49 0.63 -21.23 16 15 Si 0.91 18.52 29.57 -169.99 -5.03 13.50 16 16 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 C 0.18 4.71 6.05 -83.70 -0.51 4.21 16 20 C -0.11 -2.62 7.87 -39.37 -0.31 -2.93 16 21 C -0.12 -2.67 10.04 -39.61 -0.40 -3.07 16 22 C -0.18 -3.57 10.04 -39.52 -0.40 -3.97 16 23 C -0.12 -2.58 10.04 -39.61 -0.40 -2.97 16 24 C -0.19 -4.70 9.06 -39.37 -0.36 -5.05 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.82 6.43 -51.93 -0.33 0.48 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.14 6.43 -51.93 -0.33 0.81 16 37 H 0.07 1.11 6.33 -51.93 -0.33 0.78 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.09 1.78 8.04 -51.93 -0.42 1.36 16 40 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 41 H 0.13 3.27 5.16 -52.48 -0.27 3.00 16 42 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 45 H 0.18 4.34 4.50 -56.37 -0.25 4.08 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -27.39 352.24 -8.66 -36.04 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -7.32 Total: 10.57 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -2.17 Total: -20.45 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.48 Total: -31.11 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.07 Total: -13.85 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.39 -8.66 -36.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171463664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.732 kcal (2) G-P(sol) polarization free energy of solvation -27.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds