Wall clock time and date at job start Tue Mar 31 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47153 * 2 1 4 4 C 1.38238 * 119.99765 * 89.99540 * 3 2 1 5 5 C 1.38233 * 119.99635 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00237 * 0.02566 * 5 4 3 7 7 C 1.50703 * 120.00108 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46963 * 305.45007 * 7 6 5 9 9 C 1.52992 * 109.47000 * 185.44292 * 7 6 5 10 10 C 1.50709 * 109.46862 * 65.44630 * 7 6 5 11 11 O 1.21281 * 119.99906 * 5.56667 * 10 7 6 12 12 N 1.34771 * 119.99571 * 185.56505 * 10 7 6 13 13 C 1.46503 * 119.99501 * 180.02562 * 12 10 7 14 14 H 1.08991 * 109.47390 * 324.99908 * 13 12 10 15 15 C 1.52999 * 109.47031 * 85.00235 * 13 12 10 16 16 C 1.50703 * 109.47098 * 204.99552 * 13 12 10 17 17 H 1.08003 * 119.99629 * 354.31519 * 16 13 12 18 18 C 1.37875 * 120.00126 * 174.30693 * 16 13 12 19 19 N 1.31516 * 119.99915 * 156.53685 * 18 16 13 20 20 Si 1.86804 * 119.99983 * 336.81226 * 18 16 13 21 21 H 1.48503 * 109.46861 * 179.72251 * 20 18 16 22 22 H 1.48500 * 109.46903 * 299.72233 * 20 18 16 23 23 H 1.48494 * 109.46982 * 59.72401 * 20 18 16 24 24 C 1.38233 * 119.99737 * 0.25192 * 6 5 4 25 25 C 1.38231 * 120.00353 * 359.49481 * 24 6 5 26 26 H 1.09000 * 109.46615 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46953 * 300.00011 * 1 2 3 28 28 H 1.08998 * 109.47086 * 60.00132 * 1 2 3 29 29 H 1.09003 * 109.47282 * 239.99630 * 2 1 3 30 30 H 1.08998 * 109.47086 * 119.99868 * 2 1 3 31 31 H 1.07999 * 120.00057 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.99760 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.46638 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.46653 * 299.99678 * 8 7 6 35 35 H 1.08994 * 109.47321 * 60.00256 * 8 7 6 36 36 H 1.08998 * 109.47808 * 300.00479 * 9 7 6 37 37 H 1.09007 * 109.46934 * 60.00693 * 9 7 6 38 38 H 1.09008 * 109.47113 * 179.97438 * 9 7 6 39 39 H 0.97001 * 120.00474 * 0.02562 * 12 10 7 40 40 H 1.09003 * 109.47186 * 173.32075 * 15 13 12 41 41 H 1.09001 * 109.47379 * 293.32016 * 15 13 12 42 42 H 1.09003 * 109.47690 * 53.32542 * 15 13 12 43 43 H 0.96999 * 119.99619 * 355.21397 * 19 18 16 44 44 H 1.08007 * 119.99912 * 179.72826 * 24 6 5 45 45 H 1.07996 * 120.00163 * 180.25338 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7240 3.3756 1.1972 6 6 2.9545 4.0272 0.0001 7 6 3.4568 5.4480 0.0001 8 6 2.5188 6.3206 0.8366 9 6 3.4979 5.9744 -1.4359 10 6 4.8427 5.4908 0.5906 11 8 5.4105 4.4590 0.8804 12 7 5.4510 6.6756 0.7967 13 6 6.7985 6.7172 1.3702 14 1 6.9096 5.9114 2.0957 15 6 7.8326 6.5462 0.2557 16 6 7.0124 8.0426 2.0549 17 1 6.2603 8.8145 1.9840 18 6 8.1680 8.2697 2.7717 19 7 8.5850 9.5004 2.9742 20 14 9.1455 6.8289 3.4486 21 1 10.3402 7.3367 4.1699 22 1 8.2956 6.0505 4.3851 23 1 9.5778 5.9544 2.3291 24 6 2.7187 3.3774 -1.1971 25 6 2.2624 2.0726 -1.1971 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0830 1.5632 2.1325 32 1 2.9043 3.8845 2.1325 33 1 2.8820 7.3483 0.8362 34 1 1.5165 6.2896 0.4094 35 1 2.4897 5.9455 1.8596 36 1 4.1661 5.3528 -2.0319 37 1 2.4955 5.9435 -1.8630 38 1 3.8608 7.0023 -1.4359 39 1 4.9968 7.5009 0.5652 40 1 8.8330 6.6951 0.6623 41 1 7.7555 5.5418 -0.1607 42 1 7.6464 7.2800 -0.5286 43 1 8.1192 10.2444 2.5615 44 1 2.8946 3.8880 -2.1324 45 1 2.0821 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175945487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:14 Heat of formation + Delta-G solvation = -56.523150 kcal Electronic energy + Delta-G solvation = -23311.615895 eV Core-core repulsion = 20099.153480 eV Total energy + Delta-G solvation = -3212.462415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60089 -39.91318 -37.09256 -36.51851 -34.61176 -33.91729 -31.97136 -31.31298 -29.43555 -28.36439 -26.92355 -25.36945 -24.31846 -23.25300 -22.43145 -21.48858 -20.67206 -19.53658 -17.95844 -17.47370 -16.89571 -16.41034 -15.97723 -15.72360 -15.46628 -15.08529 -14.96648 -14.61149 -14.57646 -14.36356 -14.19755 -14.16175 -13.74236 -13.37931 -13.34644 -13.25375 -13.13633 -12.96700 -12.65746 -12.49250 -12.45943 -12.19508 -12.04461 -11.90257 -11.77466 -11.58286 -11.51334 -11.24151 -10.60833 -10.47217 -9.89995 -9.75662 -9.39288 -8.82153 -6.43471 0.43516 0.55564 1.44177 1.46605 1.67861 1.76548 2.39650 2.43685 2.93046 2.95414 3.50540 3.76943 3.91914 3.95119 4.07543 4.08801 4.17124 4.38794 4.47452 4.52702 4.57080 4.64413 4.69053 4.72175 4.74523 4.76367 4.80982 4.81686 4.87720 5.06144 5.06434 5.10213 5.13256 5.20104 5.21972 5.26283 5.40419 5.41373 5.56506 5.64846 5.66742 5.74678 5.75565 6.01017 6.16050 6.52396 6.85105 7.25410 7.44311 8.55134 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025694 B = 0.003788 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.478222 B = 7389.829526 C = 7838.857247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.130 4.130 5 C -0.111 4.111 6 C -0.072 4.072 7 C -0.038 4.038 8 C -0.135 4.135 9 C -0.138 4.138 10 C 0.510 3.490 11 O -0.588 6.588 12 N -0.700 5.700 13 C 0.247 3.753 14 H 0.017 0.983 15 C -0.147 4.147 16 C -0.620 4.620 17 H 0.044 0.956 18 C 0.005 3.995 19 N -0.918 5.918 20 Si 1.064 2.936 21 H -0.278 1.278 22 H -0.276 1.276 23 H -0.256 1.256 24 C -0.119 4.119 25 C -0.125 4.125 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.402 0.598 40 H 0.050 0.950 41 H 0.034 0.966 42 H 0.053 0.947 43 H 0.262 0.738 44 H 0.143 0.857 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.534 -14.162 -10.179 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.148 4.148 5 C -0.129 4.129 6 C -0.073 4.073 7 C -0.041 4.041 8 C -0.192 4.192 9 C -0.195 4.195 10 C 0.297 3.703 11 O -0.468 6.468 12 N -0.349 5.349 13 C 0.142 3.858 14 H 0.035 0.965 15 C -0.206 4.206 16 C -0.658 4.658 17 H 0.062 0.938 18 C -0.198 4.198 19 N -0.552 5.552 20 Si 0.887 3.113 21 H -0.204 1.204 22 H -0.202 1.202 23 H -0.181 1.181 24 C -0.137 4.137 25 C -0.142 4.142 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.238 0.762 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.161 0.839 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.797 -15.229 -9.045 23.733 hybrid contribution -1.094 1.391 -0.476 1.833 sum -16.890 -13.838 -9.521 23.821 Atomic orbital electron populations 1.21715 0.93823 1.02420 1.01955 1.20577 0.96835 0.91191 1.03412 1.20185 0.98754 0.97267 0.92841 1.21139 1.00685 0.94377 0.98636 1.20965 0.98808 0.95654 0.97446 1.19418 0.99455 0.94381 0.94018 1.19745 0.90758 0.94622 0.98957 1.21891 0.99649 0.98741 0.98951 1.21945 1.04281 1.01389 0.91881 1.21111 0.88372 0.83172 0.77693 1.90630 1.68011 1.34524 1.53664 1.46109 1.17844 1.08143 1.62774 1.18673 0.79844 0.95823 0.91464 0.96493 1.22287 0.99640 0.99062 0.99582 1.22148 1.06389 0.99604 1.37612 0.93793 1.26650 0.96519 1.02147 0.94450 1.70959 1.39404 1.00065 1.44752 0.83759 0.76060 0.73629 0.77834 1.20380 1.20206 1.18118 1.21354 0.99283 0.95312 0.97712 1.21268 1.00058 0.94551 0.98365 0.91035 0.93187 0.92484 0.90027 0.90949 0.85413 0.88089 0.91160 0.89035 0.93227 0.92253 0.88416 0.91132 0.76248 0.93135 0.94682 0.92794 0.92894 0.83942 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.90 71.98 0.71 -1.16 16 2 C -0.08 -1.32 6.06 29.85 0.18 -1.14 16 3 C -0.09 -2.01 5.13 -19.86 -0.10 -2.11 16 4 C -0.13 -3.37 9.70 22.27 0.22 -3.16 16 5 C -0.11 -3.33 8.36 22.27 0.19 -3.14 16 6 C -0.07 -2.06 4.24 -19.87 -0.08 -2.15 16 7 C -0.04 -1.06 0.72 -53.67 -0.04 -1.09 16 8 C -0.13 -3.25 8.07 71.98 0.58 -2.67 16 9 C -0.14 -2.97 7.10 71.98 0.51 -2.46 16 10 C 0.51 19.74 6.31 87.66 0.55 20.29 16 11 O -0.59 -27.63 15.19 -3.03 -0.05 -27.67 16 12 N -0.70 -28.40 4.90 -446.09 -2.19 -30.59 16 13 C 0.25 12.02 2.16 44.25 0.10 12.11 16 14 H 0.02 0.92 6.15 -2.39 -0.01 0.91 16 15 C -0.15 -6.69 9.21 71.98 0.66 -6.02 16 16 C -0.62 -33.90 8.95 25.60 0.23 -33.67 16 17 H 0.04 2.52 7.96 -2.91 -0.02 2.49 16 18 C 0.00 0.28 5.20 84.65 0.44 0.72 16 19 N -0.92 -55.10 13.70 21.45 0.29 -54.81 16 20 Si 1.06 51.10 26.45 68.60 1.81 52.91 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 23 H -0.26 -11.51 6.15 99.48 0.61 -10.90 16 24 C -0.12 -2.86 8.99 22.27 0.20 -2.66 16 25 C -0.12 -2.68 9.70 22.27 0.22 -2.47 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 30 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 31 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.10 3.25 7.26 -2.91 -0.02 3.23 16 33 H 0.07 1.61 7.27 -2.39 -0.02 1.60 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.32 7.10 -2.39 -0.02 1.30 16 36 H 0.06 1.34 7.27 -2.39 -0.02 1.32 16 37 H 0.10 1.54 7.76 -2.38 -0.02 1.52 16 38 H 0.07 1.45 7.97 -2.38 -0.02 1.43 16 39 H 0.40 14.45 7.44 -92.71 -0.69 13.76 16 40 H 0.05 2.34 5.49 -2.39 -0.01 2.33 16 41 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.26 15.65 8.73 -92.71 -0.81 14.84 16 44 H 0.14 2.77 5.91 -2.91 -0.02 2.76 16 45 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -68.72 357.85 4.58 -64.13 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.15 Total: 26.79 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 4.56 Total: -30.77 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.89 Total: -85.40 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.05 Total: -27.67 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 1.81 Total: 52.91 kcal Total: -68.72 4.58 -64.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175945487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.612 kcal (2) G-P(sol) polarization free energy of solvation -68.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds