Wall clock time and date at job start Tue Mar 31 2020 06:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47098 * 2 1 4 4 C 1.52993 * 109.47290 * 184.99944 * 3 2 1 5 5 C 1.52999 * 109.47290 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47084 * 64.99464 * 3 2 1 7 7 C 1.52997 * 109.47112 * 60.00222 * 6 3 2 8 8 N 1.46499 * 109.46961 * 305.00026 * 3 2 1 9 9 C 1.34781 * 119.99825 * 300.00076 * 8 3 2 10 10 O 1.21542 * 120.00087 * 359.97438 * 9 8 3 11 11 C 1.47890 * 119.99714 * 180.02562 * 9 8 3 12 12 C 1.39913 * 120.02810 * 359.96967 * 11 9 8 13 13 C 1.38333 * 120.36039 * 180.02562 * 12 11 9 14 14 C 1.37756 * 120.40995 * 359.96274 * 13 12 11 15 15 C 1.40753 * 120.03756 * 0.04042 * 14 13 12 16 16 C 1.41435 * 120.17333 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00291 * 24.39761 * 16 15 14 18 18 C 1.39938 * 119.99544 * 204.40500 * 16 15 14 19 19 N 1.30830 * 120.00373 * 17.83908 * 18 16 15 20 20 Si 1.86800 * 119.99826 * 197.83568 * 18 16 15 21 21 H 1.48501 * 109.47279 * 59.99836 * 20 18 16 22 22 H 1.48504 * 109.47252 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47104 * 300.00046 * 20 18 16 24 24 C 1.38993 * 120.02183 * 179.97438 * 11 9 8 25 25 H 1.09004 * 109.46935 * 60.00416 * 1 2 3 26 26 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47566 * 300.00171 * 1 2 3 28 28 H 1.08998 * 109.47091 * 239.99601 * 2 1 3 29 29 H 1.09004 * 109.46935 * 119.99584 * 2 1 3 30 30 H 1.09006 * 109.47163 * 300.00042 * 4 3 2 31 31 H 1.08998 * 109.47186 * 59.99533 * 4 3 2 32 32 H 1.08999 * 109.47409 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.46890 * 299.99922 * 5 4 3 34 34 H 1.08998 * 109.47387 * 59.99657 * 5 4 3 35 35 H 1.08998 * 109.46910 * 179.97438 * 6 3 2 36 36 H 1.08999 * 109.47491 * 300.00555 * 6 3 2 37 37 H 1.09003 * 109.47088 * 59.99588 * 7 6 3 38 38 H 1.08997 * 109.47592 * 179.97438 * 7 6 3 39 39 H 1.08997 * 109.47387 * 300.00555 * 7 6 3 40 40 H 0.97004 * 120.00307 * 120.00176 * 8 3 2 41 41 H 1.08005 * 119.82032 * 0.02924 * 12 11 9 42 42 H 1.07998 * 119.79353 * 179.97438 * 13 12 11 43 43 H 1.08000 * 119.97966 * 180.02562 * 14 13 12 44 44 H 0.96995 * 119.99719 * 180.02562 * 19 18 16 45 45 H 1.08005 * 120.20452 * 359.69875 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 -0.1257 5 6 4.0748 2.8868 -0.1251 6 6 1.6351 2.1266 1.3073 7 6 2.2451 1.3700 2.4890 8 7 1.4559 2.1669 -1.1314 9 6 1.6792 1.7425 -2.3910 10 8 2.3657 0.7591 -2.5882 11 6 1.0900 2.4742 -3.5332 12 6 0.3000 3.6066 -3.3068 13 6 -0.2550 4.2959 -4.3701 14 6 -0.0359 3.8762 -5.6637 15 6 0.7559 2.7391 -5.9110 16 6 0.9822 2.3053 -7.2380 17 1 0.9082 3.0070 -8.0556 18 6 1.3019 0.9667 -7.4916 19 7 1.0569 0.0531 -6.5877 20 14 2.0784 0.4843 -9.1206 21 1 3.3699 1.1988 -9.2843 22 1 2.3169 -0.9813 -9.1406 23 1 1.1651 0.8519 -10.2324 24 6 1.3204 2.0373 -4.8324 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9994 0.9053 0.7162 31 1 3.8532 0.9570 -1.0570 32 1 5.1611 2.8882 -0.2151 33 1 3.6402 3.4262 -0.9666 34 1 3.7864 3.3738 0.8065 35 1 1.9989 3.1541 1.3075 36 1 0.5488 2.1252 1.3969 37 1 3.3315 1.3713 2.3995 38 1 1.9571 1.8576 3.4203 39 1 1.8820 0.3423 2.4890 40 1 0.9083 2.9521 -0.9741 41 1 0.1226 3.9445 -2.2965 42 1 -0.8636 5.1686 -4.1848 43 1 -0.4723 4.4198 -6.4887 44 1 1.2789 -0.8747 -6.7634 45 1 1.9335 1.1665 -5.0121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172732107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:25 Heat of formation + Delta-G solvation = -54.567489 kcal Electronic energy + Delta-G solvation = -23866.279742 eV Core-core repulsion = 20653.902131 eV Total energy + Delta-G solvation = -3212.377611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49770 -39.35934 -38.03943 -35.62789 -33.96546 -33.12940 -31.95890 -31.41258 -31.15270 -27.46364 -26.94895 -25.31768 -23.89245 -22.89783 -22.79167 -21.01694 -19.88421 -19.45379 -17.99942 -16.96939 -16.70918 -16.58703 -16.45259 -16.15109 -15.75230 -15.02079 -14.83043 -14.62775 -14.32060 -14.21880 -13.91028 -13.68110 -13.61315 -13.44531 -12.97587 -12.95753 -12.80850 -12.68775 -12.52938 -12.47090 -12.22333 -12.14700 -12.06320 -11.86412 -11.74127 -11.51003 -11.26588 -11.17619 -11.06240 -10.35823 -9.92370 -9.44409 -9.36804 -8.66753 -6.38393 0.44044 1.02165 1.34694 1.46642 1.49557 2.16301 2.21417 2.35906 2.81292 3.69674 3.71528 3.95325 3.96179 4.13661 4.29546 4.42456 4.43394 4.49747 4.56899 4.59356 4.59602 4.64103 4.79371 4.88502 4.90569 4.93963 5.07453 5.08730 5.10601 5.20487 5.24518 5.27259 5.30325 5.30694 5.34528 5.36186 5.46166 5.53356 5.63439 5.79532 5.89099 5.95567 6.06157 6.30157 6.55534 6.81664 6.88016 6.95808 7.48866 8.29553 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.004438 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.240240 B = 6307.167096 C = 6758.515790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.180 3.820 4 C -0.137 4.137 5 C -0.143 4.143 6 C -0.122 4.122 7 C -0.150 4.150 8 N -0.703 5.703 9 C 0.565 3.435 10 O -0.577 6.577 11 C -0.139 4.139 12 C -0.199 4.199 13 C -0.096 4.096 14 C -0.221 4.221 15 C 0.067 3.933 16 C -0.501 4.501 17 H 0.083 0.917 18 C 0.031 3.969 19 N -0.825 5.825 20 Si 0.981 3.019 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.252 1.252 24 C -0.132 4.132 25 H 0.029 0.971 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.034 0.966 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.407 0.593 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.106 0.894 44 H 0.286 0.714 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 3.993 16.332 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.095 3.905 4 C -0.175 4.175 5 C -0.200 4.200 6 C -0.159 4.159 7 C -0.207 4.207 8 N -0.355 5.355 9 C 0.355 3.645 10 O -0.458 6.458 11 C -0.142 4.142 12 C -0.219 4.219 13 C -0.114 4.114 14 C -0.241 4.241 15 C 0.065 3.935 16 C -0.530 4.530 17 H 0.101 0.899 18 C -0.184 4.184 19 N -0.450 5.450 20 Si 0.801 3.199 21 H -0.185 1.185 22 H -0.196 1.196 23 H -0.176 1.176 24 C -0.153 4.153 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.244 0.756 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.124 0.876 44 H 0.096 0.904 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.158 3.044 16.273 16.596 hybrid contribution 0.085 -0.345 -1.298 1.346 sum 1.243 2.699 14.975 15.267 Atomic orbital electron populations 1.21694 0.95320 1.01357 1.01608 1.21953 0.96679 0.96639 1.02182 1.20487 0.92447 0.91670 0.85909 1.21940 0.95069 0.98335 1.02173 1.21722 1.00423 0.95892 1.02009 1.21807 1.02018 1.00216 0.91873 1.21850 1.01252 1.00579 0.97031 1.45865 1.53305 1.32053 1.04306 1.18520 0.79112 0.83076 0.83800 1.90621 1.40825 1.28355 1.86012 1.19914 1.02868 0.98493 0.92926 1.20847 1.04621 0.97444 0.98952 1.20913 0.99133 0.99332 0.92034 1.21388 1.04247 1.01463 0.96970 1.17941 0.89884 0.92007 0.93644 1.19847 1.44286 0.95168 0.93708 0.89912 1.26834 0.93123 0.95961 1.02483 1.69894 1.35174 1.02919 1.37021 0.85268 0.79593 0.77677 0.77313 1.18519 1.19639 1.17574 1.21426 1.01352 1.00944 0.91540 0.95180 0.93138 0.90206 0.94157 0.89174 0.89467 0.94018 0.92956 0.94726 0.90137 0.90034 0.90292 0.92099 0.90803 0.92191 0.75566 0.84743 0.84531 0.87568 0.90382 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.45 71.98 0.68 -3.08 16 2 C -0.14 -3.84 4.46 30.60 0.14 -3.70 16 3 C 0.18 4.61 0.22 3.60 0.00 4.61 16 4 C -0.14 -3.75 4.42 30.59 0.14 -3.62 16 5 C -0.14 -3.47 9.40 71.98 0.68 -2.79 16 6 C -0.12 -2.04 4.51 30.59 0.14 -1.91 16 7 C -0.15 -2.02 9.22 71.98 0.66 -1.36 16 8 N -0.70 -21.72 3.36 -425.73 -1.43 -23.15 16 9 C 0.57 24.49 6.98 86.80 0.61 25.09 16 10 O -0.58 -29.30 12.59 -3.85 -0.05 -29.35 16 11 C -0.14 -6.62 5.87 -20.13 -0.12 -6.73 16 12 C -0.20 -7.89 9.55 22.70 0.22 -7.68 16 13 C -0.10 -3.87 10.01 22.18 0.22 -3.65 16 14 C -0.22 -10.53 9.78 22.77 0.22 -10.30 16 15 C 0.07 3.74 5.57 -21.32 -0.12 3.62 16 16 C -0.50 -27.83 9.05 23.47 0.21 -27.62 16 17 H 0.08 4.33 7.91 -2.91 -0.02 4.31 16 18 C 0.03 1.65 5.14 85.25 0.44 2.09 16 19 N -0.82 -46.86 10.96 21.83 0.24 -46.63 16 20 Si 0.98 40.37 29.59 68.60 2.03 42.40 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 24 C -0.13 -7.45 8.23 23.01 0.19 -7.26 16 25 H 0.03 0.95 7.29 -2.38 -0.02 0.93 16 26 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.08 1.60 6.56 -2.39 -0.02 1.58 16 28 H 0.04 1.52 6.32 -2.39 -0.02 1.50 16 29 H 0.09 2.04 6.17 -2.38 -0.01 2.03 16 30 H 0.09 1.96 6.43 -2.38 -0.02 1.94 16 31 H 0.04 1.54 6.16 -2.39 -0.01 1.52 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.03 0.98 7.60 -2.39 -0.02 0.96 16 34 H 0.08 1.46 6.43 -2.39 -0.02 1.45 16 35 H 0.08 1.22 6.43 -2.39 -0.02 1.20 16 36 H 0.08 1.21 6.56 -2.39 -0.02 1.20 16 37 H 0.06 0.83 6.43 -2.39 -0.02 0.81 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.83 6.32 -2.39 -0.02 0.81 16 40 H 0.41 10.45 6.49 -92.71 -0.60 9.84 16 41 H 0.13 4.04 6.38 -2.91 -0.02 4.02 16 42 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 44 H 0.29 15.03 8.30 -92.71 -0.77 14.26 16 45 H 0.10 6.12 5.75 -2.91 -0.02 6.11 16 Total: -1.00 -68.77 343.76 5.49 -63.28 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.40 Total: 37.72 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 4.30 Total: -44.28 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -1.19 Total: -69.78 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.05 Total: -29.35 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -68.77 5.49 -63.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172732107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.716 kcal (2) G-P(sol) polarization free energy of solvation -68.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds