Wall clock time and date at job start Tue Mar 31 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46974 * 2 1 4 4 C 1.38232 * 120.00409 * 90.00081 * 3 2 1 5 5 C 1.38232 * 120.00264 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99851 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00217 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47082 * 305.93993 * 7 6 5 9 9 C 1.52989 * 109.47471 * 185.93634 * 7 6 5 10 10 C 1.50701 * 109.46658 * 65.93625 * 7 6 5 11 11 O 1.21277 * 120.00690 * 355.56596 * 10 7 6 12 12 N 1.34781 * 119.99930 * 175.56314 * 10 7 6 13 13 C 1.46493 * 120.00215 * 180.02562 * 12 10 7 14 14 H 1.09002 * 109.47623 * 35.00006 * 13 12 10 15 15 C 1.53006 * 109.46987 * 274.99933 * 13 12 10 16 16 C 1.50700 * 109.47361 * 155.00263 * 13 12 10 17 17 H 1.08006 * 120.00012 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00175 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00003 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99964 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47225 * 269.99644 * 20 18 16 22 22 H 1.48500 * 109.47313 * 29.99979 * 20 18 16 23 23 H 1.48503 * 109.47273 * 149.99953 * 20 18 16 24 24 C 1.38229 * 120.00157 * 0.26156 * 6 5 4 25 25 C 1.38235 * 119.99553 * 270.01560 * 3 2 1 26 26 H 1.08995 * 109.47338 * 300.00199 * 1 2 3 27 27 H 1.09000 * 109.46744 * 60.00669 * 1 2 3 28 28 H 1.09003 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47334 * 239.99252 * 2 1 3 30 30 H 1.09004 * 109.47179 * 119.99168 * 2 1 3 31 31 H 1.08007 * 119.99803 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.00224 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47112 * 179.97438 * 8 7 6 34 34 H 1.08993 * 109.47138 * 299.99779 * 8 7 6 35 35 H 1.09005 * 109.46774 * 59.99827 * 8 7 6 36 36 H 1.09000 * 109.47431 * 300.00107 * 9 7 6 37 37 H 1.09004 * 109.47206 * 60.00396 * 9 7 6 38 38 H 1.09003 * 109.47371 * 179.97438 * 9 7 6 39 39 H 0.97009 * 119.99616 * 0.02562 * 12 10 7 40 40 H 1.08999 * 109.47192 * 299.99954 * 15 13 12 41 41 H 1.09001 * 109.46962 * 60.00408 * 15 13 12 42 42 H 1.09003 * 109.46937 * 180.02562 * 15 13 12 43 43 H 0.97004 * 120.00260 * 180.02562 * 19 18 16 44 44 H 1.08001 * 120.00670 * 179.72530 * 24 6 5 45 45 H 1.07998 * 120.00223 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1970 6 6 2.9543 4.0272 -0.0001 7 6 3.4566 5.4481 -0.0003 8 6 2.5255 6.3183 0.8464 9 6 3.4859 5.9786 -1.4349 10 6 4.8472 5.4892 0.5790 11 8 5.3470 4.4798 1.0287 12 7 5.5356 6.6478 0.5974 13 6 6.8876 6.6877 1.1600 14 1 7.3996 5.7503 0.9425 15 6 6.8039 6.8835 2.6752 16 6 7.6531 7.8321 0.5473 17 1 7.1800 8.4660 -0.1881 18 6 8.9579 8.0692 0.9246 19 7 9.5342 7.2970 1.8197 20 14 9.9070 9.4873 0.1646 21 1 10.6075 9.0158 -1.0569 22 1 8.9648 10.5774 -0.1948 23 1 10.9032 9.9961 1.1412 24 6 2.7182 3.3776 -1.1972 25 6 2.2623 2.0725 -1.1972 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 1.8934 -0.5137 0.8901 31 1 2.0823 1.5636 2.1325 32 1 2.9036 3.8849 2.1323 33 1 2.8890 7.3458 0.8467 34 1 1.5197 6.2885 0.4275 35 1 2.5047 5.9402 1.8686 36 1 4.1492 5.3587 -2.0381 37 1 2.4800 5.9488 -1.8539 38 1 3.8488 7.0064 -1.4350 39 1 5.1357 7.4553 0.2380 40 1 6.2920 7.8209 2.8927 41 1 6.2503 6.0557 3.1184 42 1 7.8099 6.9136 3.0937 43 1 10.4521 7.4640 2.0854 44 1 2.8939 3.8881 -2.1326 45 1 2.0817 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175945502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:17 Heat of formation + Delta-G solvation = -55.216071 kcal Electronic energy + Delta-G solvation = -23230.369991 eV Core-core repulsion = 20017.964255 eV Total energy + Delta-G solvation = -3212.405736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.53762 -39.85168 -37.00057 -36.45263 -34.51797 -33.76988 -31.94014 -30.78715 -29.38110 -28.31338 -27.35036 -25.33850 -24.34441 -23.24911 -22.55795 -21.51095 -20.45255 -18.79045 -17.63952 -17.32523 -16.93773 -16.40679 -16.21473 -15.83695 -15.38190 -15.07897 -14.91036 -14.55940 -14.43046 -14.26099 -14.16376 -13.77587 -13.43755 -13.30424 -13.16348 -13.01221 -12.90326 -12.86522 -12.74979 -12.62187 -12.44882 -12.27743 -12.15826 -12.12540 -11.88227 -11.56553 -11.48853 -11.11511 -10.64692 -10.46902 -9.74939 -9.71102 -9.36852 -8.17939 -6.35757 0.45462 0.57560 1.44367 1.44943 1.55797 1.86107 2.34834 2.58569 3.00158 3.12455 3.55407 3.81745 3.95206 3.99166 4.11084 4.14472 4.19783 4.40426 4.54163 4.58582 4.68548 4.72341 4.75084 4.77016 4.85014 4.85787 4.90049 4.93195 5.07915 5.08864 5.11063 5.16210 5.23191 5.23644 5.29446 5.41023 5.43956 5.58850 5.61659 5.68766 5.76456 5.77984 5.91177 6.09546 6.18093 6.72549 6.99491 7.32232 7.58734 8.88444 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030543 B = 0.003415 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.508863 B = 8198.072077 C = 8410.306634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.133 4.133 5 C -0.104 4.104 6 C -0.075 4.075 7 C -0.038 4.038 8 C -0.131 4.131 9 C -0.139 4.139 10 C 0.507 3.493 11 O -0.595 6.595 12 N -0.702 5.702 13 C 0.272 3.728 14 H -0.007 1.007 15 C -0.132 4.132 16 C -0.545 4.545 17 H 0.074 0.926 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.973 3.027 21 H -0.278 1.278 22 H -0.258 1.258 23 H -0.284 1.284 24 C -0.121 4.121 25 C -0.127 4.127 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.403 0.597 40 H 0.041 0.959 41 H 0.008 0.992 42 H 0.065 0.935 43 H 0.265 0.735 44 H 0.142 0.858 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.638 -6.462 -6.563 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.151 4.151 5 C -0.123 4.123 6 C -0.076 4.076 7 C -0.041 4.041 8 C -0.189 4.189 9 C -0.196 4.196 10 C 0.293 3.707 11 O -0.476 6.476 12 N -0.350 5.350 13 C 0.169 3.831 14 H 0.011 0.989 15 C -0.191 4.191 16 C -0.583 4.583 17 H 0.093 0.907 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.798 3.202 21 H -0.204 1.204 22 H -0.182 1.182 23 H -0.210 1.210 24 C -0.139 4.139 25 C -0.144 4.144 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.238 0.762 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.160 0.840 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.098 -7.173 -6.138 21.304 hybrid contribution 1.098 0.848 0.149 1.395 sum -18.000 -6.325 -5.989 19.997 Atomic orbital electron populations 1.21710 0.93704 1.02428 1.01990 1.20575 0.96938 0.91161 1.03347 1.20183 0.98805 0.97269 0.92840 1.21151 1.00846 0.94459 0.98609 1.20953 0.98273 0.95570 0.97472 1.19469 0.99441 0.94679 0.93976 1.19753 0.90787 0.94561 0.99007 1.21857 0.99480 0.98863 0.98671 1.21967 1.04132 1.01501 0.92041 1.21138 0.88214 0.82941 0.78358 1.90636 1.71651 1.35649 1.49629 1.46240 1.17165 1.10807 1.60835 1.18295 0.78688 0.95545 0.90581 0.98879 1.21889 1.01335 0.97406 0.98491 1.21547 0.98164 1.14123 1.24489 0.90746 1.25830 0.98420 0.99222 0.95237 1.70063 1.13721 1.39872 1.32085 0.85330 0.78215 0.78910 0.77794 1.20398 1.18169 1.20994 1.21374 0.99379 0.95378 0.97775 1.21263 1.00249 0.94557 0.98367 0.93113 0.92469 0.91015 0.90128 0.90984 0.85392 0.88008 0.90678 0.89005 0.93280 0.92769 0.88391 0.90771 0.76154 0.93967 0.97257 0.91580 0.92589 0.84032 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 71.98 0.71 -1.27 16 2 C -0.08 -1.43 6.06 29.85 0.18 -1.25 16 3 C -0.09 -2.16 5.13 -19.87 -0.10 -2.26 16 4 C -0.13 -3.63 9.70 22.27 0.22 -3.42 16 5 C -0.10 -3.31 8.15 22.27 0.18 -3.13 16 6 C -0.08 -2.28 4.33 -19.87 -0.09 -2.37 16 7 C -0.04 -1.11 0.72 -53.68 -0.04 -1.15 16 8 C -0.13 -3.14 8.17 71.98 0.59 -2.55 16 9 C -0.14 -3.21 7.01 71.98 0.50 -2.71 16 10 C 0.51 20.96 6.37 87.66 0.56 21.52 16 11 O -0.59 -30.55 14.99 -3.02 -0.05 -30.60 16 12 N -0.70 -29.70 4.89 -446.10 -2.18 -31.89 16 13 C 0.27 14.45 2.56 44.25 0.11 14.56 16 14 H -0.01 -0.42 7.58 -2.39 -0.02 -0.44 16 15 C -0.13 -6.89 9.26 71.98 0.67 -6.22 16 16 C -0.55 -29.10 8.73 25.60 0.22 -28.88 16 17 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 18 C 0.01 0.69 5.30 84.66 0.45 1.14 16 19 N -0.92 -53.51 11.32 21.45 0.24 -53.27 16 20 Si 0.97 42.17 29.54 68.60 2.03 44.20 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 C -0.12 -3.15 8.99 22.27 0.20 -2.95 16 25 C -0.13 -2.95 9.70 22.27 0.22 -2.74 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 30 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 31 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 32 H 0.10 3.43 7.23 -2.91 -0.02 3.40 16 33 H 0.07 1.63 7.88 -2.39 -0.02 1.62 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.29 7.08 -2.38 -0.02 1.27 16 36 H 0.05 1.36 7.25 -2.39 -0.02 1.34 16 37 H 0.10 1.64 7.78 -2.38 -0.02 1.63 16 38 H 0.07 1.59 7.33 -2.39 -0.02 1.57 16 39 H 0.40 14.31 7.43 -92.70 -0.69 13.62 16 40 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 43 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.14 3.05 5.91 -2.91 -0.02 3.04 16 45 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -70.10 360.84 4.90 -65.20 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.28 Total: 30.03 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 4.58 Total: -23.68 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -1.94 Total: -85.16 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.05 Total: -30.60 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -70.10 4.90 -65.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175945502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.986 kcal (2) G-P(sol) polarization free energy of solvation -70.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds