Wall clock time and date at job start Tue Mar 31 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47153 * 2 1 4 4 C 1.38238 * 119.99765 * 89.99540 * 3 2 1 5 5 C 1.38233 * 119.99635 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00237 * 0.02566 * 5 4 3 7 7 C 1.50703 * 120.00108 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46963 * 305.45007 * 7 6 5 9 9 C 1.52992 * 109.47000 * 185.44292 * 7 6 5 10 10 C 1.50709 * 109.46862 * 65.44630 * 7 6 5 11 11 O 1.21281 * 119.99906 * 5.56667 * 10 7 6 12 12 N 1.34771 * 119.99571 * 185.56505 * 10 7 6 13 13 C 1.46503 * 119.99501 * 180.02562 * 12 10 7 14 14 H 1.08991 * 109.47390 * 324.99908 * 13 12 10 15 15 C 1.52999 * 109.47031 * 85.00235 * 13 12 10 16 16 C 1.50703 * 109.47098 * 204.99552 * 13 12 10 17 17 H 1.08003 * 119.99629 * 354.31519 * 16 13 12 18 18 C 1.37875 * 120.00126 * 174.30693 * 16 13 12 19 19 N 1.31516 * 119.99915 * 156.53685 * 18 16 13 20 20 Si 1.86804 * 119.99983 * 336.81226 * 18 16 13 21 21 H 1.48503 * 109.46861 * 179.72251 * 20 18 16 22 22 H 1.48500 * 109.46903 * 299.72233 * 20 18 16 23 23 H 1.48494 * 109.46982 * 59.72401 * 20 18 16 24 24 C 1.38233 * 119.99737 * 0.25192 * 6 5 4 25 25 C 1.38231 * 120.00353 * 359.49481 * 24 6 5 26 26 H 1.09000 * 109.46615 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46953 * 300.00011 * 1 2 3 28 28 H 1.08998 * 109.47086 * 60.00132 * 1 2 3 29 29 H 1.09003 * 109.47282 * 239.99630 * 2 1 3 30 30 H 1.08998 * 109.47086 * 119.99868 * 2 1 3 31 31 H 1.07999 * 120.00057 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.99760 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.46638 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.46653 * 299.99678 * 8 7 6 35 35 H 1.08994 * 109.47321 * 60.00256 * 8 7 6 36 36 H 1.08998 * 109.47808 * 300.00479 * 9 7 6 37 37 H 1.09007 * 109.46934 * 60.00693 * 9 7 6 38 38 H 1.09008 * 109.47113 * 179.97438 * 9 7 6 39 39 H 0.97001 * 120.00474 * 0.02562 * 12 10 7 40 40 H 1.09003 * 109.47186 * 173.32075 * 15 13 12 41 41 H 1.09001 * 109.47379 * 293.32016 * 15 13 12 42 42 H 1.09003 * 109.47690 * 53.32542 * 15 13 12 43 43 H 0.96999 * 119.99619 * 355.21397 * 19 18 16 44 44 H 1.08007 * 119.99912 * 179.72826 * 24 6 5 45 45 H 1.07996 * 120.00163 * 180.25338 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7240 3.3756 1.1972 6 6 2.9545 4.0272 0.0001 7 6 3.4568 5.4480 0.0001 8 6 2.5188 6.3206 0.8366 9 6 3.4979 5.9744 -1.4359 10 6 4.8427 5.4908 0.5906 11 8 5.4105 4.4590 0.8804 12 7 5.4510 6.6756 0.7967 13 6 6.7985 6.7172 1.3702 14 1 6.9096 5.9114 2.0957 15 6 7.8326 6.5462 0.2557 16 6 7.0124 8.0426 2.0549 17 1 6.2603 8.8145 1.9840 18 6 8.1680 8.2697 2.7717 19 7 8.5850 9.5004 2.9742 20 14 9.1455 6.8289 3.4486 21 1 10.3402 7.3367 4.1699 22 1 8.2956 6.0505 4.3851 23 1 9.5778 5.9544 2.3291 24 6 2.7187 3.3774 -1.1971 25 6 2.2624 2.0726 -1.1971 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0830 1.5632 2.1325 32 1 2.9043 3.8845 2.1325 33 1 2.8820 7.3483 0.8362 34 1 1.5165 6.2896 0.4094 35 1 2.4897 5.9455 1.8596 36 1 4.1661 5.3528 -2.0319 37 1 2.4955 5.9435 -1.8630 38 1 3.8608 7.0023 -1.4359 39 1 4.9968 7.5009 0.5652 40 1 8.8330 6.6951 0.6623 41 1 7.7555 5.5418 -0.1607 42 1 7.6464 7.2800 -0.5286 43 1 8.1192 10.2444 2.5615 44 1 2.8946 3.8880 -2.1324 45 1 2.0821 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175945487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:15 Heat of formation + Delta-G solvation = -38.274520 kcal Electronic energy + Delta-G solvation = -23310.824575 eV Core-core repulsion = 20099.153480 eV Total energy + Delta-G solvation = -3211.671095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.34041 -38.64994 -35.77610 -34.81921 -33.31269 -32.27833 -30.97918 -29.58937 -28.45442 -27.38981 -24.87336 -24.37116 -23.08325 -22.22249 -21.15631 -19.97961 -19.10659 -17.68901 -16.61515 -16.13895 -15.49135 -15.36470 -14.65380 -14.38265 -14.09911 -13.90481 -13.67632 -13.34646 -13.33744 -13.24392 -12.73730 -12.50661 -12.47384 -12.18708 -12.11529 -12.02072 -11.75454 -11.57500 -11.51783 -11.33958 -11.31789 -11.12210 -10.65507 -10.55924 -10.48100 -10.09802 -9.83404 -9.15031 -9.05196 -8.75386 -8.38641 -8.29119 -8.12405 -6.59575 -4.20318 1.44147 1.56060 3.28742 3.41155 3.46033 3.61557 3.74617 4.17370 4.44384 4.56733 4.75002 4.77504 4.93085 5.02814 5.10150 5.11604 5.21707 5.24778 5.34390 5.41553 5.52967 5.56112 5.62483 5.70003 5.75810 5.80477 5.87130 5.88041 5.98381 6.07794 6.17040 6.19459 6.21806 6.41326 6.55605 6.58039 6.69399 6.70038 6.78022 6.98909 7.12971 7.31796 7.43712 7.69498 8.24643 8.52203 8.71695 9.02252 9.45512 10.78635 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025694 B = 0.003788 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.478222 B = 7389.829526 C = 7838.857247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.118 4.118 5 C -0.088 4.088 6 C -0.051 4.051 7 C -0.047 4.047 8 C -0.137 4.137 9 C -0.140 4.140 10 C 0.512 3.488 11 O -0.547 6.547 12 N -0.700 5.700 13 C 0.244 3.756 14 H 0.039 0.961 15 C -0.155 4.155 16 C -0.624 4.624 17 H 0.062 0.938 18 C 0.046 3.954 19 N -0.891 5.891 20 Si 1.033 2.967 21 H -0.283 1.283 22 H -0.281 1.281 23 H -0.274 1.274 24 C -0.114 4.114 25 C -0.122 4.122 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.391 0.609 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.042 0.958 43 H 0.270 0.730 44 H 0.124 0.876 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.109 -12.548 -8.411 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.136 4.136 5 C -0.106 4.106 6 C -0.052 4.052 7 C -0.051 4.051 8 C -0.195 4.195 9 C -0.197 4.197 10 C 0.296 3.704 11 O -0.425 6.425 12 N -0.348 5.348 13 C 0.141 3.859 14 H 0.057 0.943 15 C -0.214 4.214 16 C -0.661 4.661 17 H 0.080 0.920 18 C -0.162 4.162 19 N -0.523 5.523 20 Si 0.860 3.140 21 H -0.209 1.209 22 H -0.207 1.207 23 H -0.200 1.200 24 C -0.132 4.132 25 C -0.140 4.140 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.225 0.775 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.142 0.858 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.339 -13.629 -7.258 21.072 hybrid contribution -1.452 0.923 -1.024 2.002 sum -15.790 -12.707 -8.282 21.895 Atomic orbital electron populations 1.21742 0.94958 1.01396 1.02165 1.20513 0.95948 0.92995 1.02631 1.19816 0.99884 0.95985 0.93311 1.20925 1.00568 0.94784 0.97335 1.20913 0.97313 0.94610 0.97725 1.19308 0.98250 0.94180 0.93431 1.19778 0.94115 0.93649 0.97517 1.21878 0.98632 0.99185 0.99776 1.21906 1.02461 1.01483 0.93888 1.20223 0.86806 0.84492 0.78870 1.90660 1.66520 1.33261 1.52090 1.46269 1.18939 1.06917 1.62693 1.18960 0.77301 0.98361 0.91320 0.94306 1.22417 1.00630 0.98405 0.99928 1.22008 1.07201 0.98971 1.37926 0.91991 1.25618 0.95228 1.01087 0.94240 1.70873 1.38512 0.99589 1.43294 0.84191 0.76751 0.75517 0.77544 1.20855 1.20693 1.19996 1.21078 0.99725 0.94751 0.97644 1.20892 1.01037 0.94801 0.97226 0.92650 0.92585 0.92649 0.91278 0.91214 0.86453 0.86391 0.91517 0.91678 0.91847 0.91797 0.91432 0.91607 0.77520 0.92351 0.95280 0.93850 0.91971 0.85845 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.90 37.16 0.37 -0.78 16 2 C -0.08 -0.77 6.06 -27.88 -0.17 -0.94 16 3 C -0.09 -1.08 5.13 -104.62 -0.54 -1.62 16 4 C -0.12 -1.56 9.70 -39.58 -0.38 -1.94 16 5 C -0.09 -1.31 8.36 -39.58 -0.33 -1.64 16 6 C -0.05 -0.76 4.24 -104.62 -0.44 -1.20 16 7 C -0.05 -0.69 0.72 -156.81 -0.11 -0.80 16 8 C -0.14 -1.73 8.07 37.16 0.30 -1.43 16 9 C -0.14 -1.69 7.10 37.15 0.26 -1.42 16 10 C 0.51 9.96 6.31 -10.98 -0.07 9.89 16 11 O -0.55 -12.74 15.19 5.56 0.08 -12.66 16 12 N -0.70 -14.28 4.90 -54.93 -0.27 -14.55 16 13 C 0.24 5.94 2.16 -69.08 -0.15 5.79 16 14 H 0.04 1.03 6.15 -51.93 -0.32 0.72 16 15 C -0.16 -3.59 9.21 37.16 0.34 -3.25 16 16 C -0.62 -16.88 8.95 -34.44 -0.31 -17.19 16 17 H 0.06 1.74 7.96 -52.48 -0.42 1.33 16 18 C 0.05 1.29 5.20 -17.82 -0.09 1.20 16 19 N -0.89 -26.39 13.70 55.43 0.76 -25.63 16 20 Si 1.03 25.30 26.45 -169.99 -4.50 20.81 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.39 6.15 56.52 0.35 -6.05 16 24 C -0.11 -1.50 8.99 -39.59 -0.36 -1.86 16 25 C -0.12 -1.47 9.70 -39.59 -0.38 -1.85 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.80 7.26 -52.49 -0.38 1.42 16 33 H 0.07 0.81 7.27 -51.93 -0.38 0.43 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.84 7.10 -51.93 -0.37 0.47 16 36 H 0.06 0.80 7.27 -51.93 -0.38 0.42 16 37 H 0.07 0.66 7.76 -51.92 -0.40 0.26 16 38 H 0.06 0.76 7.97 -51.92 -0.41 0.35 16 39 H 0.39 7.12 7.44 -40.82 -0.30 6.82 16 40 H 0.06 1.38 5.49 -51.93 -0.28 1.10 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.27 7.90 8.73 -40.82 -0.36 7.54 16 44 H 0.12 1.40 5.91 -52.48 -0.31 1.09 16 45 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -31.67 357.85 -7.98 -39.65 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.39 Total: 6.03 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -2.06 Total: -19.04 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.49 Total: -40.18 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -4.50 Total: 20.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.67 -7.98 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175945487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.376 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds