Wall clock time and date at job start Tue Mar 31 2020 06:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47098 * 2 1 4 4 C 1.52993 * 109.47290 * 184.99944 * 3 2 1 5 5 C 1.52999 * 109.47290 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47084 * 64.99464 * 3 2 1 7 7 C 1.52997 * 109.47112 * 60.00222 * 6 3 2 8 8 N 1.46499 * 109.46961 * 305.00026 * 3 2 1 9 9 C 1.34781 * 119.99825 * 300.00076 * 8 3 2 10 10 O 1.21542 * 120.00087 * 359.97438 * 9 8 3 11 11 C 1.47890 * 119.99714 * 180.02562 * 9 8 3 12 12 C 1.39913 * 120.02810 * 359.96967 * 11 9 8 13 13 C 1.38333 * 120.36039 * 180.02562 * 12 11 9 14 14 C 1.37756 * 120.40995 * 359.96274 * 13 12 11 15 15 C 1.40753 * 120.03756 * 0.04042 * 14 13 12 16 16 C 1.41435 * 120.17333 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00291 * 24.39761 * 16 15 14 18 18 C 1.39938 * 119.99544 * 204.40500 * 16 15 14 19 19 N 1.30830 * 120.00373 * 17.83908 * 18 16 15 20 20 Si 1.86800 * 119.99826 * 197.83568 * 18 16 15 21 21 H 1.48501 * 109.47279 * 59.99836 * 20 18 16 22 22 H 1.48504 * 109.47252 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47104 * 300.00046 * 20 18 16 24 24 C 1.38993 * 120.02183 * 179.97438 * 11 9 8 25 25 H 1.09004 * 109.46935 * 60.00416 * 1 2 3 26 26 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47566 * 300.00171 * 1 2 3 28 28 H 1.08998 * 109.47091 * 239.99601 * 2 1 3 29 29 H 1.09004 * 109.46935 * 119.99584 * 2 1 3 30 30 H 1.09006 * 109.47163 * 300.00042 * 4 3 2 31 31 H 1.08998 * 109.47186 * 59.99533 * 4 3 2 32 32 H 1.08999 * 109.47409 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.46890 * 299.99922 * 5 4 3 34 34 H 1.08998 * 109.47387 * 59.99657 * 5 4 3 35 35 H 1.08998 * 109.46910 * 179.97438 * 6 3 2 36 36 H 1.08999 * 109.47491 * 300.00555 * 6 3 2 37 37 H 1.09003 * 109.47088 * 59.99588 * 7 6 3 38 38 H 1.08997 * 109.47592 * 179.97438 * 7 6 3 39 39 H 1.08997 * 109.47387 * 300.00555 * 7 6 3 40 40 H 0.97004 * 120.00307 * 120.00176 * 8 3 2 41 41 H 1.08005 * 119.82032 * 0.02924 * 12 11 9 42 42 H 1.07998 * 119.79353 * 179.97438 * 13 12 11 43 43 H 1.08000 * 119.97966 * 180.02562 * 14 13 12 44 44 H 0.96995 * 119.99719 * 180.02562 * 19 18 16 45 45 H 1.08005 * 120.20452 * 359.69875 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 -0.1257 5 6 4.0748 2.8868 -0.1251 6 6 1.6351 2.1266 1.3073 7 6 2.2451 1.3700 2.4890 8 7 1.4559 2.1669 -1.1314 9 6 1.6792 1.7425 -2.3910 10 8 2.3657 0.7591 -2.5882 11 6 1.0900 2.4742 -3.5332 12 6 0.3000 3.6066 -3.3068 13 6 -0.2550 4.2959 -4.3701 14 6 -0.0359 3.8762 -5.6637 15 6 0.7559 2.7391 -5.9110 16 6 0.9822 2.3053 -7.2380 17 1 0.9082 3.0070 -8.0556 18 6 1.3019 0.9667 -7.4916 19 7 1.0569 0.0531 -6.5877 20 14 2.0784 0.4843 -9.1206 21 1 3.3699 1.1988 -9.2843 22 1 2.3169 -0.9813 -9.1406 23 1 1.1651 0.8519 -10.2324 24 6 1.3204 2.0373 -4.8324 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9994 0.9053 0.7162 31 1 3.8532 0.9570 -1.0570 32 1 5.1611 2.8882 -0.2151 33 1 3.6402 3.4262 -0.9666 34 1 3.7864 3.3738 0.8065 35 1 1.9989 3.1541 1.3075 36 1 0.5488 2.1252 1.3969 37 1 3.3315 1.3713 2.3995 38 1 1.9571 1.8576 3.4203 39 1 1.8820 0.3423 2.4890 40 1 0.9083 2.9521 -0.9741 41 1 0.1226 3.9445 -2.2965 42 1 -0.8636 5.1686 -4.1848 43 1 -0.4723 4.4198 -6.4887 44 1 1.2789 -0.8747 -6.7634 45 1 1.9335 1.1665 -5.0121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172732107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:26 Heat of formation + Delta-G solvation = -39.724035 kcal Electronic energy + Delta-G solvation = -23865.636082 eV Core-core repulsion = 20653.902131 eV Total energy + Delta-G solvation = -3211.733951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08182 -37.73502 -36.44449 -33.76306 -32.51307 -32.00508 -30.78461 -29.79454 -29.37658 -26.13921 -25.22651 -24.24346 -22.34894 -21.77036 -20.94698 -19.42596 -18.59402 -17.71535 -16.39722 -15.57369 -15.35561 -15.16232 -14.87026 -14.71408 -14.14250 -13.40481 -13.25790 -13.19516 -13.00674 -12.67815 -12.61596 -12.52628 -12.44385 -12.10369 -11.78414 -11.63857 -11.37707 -11.23363 -11.13554 -11.06976 -10.87470 -10.71950 -10.68767 -10.49727 -10.26617 -10.15222 -9.90200 -9.67157 -9.19239 -8.73712 -8.48206 -7.59972 -7.50088 -6.78776 -4.40034 2.26054 2.83924 3.08058 3.09666 3.17806 3.74042 3.91223 3.94670 4.65971 4.74432 4.92056 5.01625 5.31630 5.32363 5.43216 5.54426 5.61146 5.63232 5.66531 5.68218 5.82217 5.86005 5.86548 6.02125 6.10763 6.11217 6.14810 6.26090 6.29863 6.29932 6.43456 6.49780 6.60089 6.67230 6.74609 7.00183 7.03973 7.11727 7.23618 7.40729 7.72937 7.80340 7.95170 8.16535 8.25245 8.52895 8.81905 8.85604 9.07250 10.15745 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.004438 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.240240 B = 6307.167096 C = 6758.515790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.184 3.816 4 C -0.138 4.138 5 C -0.148 4.148 6 C -0.129 4.129 7 C -0.151 4.151 8 N -0.726 5.726 9 C 0.568 3.432 10 O -0.542 6.542 11 C -0.128 4.128 12 C -0.219 4.219 13 C -0.098 4.098 14 C -0.213 4.213 15 C 0.099 3.901 16 C -0.462 4.462 17 H 0.080 0.920 18 C 0.074 3.926 19 N -0.783 5.783 20 Si 0.910 3.090 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.265 1.265 24 C -0.093 4.093 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.396 0.604 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.285 0.715 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 2.074 13.497 13.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.098 3.902 4 C -0.176 4.176 5 C -0.205 4.205 6 C -0.167 4.167 7 C -0.208 4.208 8 N -0.379 5.379 9 C 0.359 3.641 10 O -0.420 6.420 11 C -0.131 4.131 12 C -0.239 4.239 13 C -0.116 4.116 14 C -0.233 4.233 15 C 0.096 3.904 16 C -0.490 4.490 17 H 0.098 0.902 18 C -0.145 4.145 19 N -0.407 5.407 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.190 1.190 24 C -0.113 4.113 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.929 1.087 13.400 13.581 hybrid contribution -0.103 0.160 -0.615 0.643 sum 1.825 1.248 12.785 12.975 Atomic orbital electron populations 1.21725 0.95931 1.01105 1.01665 1.21982 0.96190 0.96208 1.03151 1.20221 0.92848 0.91886 0.85252 1.21977 0.94490 0.97574 1.03548 1.21753 1.00277 0.96968 1.01546 1.21816 1.01174 0.99849 0.93862 1.21839 1.01287 1.00631 0.97054 1.46037 1.54320 1.32159 1.05378 1.18709 0.79269 0.83543 0.82600 1.90620 1.39258 1.26836 1.85286 1.19535 1.02839 0.97615 0.93141 1.20340 1.07437 0.99478 0.96608 1.20429 0.99594 0.98362 0.93265 1.21088 1.04887 1.02342 0.95029 1.17595 0.88785 0.90609 0.93365 1.19558 1.41912 0.94259 0.93316 0.90182 1.25949 0.93305 0.96403 0.98836 1.69786 1.33499 1.02653 1.34758 0.86344 0.80585 0.77960 0.81743 1.18727 1.20224 1.18984 1.21626 0.99481 1.00604 0.89583 0.92293 0.93313 0.93282 0.89623 0.91768 0.91776 0.89520 0.93319 0.92436 0.93099 0.91279 0.91348 0.92188 0.92830 0.92145 0.76917 0.89343 0.89038 0.88732 0.90426 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.45 37.16 0.35 -1.69 16 2 C -0.14 -1.98 4.46 -26.73 -0.12 -2.10 16 3 C 0.18 2.51 0.22 -131.82 -0.03 2.48 16 4 C -0.14 -1.94 4.42 -26.74 -0.12 -2.06 16 5 C -0.15 -1.93 9.40 37.16 0.35 -1.58 16 6 C -0.13 -1.36 4.51 -26.73 -0.12 -1.48 16 7 C -0.15 -1.36 9.22 37.16 0.34 -1.01 16 8 N -0.73 -11.64 3.36 -48.53 -0.16 -11.80 16 9 C 0.57 11.95 6.98 -12.31 -0.09 11.86 16 10 O -0.54 -12.83 12.59 5.33 0.07 -12.77 16 11 C -0.13 -2.99 5.87 -105.04 -0.62 -3.60 16 12 C -0.22 -4.57 9.55 -38.92 -0.37 -4.94 16 13 C -0.10 -2.10 10.01 -39.72 -0.40 -2.50 16 14 C -0.21 -5.10 9.78 -38.81 -0.38 -5.47 16 15 C 0.10 2.62 5.57 -106.87 -0.60 2.03 16 16 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16 17 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 18 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 19 N -0.78 -20.76 10.96 55.55 0.61 -20.15 16 20 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.09 -2.46 8.23 -38.44 -0.32 -2.78 16 25 H 0.06 0.96 7.29 -51.93 -0.38 0.58 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.57 6.56 -51.93 -0.34 0.23 16 28 H 0.09 1.54 6.32 -51.93 -0.33 1.21 16 29 H 0.06 0.79 6.17 -51.93 -0.32 0.47 16 30 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 31 H 0.09 1.53 6.16 -51.93 -0.32 1.21 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.86 7.60 -51.93 -0.39 0.46 16 34 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 35 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 36 H 0.07 0.70 6.56 -51.93 -0.34 0.36 16 37 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.55 6.32 -51.93 -0.33 0.22 16 40 H 0.40 5.68 6.49 -40.82 -0.26 5.42 16 41 H 0.09 1.53 6.38 -52.48 -0.33 1.20 16 42 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 44 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 45 H 0.13 3.82 5.75 -52.48 -0.30 3.52 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -28.32 343.76 -8.53 -36.84 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -6.65 Total: 12.44 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -2.54 Total: -23.57 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.45 Total: -31.95 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.07 Total: -12.77 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.32 -8.53 -36.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172732107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.882 kcal (2) G-P(sol) polarization free energy of solvation -28.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds