Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99339 * 179.76368 * 4 3 2 6 6 C 1.38235 * 120.00243 * 0.48625 * 5 4 3 7 7 C 1.50696 * 119.99815 * 179.76576 * 6 5 4 8 8 C 1.53001 * 109.47410 * 270.02155 * 7 6 5 9 9 C 1.50696 * 109.47079 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00427 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99877 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99914 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47115 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47302 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47306 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99740 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99794 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00499 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99715 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47421 * 89.99787 * 19 17 15 21 21 H 1.48498 * 109.47341 * 210.00002 * 19 17 15 22 22 H 1.48501 * 109.47044 * 330.00044 * 19 17 15 23 23 C 1.38230 * 119.99908 * 359.78566 * 6 5 4 24 24 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 30 30 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.99237 * 180.24848 * 5 4 3 32 32 H 1.09001 * 109.47324 * 30.02439 * 7 6 5 33 33 H 1.09004 * 109.47043 * 150.02071 * 7 6 5 34 34 H 1.09001 * 109.46652 * 300.00140 * 8 7 6 35 35 H 1.08996 * 109.46778 * 59.99943 * 8 7 6 36 36 H 0.97002 * 119.99646 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47449 * 300.00302 * 12 11 9 38 38 H 1.08996 * 109.47366 * 60.00397 * 12 11 9 39 39 H 1.09001 * 109.47109 * 300.00388 * 13 12 11 40 40 H 1.09004 * 109.47086 * 59.99915 * 13 12 11 41 41 H 1.09001 * 109.47367 * 300.00244 * 14 13 12 42 42 H 1.09004 * 109.47108 * 59.99942 * 14 13 12 43 43 H 0.96997 * 119.99752 * 180.02562 * 18 17 15 44 44 H 1.07997 * 119.99935 * 179.97438 * 23 6 5 45 45 H 1.07999 * 119.99681 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7243 3.3755 -1.1972 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4481 -0.0001 8 6 4.9866 5.4482 -0.0001 9 6 5.4888 6.8690 0.0004 10 8 4.7006 7.7909 0.0003 11 7 6.8139 7.1154 0.0010 12 6 7.3021 8.4966 0.0010 13 6 8.8321 8.4967 0.0011 14 6 9.3420 9.9391 0.0004 15 6 10.8491 9.9392 0.0012 16 1 11.3891 9.0040 0.0017 17 6 11.5384 11.1333 0.0013 18 7 10.8807 12.2723 0.0002 19 14 13.4064 11.1334 0.0015 20 1 13.9016 11.1334 -1.3985 21 1 13.9013 12.3459 0.7016 22 1 13.9013 9.9209 0.7016 23 6 2.7238 3.3757 1.1971 24 6 2.2627 2.0726 1.1971 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0927 1.5597 -2.1324 31 1 2.9047 3.8844 -2.1326 32 1 3.0932 5.9619 -0.8901 33 1 3.0932 5.9620 0.8898 34 1 5.3498 4.9344 0.8899 35 1 5.3498 4.9343 -0.8901 36 1 7.4442 6.3781 0.0007 37 1 6.9392 9.0103 -0.8892 38 1 6.9384 9.0106 0.8907 39 1 9.1954 7.9828 0.8911 40 1 9.1955 7.9828 -0.8888 41 1 8.9788 10.4526 -0.8898 42 1 8.9786 10.4534 0.8902 43 1 11.3658 13.1123 -0.0001 44 1 2.9039 3.8848 2.1323 45 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171507074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -76.226491 kcal Electronic energy + Delta-G solvation = -21054.448904 eV Core-core repulsion = 17841.132088 eV Total energy + Delta-G solvation = -3213.316816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90947 -40.22668 -37.04604 -35.99455 -35.18226 -33.53319 -32.86741 -31.77330 -29.97575 -28.47011 -26.09170 -24.68199 -23.58880 -23.28149 -22.31271 -21.38440 -20.98113 -18.56177 -18.08706 -17.06449 -16.87829 -16.78730 -16.47485 -16.40249 -15.93221 -15.68920 -14.91175 -14.61352 -14.46664 -14.31011 -14.20858 -14.05320 -13.92615 -13.74743 -13.37963 -13.24355 -12.74874 -12.69310 -12.55444 -12.38480 -12.34766 -12.28112 -11.86529 -11.67987 -11.63893 -11.59424 -11.59394 -11.24839 -10.83044 -10.55930 -10.08053 -9.77939 -9.37249 -8.19905 -6.31729 0.43576 0.54523 1.41635 1.43024 1.54030 1.66159 2.24677 2.42808 2.87394 3.13785 3.68674 3.90897 3.93430 4.07689 4.14082 4.15129 4.20395 4.21035 4.37480 4.39034 4.53981 4.54720 4.64094 4.67107 4.67957 4.74817 4.92947 4.97101 5.01358 5.09000 5.11039 5.12235 5.16333 5.25710 5.27682 5.40319 5.45712 5.53187 5.57201 5.69741 5.77169 5.78150 5.83441 6.16766 6.21510 6.60707 6.85848 7.29237 7.38088 8.92126 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.045214 B = 0.001848 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.125586 B =15146.059265 C =15428.887776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.124 4.124 5 C -0.122 4.122 6 C -0.094 4.094 7 C -0.060 4.060 8 C -0.121 4.121 9 C 0.504 3.496 10 O -0.593 6.593 11 N -0.717 5.717 12 C 0.128 3.872 13 C -0.102 4.102 14 C 0.022 3.978 15 C -0.542 4.542 16 H 0.067 0.933 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.260 1.260 23 C -0.122 4.122 24 C -0.124 4.124 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.416 0.584 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.068 0.932 41 H -0.009 1.009 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.129 0.871 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.160 -27.857 -0.001 33.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.142 4.142 5 C -0.140 4.140 6 C -0.094 4.094 7 C -0.098 4.098 8 C -0.160 4.160 9 C 0.292 3.708 10 O -0.474 6.474 11 N -0.369 5.369 12 C 0.004 3.996 13 C -0.139 4.139 14 C -0.016 4.016 15 C -0.580 4.580 16 H 0.085 0.915 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.184 1.184 23 C -0.140 4.140 24 C -0.142 4.142 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.253 0.747 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.147 0.853 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.683 -27.028 0.003 32.857 hybrid contribution 1.120 0.679 -0.011 1.310 sum -17.563 -26.349 -0.008 31.666 Atomic orbital electron populations 1.21738 0.94460 1.02306 1.01779 1.20580 0.96341 0.91642 1.03570 1.20188 0.98848 0.97204 0.93130 1.21248 0.99833 0.94775 0.98347 1.21244 0.99688 0.95196 0.97880 1.19860 1.00219 0.95507 0.93780 1.20221 0.93622 0.92566 1.03373 1.21639 0.96417 0.91265 1.06683 1.21451 0.81899 0.92750 0.74685 1.90688 1.56434 1.48449 1.51790 1.46043 1.07390 1.08975 1.74488 1.21206 0.94918 0.82998 1.00459 1.21594 0.91777 0.98436 1.02131 1.18962 0.95236 0.92347 0.95031 1.21690 0.92885 0.92914 1.50538 0.91489 1.26033 1.04102 0.95238 0.94738 1.70117 1.37696 0.98047 1.51645 0.85400 0.78981 0.77911 0.78460 1.19808 1.21038 1.18408 1.21240 0.99666 0.95222 0.97881 1.21244 0.99819 0.94790 0.98350 0.91242 0.93041 0.93044 0.90334 0.90330 0.84781 0.85310 0.91428 0.91433 0.86616 0.86607 0.74660 0.93464 0.93455 0.91342 0.91332 0.99014 0.99007 0.92828 0.85313 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 71.98 0.71 -0.59 16 2 C -0.08 -0.80 6.07 29.85 0.18 -0.62 16 3 C -0.09 -1.30 5.13 -19.86 -0.10 -1.40 16 4 C -0.12 -1.80 9.70 22.27 0.22 -1.58 16 5 C -0.12 -1.98 9.70 22.27 0.22 -1.76 16 6 C -0.09 -1.64 5.13 -19.87 -0.10 -1.74 16 7 C -0.06 -1.18 4.63 29.85 0.14 -1.04 16 8 C -0.12 -2.14 5.68 29.85 0.17 -1.97 16 9 C 0.50 13.93 7.83 87.66 0.69 14.62 16 10 O -0.59 -22.17 15.98 -3.04 -0.05 -22.22 16 11 N -0.72 -19.24 5.56 -463.07 -2.57 -21.81 16 12 C 0.13 4.57 5.67 86.38 0.49 5.06 16 13 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 14 C 0.02 1.15 4.97 29.85 0.15 1.30 16 15 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 16 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 17 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 18 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 19 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 C -0.12 -1.98 9.70 22.27 0.22 -1.76 16 24 C -0.12 -1.80 9.70 22.27 0.22 -1.58 16 25 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 29 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 30 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 33 H 0.07 1.48 8.04 -2.38 -0.02 1.47 16 34 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.42 8.19 8.47 -92.71 -0.79 7.41 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 43 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.13 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -71.48 377.92 3.89 -67.59 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.16 Total: 14.33 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 4.04 Total: -26.69 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.29 Total: -78.82 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -71.48 3.89 -67.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171507074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.633 kcal (2) G-P(sol) polarization free energy of solvation -71.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds