Wall clock time and date at job start Tue Mar 31 2020 06:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 C 1.50701 * 109.47212 * 59.99871 * 4 2 1 6 6 H 1.07998 * 120.00129 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99861 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00346 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99914 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46938 * 59.99701 * 9 7 5 11 11 H 1.48494 * 109.46914 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46872 * 299.99704 * 9 7 5 13 13 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 14 14 N 1.46898 * 109.47123 * 299.99884 * 13 2 1 15 15 C 1.46902 * 111.00157 * 179.97438 * 14 13 2 16 16 H 1.09001 * 110.72397 * 34.30641 * 15 14 13 17 17 C 1.54344 * 110.82430 * 270.89632 * 15 14 13 18 18 C 1.51367 * 105.17087 * 268.11546 * 17 15 14 19 19 C 1.38498 * 130.39387 * 162.79906 * 18 17 15 20 20 C 1.38106 * 120.21781 * 180.02562 * 19 18 17 21 21 C 1.38253 * 119.93415 * 0.02562 * 20 19 18 22 22 C 1.38103 * 119.93491 * 359.97438 * 21 20 19 23 23 C 1.38215 * 109.75846 * 342.82091 * 18 17 15 24 24 C 1.51892 * 109.81234 * 359.96795 * 23 18 17 25 25 H 1.08996 * 110.48762 * 136.07802 * 24 23 18 26 26 O 1.42902 * 110.37262 * 258.40207 * 24 23 18 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 1.09002 * 109.47153 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47289 * 299.99953 * 4 2 1 35 35 H 0.96993 * 120.00442 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47375 * 59.99966 * 13 2 1 37 37 H 1.09002 * 109.46777 * 180.02562 * 13 2 1 38 38 H 1.00898 * 111.00042 * 303.95611 * 14 13 2 39 39 H 1.09003 * 110.30185 * 27.04088 * 17 15 14 40 40 H 1.08999 * 110.30328 * 149.09001 * 17 15 14 41 41 H 1.08007 * 119.89002 * 0.02562 * 19 18 17 42 42 H 1.07995 * 120.03086 * 180.02562 * 20 19 18 43 43 H 1.07997 * 120.03219 * 179.97438 * 21 20 19 44 44 H 1.07999 * 119.89838 * 179.97438 * 22 21 20 45 45 H 0.96701 * 113.99505 * 295.47424 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6265 -1.5512 -3.8528 9 14 1.2471 0.3983 -5.2572 10 1 1.7420 1.7983 -5.2576 11 1 1.7422 -0.3016 -6.4697 12 1 -0.2380 0.3981 -5.2567 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0289 2.4486 15 6 2.0209 -0.6954 3.6703 16 1 3.0180 -1.1107 3.5235 17 6 1.0295 -1.7920 4.1136 18 6 0.0838 -1.1055 5.0757 19 6 -1.1650 -1.4902 5.5348 20 6 -1.8553 -0.6903 6.4242 21 6 -1.2991 0.4987 6.8578 22 6 -0.0540 0.8841 6.4012 23 6 0.6401 0.0830 5.5097 24 6 2.0029 0.2780 4.8680 25 1 2.1183 1.3052 4.5223 26 8 3.0404 -0.0545 5.7927 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 3.1301 -0.7207 -1.2495 34 1 1.6767 -1.7488 -1.2494 35 1 2.8608 -1.8826 -4.7337 36 1 1.6767 -1.7490 1.2492 37 1 3.1301 -0.7209 1.2493 38 1 1.8198 0.9435 2.4401 39 1 0.4810 -2.1762 3.2535 40 1 1.5601 -2.6013 4.6152 41 1 -1.6004 -2.4188 5.1962 42 1 -2.8287 -0.9934 6.7806 43 1 -1.8377 1.1256 7.5530 44 1 0.3798 1.8133 6.7400 45 1 3.0776 0.5240 6.5667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174401001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:52 Heat of formation + Delta-G solvation = -55.635259 kcal Electronic energy + Delta-G solvation = -23155.603589 eV Core-core repulsion = 19943.179676 eV Total energy + Delta-G solvation = -3212.423913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34207 -39.15706 -37.86157 -36.15694 -34.58653 -33.09849 -31.95753 -29.38712 -28.52858 -27.97430 -27.71213 -26.37134 -24.32437 -23.08284 -21.95701 -21.34570 -19.54499 -18.58012 -18.31815 -17.31757 -16.86500 -16.57151 -16.24230 -16.20350 -15.38660 -15.38090 -14.93495 -14.73556 -14.48783 -14.08237 -14.00580 -13.90793 -13.80014 -13.48357 -13.14526 -12.79835 -12.79241 -12.63299 -12.58325 -12.34360 -12.24983 -12.14006 -11.91800 -11.86602 -11.67925 -11.38021 -11.02977 -10.86102 -10.74416 -10.49398 -9.73824 -9.48606 -9.38898 -8.13270 -6.20406 0.42983 0.51903 1.41336 1.43602 1.50870 2.44095 2.76069 2.92855 3.20603 3.32749 3.48907 3.84333 3.95484 4.13517 4.15884 4.19166 4.24103 4.28451 4.37521 4.48173 4.58676 4.68518 4.73108 4.77028 4.82665 4.86325 4.91013 4.96092 5.08037 5.14199 5.21845 5.22107 5.25942 5.52123 5.54268 5.54607 5.58729 5.63170 5.65136 5.75418 5.87239 5.93084 6.03740 6.13212 6.36891 6.44579 6.78276 6.94597 7.46903 8.98956 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026994 B = 0.003279 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.004242 B = 8536.758542 C = 8844.926685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.054 4.054 3 C -0.122 4.122 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.066 0.934 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.085 3.915 14 N -0.664 5.664 15 C 0.088 3.912 16 H 0.058 0.942 17 C -0.072 4.072 18 C -0.082 4.082 19 C -0.130 4.130 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.102 4.102 23 C -0.145 4.145 24 C 0.154 3.846 25 H 0.079 0.921 26 O -0.567 6.567 27 H 0.039 0.961 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.047 0.953 33 H -0.016 1.016 34 H -0.016 1.016 35 H 0.260 0.740 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.347 0.653 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 5.610 23.808 25.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.054 4.054 3 C -0.180 4.180 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.194 1.194 13 C -0.045 4.045 14 N -0.298 5.298 15 C -0.022 4.022 16 H 0.076 0.924 17 C -0.110 4.110 18 C -0.082 4.082 19 C -0.148 4.148 20 C -0.134 4.134 21 C -0.150 4.150 22 C -0.120 4.120 23 C -0.145 4.145 24 C 0.094 3.906 25 H 0.096 0.904 26 O -0.375 6.375 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.003 0.997 34 H 0.002 0.998 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.168 0.832 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.143 0.857 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.159 0.841 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.998 4.726 23.263 24.484 hybrid contribution 0.802 0.419 -0.949 1.311 sum -5.196 5.145 22.314 23.481 Atomic orbital electron populations 1.21491 0.94333 1.00021 1.00437 1.20482 0.96230 0.95670 0.93018 1.21687 0.99534 0.95512 1.01246 1.18993 0.93973 0.94068 0.92645 1.21594 1.30275 1.11999 0.91444 0.91565 1.25920 0.95699 0.95889 1.02574 1.70099 1.38836 1.24937 1.24094 0.85636 0.78923 0.78823 0.78500 1.19211 1.21399 1.19352 1.21865 0.95874 0.97626 0.89088 1.60476 1.63165 1.06380 0.99811 1.21990 0.96732 0.94577 0.88909 0.92441 1.21082 0.95397 0.97143 0.97354 1.20637 0.94910 0.95865 0.96756 1.20895 0.94052 1.01045 0.98850 1.21386 1.00462 0.94762 0.96792 1.21367 0.95596 0.97181 1.00866 1.20914 0.95053 0.99607 0.96405 1.21288 0.97416 0.96352 0.99451 1.21207 0.83163 0.97802 0.88392 0.90375 1.86491 1.52839 1.61047 1.37139 0.94238 0.95208 0.91576 0.91395 0.94345 0.93368 0.99738 0.99811 0.93166 0.92413 0.96156 0.83231 0.90811 0.89935 0.85668 0.83784 0.83389 0.84149 0.75239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.05 8.06 71.98 0.58 -3.47 16 2 C -0.05 -2.13 0.60 -52.18 -0.03 -2.16 16 3 C -0.12 -4.38 7.89 71.98 0.57 -3.81 16 4 C 0.04 2.13 4.04 29.85 0.12 2.25 16 5 C -0.52 -28.61 7.65 25.60 0.20 -28.41 16 6 H 0.07 3.51 5.68 -2.91 -0.02 3.50 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 8 N -0.94 -57.76 13.29 21.45 0.28 -57.48 16 9 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 C 0.08 2.91 4.52 86.30 0.39 3.30 16 14 N -0.66 -18.47 5.55 -486.86 -2.70 -21.17 16 15 C 0.09 2.26 3.09 45.83 0.14 2.40 16 16 H 0.06 1.60 7.83 -2.39 -0.02 1.58 16 17 C -0.07 -1.84 6.47 30.52 0.20 -1.64 16 18 C -0.08 -1.97 6.14 -19.60 -0.12 -2.09 16 19 C -0.13 -2.81 10.04 22.30 0.22 -2.58 16 20 C -0.12 -2.03 10.05 22.24 0.22 -1.81 16 21 C -0.13 -2.11 10.05 22.24 0.22 -1.88 16 22 C -0.10 -1.76 10.04 22.30 0.22 -1.54 16 23 C -0.14 -3.11 5.83 -19.42 -0.11 -3.22 16 24 C 0.15 3.25 3.94 30.69 0.12 3.37 16 25 H 0.08 1.45 7.60 -2.39 -0.02 1.44 16 26 O -0.57 -11.38 13.36 -148.98 -1.99 -13.37 16 27 H 0.04 1.61 6.62 -2.39 -0.02 1.59 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 30 H 0.07 1.94 6.57 -2.39 -0.02 1.93 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 33 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 35 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.06 2.10 8.04 -2.39 -0.02 2.08 16 37 H 0.02 0.72 8.08 -2.39 -0.02 0.70 16 38 H 0.35 8.81 6.17 -89.70 -0.55 8.26 16 39 H 0.07 2.05 7.99 -2.39 -0.02 2.03 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 44 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.40 4.34 9.12 -74.06 -0.68 3.67 16 Total: -1.00 -67.38 356.09 0.78 -66.60 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.25 Total: 19.87 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 3.41 Total: -41.08 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -2.42 Total: -78.65 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.99 Total: -13.37 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.38 0.78 -66.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174401001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.967 kcal (2) G-P(sol) polarization free energy of solvation -67.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds