Wall clock time and date at job start Tue Mar 31 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47063 * 2 1 4 4 C 1.53001 * 115.54929 * 278.66959 * 3 2 1 5 5 N 1.46896 * 109.47393 * 303.08453 * 4 3 2 6 6 C 1.46891 * 111.00265 * 177.36962 * 5 4 3 7 7 H 1.09006 * 109.47530 * 325.00517 * 6 5 4 8 8 C 1.52995 * 109.47279 * 85.00260 * 6 5 4 9 9 C 1.50705 * 109.47304 * 205.00522 * 6 5 4 10 10 C 1.38300 * 119.92630 * 319.72657 * 9 6 5 11 11 C 1.38106 * 120.06449 * 179.72824 * 10 9 6 12 12 C 1.38880 * 119.93166 * 0.54390 * 11 10 9 13 13 O 1.35746 * 120.06957 * 179.74832 * 12 11 10 14 14 C 1.34828 * 116.99853 * 185.52393 * 13 12 11 15 15 H 1.07995 * 120.00613 * 5.29300 * 14 13 12 16 16 C 1.38653 * 119.99632 * 185.29685 * 14 13 12 17 17 N 1.31554 * 120.00651 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99807 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47421 * 89.99658 * 18 16 14 20 20 H 1.48504 * 109.47266 * 209.99857 * 18 16 14 21 21 H 1.48507 * 109.47372 * 329.99766 * 18 16 14 22 22 C 1.38880 * 119.85960 * 359.73049 * 12 11 10 23 23 C 1.38092 * 119.93287 * 359.97438 * 22 12 11 24 24 C 1.53001 * 117.49839 * 132.96153 * 3 2 1 25 25 C 1.53002 * 60.00169 * 252.50884 * 24 3 2 26 26 H 1.09000 * 109.47562 * 294.98890 * 1 2 3 27 27 H 1.09000 * 109.46878 * 54.99228 * 1 2 3 28 28 H 1.09005 * 109.46873 * 174.98851 * 1 2 3 29 29 H 1.08998 * 109.47000 * 119.99879 * 2 1 3 30 30 H 1.09000 * 109.47237 * 239.99731 * 2 1 3 31 31 H 1.09004 * 109.47117 * 63.08942 * 4 3 2 32 32 H 1.09004 * 109.46901 * 183.08280 * 4 3 2 33 33 H 1.00906 * 110.99600 * 53.42202 * 5 4 3 34 34 H 1.08998 * 109.47569 * 179.97438 * 8 6 5 35 35 H 1.09006 * 109.47324 * 300.00179 * 8 6 5 36 36 H 1.09000 * 109.47009 * 59.99889 * 8 6 5 37 37 H 1.07995 * 119.97009 * 0.02562 * 10 9 6 38 38 H 1.07998 * 120.03337 * 180.27033 * 11 10 9 39 39 H 0.96999 * 120.00547 * 180.02562 * 17 16 14 40 40 H 1.08006 * 120.03201 * 179.97438 * 22 12 11 41 41 H 1.08008 * 119.97133 * 180.02562 * 23 22 12 42 42 H 1.08993 * 117.50096 * 359.97438 * 24 3 2 43 43 H 1.09001 * 117.49536 * 145.02331 * 24 3 2 44 44 H 1.08997 * 117.50247 * 252.51533 * 25 24 3 45 45 H 1.09000 * 117.49925 * 107.48633 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0638 2.1339 -1.3646 5 7 2.8792 1.3462 -2.2986 6 6 2.8740 1.9480 -3.6386 7 1 1.8977 2.3917 -3.8340 8 6 3.9512 3.0317 -3.7152 9 6 3.1574 0.8844 -4.6681 10 6 4.1104 -0.0851 -4.4141 11 6 4.3684 -1.0644 -5.3531 12 6 3.6778 -1.0683 -6.5580 13 8 3.9328 -2.0265 -7.4851 14 6 3.3122 -1.9066 -8.6760 15 1 2.7151 -1.0321 -8.8882 16 6 3.4405 -2.9061 -9.6283 17 7 4.1681 -3.9713 -9.3702 18 14 2.5812 -2.7397 -11.2786 19 1 3.4821 -2.0526 -12.2387 20 1 2.2408 -4.0887 -11.7978 21 1 1.3376 -1.9453 -11.1114 22 6 2.7254 -0.0899 -6.8123 23 6 2.4677 0.8830 -5.8668 24 6 3.1475 1.8002 0.9932 25 6 1.7214 2.3044 1.2233 26 1 -0.3634 0.4341 0.9314 27 1 -0.3633 0.5896 -0.8417 28 1 -0.3633 -1.0238 -0.0898 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.0469 2.2146 -1.7489 32 1 2.4924 3.1306 -1.2594 33 1 2.5665 0.3874 -2.3317 34 1 3.9477 3.4780 -4.7097 35 1 3.7463 3.8010 -2.9706 36 1 4.9275 2.5881 -3.5199 37 1 4.6500 -0.0793 -3.4786 38 1 5.1096 -1.8238 -5.1525 39 1 4.2581 -4.6704 -10.0365 40 1 2.1870 -0.0901 -7.7486 41 1 1.7269 1.6439 -6.0637 42 1 3.5125 1.0081 1.6468 43 1 3.8934 2.5283 0.6744 44 1 1.5291 3.3642 1.0559 45 1 1.1484 1.8438 2.0281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182005327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:27 Heat of formation + Delta-G solvation = 7.921415 kcal Electronic energy + Delta-G solvation = -22523.932753 eV Core-core repulsion = 19314.264864 eV Total energy + Delta-G solvation = -3209.667889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.36985 -38.78869 -37.19078 -35.03721 -32.29566 -31.95601 -30.70346 -30.11548 -27.92125 -25.75687 -25.31347 -24.03217 -22.46449 -22.20807 -21.71965 -19.89454 -18.84986 -17.92502 -17.04806 -16.22697 -15.70957 -15.06088 -14.65963 -14.45804 -14.39480 -14.03304 -13.71655 -13.69029 -13.51328 -12.98365 -12.80313 -12.63578 -12.50440 -12.32031 -12.20894 -11.83409 -11.71783 -11.65910 -11.42382 -11.19984 -11.14260 -10.81261 -10.69682 -10.63600 -10.43060 -10.40632 -10.11234 -9.83906 -9.35808 -8.82538 -8.29008 -8.15790 -7.16996 -6.45380 -4.04151 2.23621 2.31484 3.12385 3.12952 3.17764 3.57253 3.96356 4.28506 4.53747 4.57404 4.63425 4.79250 4.90155 5.09905 5.13434 5.22399 5.32454 5.34874 5.42513 5.48469 5.50450 5.54049 5.62278 5.70691 5.72292 5.77364 5.86295 5.89971 5.97215 5.99631 6.01986 6.03920 6.09977 6.20692 6.25306 6.41423 6.49340 6.74464 6.88753 7.05732 7.09034 7.27632 7.43943 7.45491 7.58536 7.84554 7.99733 9.00366 9.71112 10.72722 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.002958 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.221713 B = 9462.958425 C = 9746.720380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.118 4.118 4 C 0.097 3.903 5 N -0.680 5.680 6 C 0.142 3.858 7 H 0.039 0.961 8 C -0.131 4.131 9 C -0.192 4.192 10 C -0.055 4.055 11 C -0.195 4.195 12 C 0.155 3.845 13 O -0.178 6.178 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.863 5.863 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.268 1.268 22 C -0.234 4.234 23 C -0.066 4.066 24 C -0.162 4.162 25 C -0.177 4.177 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.345 0.655 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 11.408 16.503 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.032 4.032 5 N -0.313 5.313 6 C 0.033 3.967 7 H 0.057 0.943 8 C -0.189 4.189 9 C -0.193 4.193 10 C -0.074 4.074 11 C -0.215 4.215 12 C 0.101 3.899 13 O -0.081 6.081 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.254 4.254 23 C -0.084 4.084 24 C -0.199 4.199 25 C -0.215 4.215 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.165 0.835 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.512 11.278 16.549 20.529 hybrid contribution -1.386 -0.091 -1.195 1.832 sum -5.898 11.187 15.354 19.892 Atomic orbital electron populations 1.21740 0.95693 1.01508 1.01693 1.21065 0.95593 0.93561 1.02447 1.21447 1.03521 0.95899 0.90972 1.21445 0.94992 0.96669 0.90100 1.60609 1.56618 1.06147 1.07908 1.20145 0.97036 0.93250 0.86269 0.94305 1.21765 0.99494 0.97229 1.00428 1.19270 1.03296 1.00155 0.96615 1.20498 0.96008 0.93081 0.97772 1.20251 1.04730 1.02607 0.93875 1.19434 0.92078 0.88782 0.89579 1.83992 1.60906 1.41677 1.21556 1.21309 1.30724 1.06358 0.88384 0.89148 1.25283 0.97111 0.94564 0.99551 1.70034 1.36668 1.07910 1.35145 0.85726 0.79278 0.78063 0.80441 1.19866 1.20248 1.19227 1.21119 1.03650 0.98895 1.01711 1.20584 0.97796 0.97018 0.93042 1.22986 0.91565 1.03322 1.02061 1.22980 0.99412 0.99522 0.99561 0.92928 0.92770 0.92726 0.91883 0.91032 0.95173 0.91238 0.83458 0.92760 0.93673 0.91988 0.86279 0.86599 0.92015 0.85660 0.87846 0.89120 0.88760 0.89112 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.74 37.16 0.36 -0.95 16 2 C -0.09 -0.84 5.83 -26.73 -0.16 -0.99 16 3 C -0.12 -1.11 1.78 -154.51 -0.28 -1.39 16 4 C 0.10 1.03 5.44 -3.83 -0.02 1.01 16 5 N -0.68 -8.39 5.71 -107.96 -0.62 -9.00 16 6 C 0.14 1.93 2.81 -68.87 -0.19 1.74 16 7 H 0.04 0.52 7.62 -51.93 -0.40 0.13 16 8 C -0.13 -1.67 9.39 37.15 0.35 -1.32 16 9 C -0.19 -3.23 4.71 -104.57 -0.49 -3.72 16 10 C -0.06 -0.98 9.00 -39.61 -0.36 -1.34 16 11 C -0.20 -4.13 9.99 -39.39 -0.39 -4.52 16 12 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 13 O -0.18 -5.10 9.76 0.07 0.00 -5.10 16 14 C -0.39 -10.97 9.44 30.89 0.29 -10.68 16 15 H 0.09 2.35 5.29 -52.49 -0.28 2.07 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.36 13.67 55.48 0.76 -24.61 16 18 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 22 C -0.23 -5.09 9.14 -39.40 -0.36 -5.45 16 23 C -0.07 -1.20 9.66 -39.61 -0.38 -1.58 16 24 C -0.16 -1.45 9.87 -26.73 -0.26 -1.72 16 25 C -0.18 -1.45 9.59 -26.73 -0.26 -1.71 16 26 H 0.05 0.42 7.77 -51.93 -0.40 0.01 16 27 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.56 7.93 -51.93 -0.41 0.15 16 30 H 0.07 0.75 6.26 -51.93 -0.33 0.42 16 31 H 0.03 0.33 7.75 -51.93 -0.40 -0.07 16 32 H 0.07 0.73 7.46 -51.93 -0.39 0.34 16 33 H 0.34 4.48 6.04 -39.29 -0.24 4.24 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.51 7.50 -51.93 -0.39 0.12 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.12 1.90 7.72 -52.49 -0.41 1.49 16 38 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.13 2.74 5.71 -52.48 -0.30 2.44 16 41 H 0.10 1.63 8.03 -52.48 -0.42 1.21 16 42 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -29.23 364.63 -9.16 -38.39 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.27 Total: 7.45 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -2.51 Total: -28.15 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.14 Total: -33.61 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.23 -9.16 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182005327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.315 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds