Wall clock time and date at job start Tue Mar 31 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99339 * 179.76368 * 4 3 2 6 6 C 1.38235 * 120.00243 * 0.48625 * 5 4 3 7 7 C 1.50696 * 119.99815 * 179.76576 * 6 5 4 8 8 C 1.53001 * 109.47410 * 270.02155 * 7 6 5 9 9 C 1.50696 * 109.47079 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00427 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99877 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99914 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47115 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47302 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47306 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99740 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99794 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00499 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99715 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47421 * 89.99787 * 19 17 15 21 21 H 1.48498 * 109.47341 * 210.00002 * 19 17 15 22 22 H 1.48501 * 109.47044 * 330.00044 * 19 17 15 23 23 C 1.38230 * 119.99908 * 359.78566 * 6 5 4 24 24 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 30 30 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.99237 * 180.24848 * 5 4 3 32 32 H 1.09001 * 109.47324 * 30.02439 * 7 6 5 33 33 H 1.09004 * 109.47043 * 150.02071 * 7 6 5 34 34 H 1.09001 * 109.46652 * 300.00140 * 8 7 6 35 35 H 1.08996 * 109.46778 * 59.99943 * 8 7 6 36 36 H 0.97002 * 119.99646 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47449 * 300.00302 * 12 11 9 38 38 H 1.08996 * 109.47366 * 60.00397 * 12 11 9 39 39 H 1.09001 * 109.47109 * 300.00388 * 13 12 11 40 40 H 1.09004 * 109.47086 * 59.99915 * 13 12 11 41 41 H 1.09001 * 109.47367 * 300.00244 * 14 13 12 42 42 H 1.09004 * 109.47108 * 59.99942 * 14 13 12 43 43 H 0.96997 * 119.99752 * 180.02562 * 18 17 15 44 44 H 1.07997 * 119.99935 * 179.97438 * 23 6 5 45 45 H 1.07999 * 119.99681 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7243 3.3755 -1.1972 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4481 -0.0001 8 6 4.9866 5.4482 -0.0001 9 6 5.4888 6.8690 0.0004 10 8 4.7006 7.7909 0.0003 11 7 6.8139 7.1154 0.0010 12 6 7.3021 8.4966 0.0010 13 6 8.8321 8.4967 0.0011 14 6 9.3420 9.9391 0.0004 15 6 10.8491 9.9392 0.0012 16 1 11.3891 9.0040 0.0017 17 6 11.5384 11.1333 0.0013 18 7 10.8807 12.2723 0.0002 19 14 13.4064 11.1334 0.0015 20 1 13.9016 11.1334 -1.3985 21 1 13.9013 12.3459 0.7016 22 1 13.9013 9.9209 0.7016 23 6 2.7238 3.3757 1.1971 24 6 2.2627 2.0726 1.1971 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0927 1.5597 -2.1324 31 1 2.9047 3.8844 -2.1326 32 1 3.0932 5.9619 -0.8901 33 1 3.0932 5.9620 0.8898 34 1 5.3498 4.9344 0.8899 35 1 5.3498 4.9343 -0.8901 36 1 7.4442 6.3781 0.0007 37 1 6.9392 9.0103 -0.8892 38 1 6.9384 9.0106 0.8907 39 1 9.1954 7.9828 0.8911 40 1 9.1955 7.9828 -0.8888 41 1 8.9788 10.4526 -0.8898 42 1 8.9786 10.4534 0.8902 43 1 11.3658 13.1123 -0.0001 44 1 2.9039 3.8848 2.1323 45 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171507074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:35 Heat of formation + Delta-G solvation = -58.522878 kcal Electronic energy + Delta-G solvation = -21053.681217 eV Core-core repulsion = 17841.132088 eV Total energy + Delta-G solvation = -3212.549130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99885 -39.31652 -35.67893 -35.16660 -33.31551 -32.71984 -31.20399 -31.17205 -29.14827 -26.84201 -25.08585 -23.27173 -22.98463 -22.38814 -20.75998 -20.63278 -19.76243 -17.08163 -16.48312 -16.19144 -16.14418 -15.46406 -15.40190 -15.27525 -14.46018 -14.45078 -14.12345 -13.99723 -13.60543 -13.50196 -13.39624 -12.93658 -12.57618 -12.30313 -12.09260 -11.84176 -11.76942 -11.72314 -11.61547 -11.25246 -11.06474 -10.98750 -10.90734 -10.73578 -10.60138 -9.88019 -9.87196 -9.37936 -9.16436 -9.12411 -8.76482 -8.73200 -8.37806 -6.02369 -4.05610 1.06488 1.16088 2.80365 3.30331 3.34522 3.36955 3.39863 3.56365 4.39553 4.43813 4.48234 4.61759 4.74577 4.76170 4.88487 4.96792 4.99496 5.12076 5.16679 5.25778 5.26699 5.33364 5.44837 5.50250 5.56684 5.65400 5.73081 5.74961 5.77973 5.82920 5.88256 6.02350 6.16164 6.18362 6.35216 6.43393 6.50001 6.59563 6.76900 6.83530 7.00167 7.62843 7.72544 7.75408 7.96295 8.36608 8.42154 9.01062 9.58655 11.08868 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.045214 B = 0.001848 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.125586 B =15146.059265 C =15428.887776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.083 4.083 7 C -0.065 4.065 8 C -0.134 4.134 9 C 0.506 3.494 10 O -0.546 6.546 11 N -0.728 5.728 12 C 0.116 3.884 13 C -0.121 4.121 14 C 0.023 3.977 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.113 4.113 24 C -0.117 4.117 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.398 0.602 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.122 0.878 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.985 -24.939 0.001 31.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.103 4.103 8 C -0.174 4.174 9 C 0.292 3.708 10 O -0.424 6.424 11 N -0.378 5.378 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.015 4.015 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.131 4.131 24 C -0.135 4.135 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.519 -24.057 0.006 30.980 hybrid contribution 1.453 -0.217 -0.011 1.469 sum -18.066 -24.274 -0.005 30.259 Atomic orbital electron populations 1.21749 0.94759 1.01643 1.02262 1.20538 0.96170 0.92762 1.02764 1.19890 0.99534 0.96255 0.93281 1.21010 1.00090 0.94900 0.97461 1.21083 0.99546 0.94729 0.97744 1.19937 0.99122 0.96101 0.93190 1.20332 0.93375 0.92003 1.04596 1.21649 0.96796 0.94464 1.04531 1.20658 0.82579 0.91341 0.76266 1.90702 1.55353 1.46568 1.49803 1.46249 1.06754 1.10083 1.74740 1.21637 0.96174 0.80977 1.01931 1.21887 0.90822 1.02325 1.00845 1.19037 0.95774 0.88979 0.97662 1.21207 0.91631 0.92328 1.50975 0.92645 1.25031 0.98506 0.95660 0.95262 1.69968 1.35458 0.97282 1.50534 0.86577 0.85702 0.77508 0.78093 1.20659 1.21194 1.19908 1.21079 0.99522 0.94755 0.97745 1.21006 1.00075 0.94915 0.97463 0.92455 0.92553 0.92558 0.91124 0.91122 0.86264 0.85985 0.90143 0.90146 0.88939 0.88933 0.76802 0.91837 0.91827 0.92744 0.92752 0.96275 0.96266 0.92928 0.85986 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.89 37.16 0.37 -0.42 16 2 C -0.08 -0.50 6.07 -27.88 -0.17 -0.67 16 3 C -0.09 -0.70 5.13 -104.62 -0.54 -1.24 16 4 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 5 C -0.11 -0.99 9.70 -39.58 -0.38 -1.37 16 6 C -0.08 -0.77 5.13 -104.63 -0.54 -1.31 16 7 C -0.07 -0.66 4.63 -27.88 -0.13 -0.79 16 8 C -0.13 -1.32 5.68 -27.88 -0.16 -1.48 16 9 C 0.51 7.19 7.83 -10.99 -0.09 7.11 16 10 O -0.55 -10.05 15.98 5.55 0.09 -9.96 16 11 N -0.73 -10.24 5.56 -60.30 -0.33 -10.58 16 12 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 13 C -0.12 -2.36 5.27 -26.73 -0.14 -2.51 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.11 -0.99 9.70 -39.59 -0.38 -1.37 16 24 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 33 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 4.45 8.47 -40.82 -0.35 4.10 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 377.92 15.07 5.70 5.70 Total: -1.00 -32.62 377.92 -10.24 -42.86 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.90 Total: -0.72 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -3.50 Total: -17.66 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.40 Total: -36.68 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.62 -10.24 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171507074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.664 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds