Wall clock time and date at job start Tue Mar 31 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47063 * 2 1 4 4 C 1.53001 * 115.54929 * 278.66959 * 3 2 1 5 5 N 1.46896 * 109.47393 * 303.08453 * 4 3 2 6 6 C 1.46891 * 111.00265 * 177.36962 * 5 4 3 7 7 H 1.09006 * 109.47530 * 325.00517 * 6 5 4 8 8 C 1.52995 * 109.47279 * 85.00260 * 6 5 4 9 9 C 1.50705 * 109.47304 * 205.00522 * 6 5 4 10 10 C 1.38300 * 119.92630 * 319.72657 * 9 6 5 11 11 C 1.38106 * 120.06449 * 179.72824 * 10 9 6 12 12 C 1.38880 * 119.93166 * 0.54390 * 11 10 9 13 13 O 1.35746 * 120.06957 * 179.74832 * 12 11 10 14 14 C 1.34828 * 116.99853 * 185.52393 * 13 12 11 15 15 H 1.07995 * 120.00613 * 5.29300 * 14 13 12 16 16 C 1.38653 * 119.99632 * 185.29685 * 14 13 12 17 17 N 1.31554 * 120.00651 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99807 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47421 * 89.99658 * 18 16 14 20 20 H 1.48504 * 109.47266 * 209.99857 * 18 16 14 21 21 H 1.48507 * 109.47372 * 329.99766 * 18 16 14 22 22 C 1.38880 * 119.85960 * 359.73049 * 12 11 10 23 23 C 1.38092 * 119.93287 * 359.97438 * 22 12 11 24 24 C 1.53001 * 117.49839 * 132.96153 * 3 2 1 25 25 C 1.53002 * 60.00169 * 252.50884 * 24 3 2 26 26 H 1.09000 * 109.47562 * 294.98890 * 1 2 3 27 27 H 1.09000 * 109.46878 * 54.99228 * 1 2 3 28 28 H 1.09005 * 109.46873 * 174.98851 * 1 2 3 29 29 H 1.08998 * 109.47000 * 119.99879 * 2 1 3 30 30 H 1.09000 * 109.47237 * 239.99731 * 2 1 3 31 31 H 1.09004 * 109.47117 * 63.08942 * 4 3 2 32 32 H 1.09004 * 109.46901 * 183.08280 * 4 3 2 33 33 H 1.00906 * 110.99600 * 53.42202 * 5 4 3 34 34 H 1.08998 * 109.47569 * 179.97438 * 8 6 5 35 35 H 1.09006 * 109.47324 * 300.00179 * 8 6 5 36 36 H 1.09000 * 109.47009 * 59.99889 * 8 6 5 37 37 H 1.07995 * 119.97009 * 0.02562 * 10 9 6 38 38 H 1.07998 * 120.03337 * 180.27033 * 11 10 9 39 39 H 0.96999 * 120.00547 * 180.02562 * 17 16 14 40 40 H 1.08006 * 120.03201 * 179.97438 * 22 12 11 41 41 H 1.08008 * 119.97133 * 180.02562 * 23 22 12 42 42 H 1.08993 * 117.50096 * 359.97438 * 24 3 2 43 43 H 1.09001 * 117.49536 * 145.02331 * 24 3 2 44 44 H 1.08997 * 117.50247 * 252.51533 * 25 24 3 45 45 H 1.09000 * 117.49925 * 107.48633 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0638 2.1339 -1.3646 5 7 2.8792 1.3462 -2.2986 6 6 2.8740 1.9480 -3.6386 7 1 1.8977 2.3917 -3.8340 8 6 3.9512 3.0317 -3.7152 9 6 3.1574 0.8844 -4.6681 10 6 4.1104 -0.0851 -4.4141 11 6 4.3684 -1.0644 -5.3531 12 6 3.6778 -1.0683 -6.5580 13 8 3.9328 -2.0265 -7.4851 14 6 3.3122 -1.9066 -8.6760 15 1 2.7151 -1.0321 -8.8882 16 6 3.4405 -2.9061 -9.6283 17 7 4.1681 -3.9713 -9.3702 18 14 2.5812 -2.7397 -11.2786 19 1 3.4821 -2.0526 -12.2387 20 1 2.2408 -4.0887 -11.7978 21 1 1.3376 -1.9453 -11.1114 22 6 2.7254 -0.0899 -6.8123 23 6 2.4677 0.8830 -5.8668 24 6 3.1475 1.8002 0.9932 25 6 1.7214 2.3044 1.2233 26 1 -0.3634 0.4341 0.9314 27 1 -0.3633 0.5896 -0.8417 28 1 -0.3633 -1.0238 -0.0898 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.0469 2.2146 -1.7489 32 1 2.4924 3.1306 -1.2594 33 1 2.5665 0.3874 -2.3317 34 1 3.9477 3.4780 -4.7097 35 1 3.7463 3.8010 -2.9706 36 1 4.9275 2.5881 -3.5199 37 1 4.6500 -0.0793 -3.4786 38 1 5.1096 -1.8238 -5.1525 39 1 4.2581 -4.6704 -10.0365 40 1 2.1870 -0.0901 -7.7486 41 1 1.7269 1.6439 -6.0637 42 1 3.5125 1.0081 1.6468 43 1 3.8934 2.5283 0.6744 44 1 1.5291 3.3642 1.0559 45 1 1.1484 1.8438 2.0281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182005327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:27 Heat of formation + Delta-G solvation = -7.721100 kcal Electronic energy + Delta-G solvation = -22524.611063 eV Core-core repulsion = 19314.264864 eV Total energy + Delta-G solvation = -3210.346200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90231 -39.80263 -38.68675 -36.33778 -34.26564 -32.67139 -31.98524 -31.64127 -29.35871 -27.37584 -26.59711 -24.75661 -23.83752 -23.36490 -22.91694 -21.29909 -19.77459 -19.61917 -18.82379 -17.33968 -16.71851 -16.31375 -16.25577 -15.80158 -15.55806 -15.49944 -15.15866 -15.05870 -14.48771 -14.38885 -14.03143 -13.83291 -13.81342 -13.51015 -13.37748 -12.99824 -12.98025 -12.80284 -12.62983 -12.36797 -12.27665 -12.19747 -12.12439 -11.89069 -11.65610 -11.50559 -11.20598 -10.92415 -10.78159 -10.55797 -9.77394 -9.26688 -8.91117 -8.47559 -6.15638 0.60186 0.68603 1.34522 1.43838 1.51980 2.17364 2.78455 2.86650 3.16565 3.40324 3.51679 3.79307 3.86052 3.97130 4.07037 4.10544 4.18244 4.23714 4.42278 4.51924 4.57175 4.61489 4.67994 4.72745 4.75092 4.76220 4.84795 4.88081 4.97366 5.01846 5.11795 5.12973 5.14908 5.16768 5.28312 5.29697 5.34823 5.36317 5.44237 5.49784 5.58127 5.71610 5.73993 6.02540 6.20388 6.27071 6.50148 6.97252 7.78637 8.75857 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.002958 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.221713 B = 9462.958425 C = 9746.720380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.127 4.127 4 C 0.100 3.900 5 N -0.681 5.681 6 C 0.145 3.855 7 H 0.052 0.948 8 C -0.128 4.128 9 C -0.164 4.164 10 C -0.045 4.045 11 C -0.205 4.205 12 C 0.115 3.885 13 O -0.233 6.233 14 C -0.413 4.413 15 H 0.101 0.899 16 C -0.023 4.023 17 N -0.921 5.921 18 Si 1.018 2.982 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.253 1.253 22 C -0.242 4.242 23 C -0.064 4.064 24 C -0.166 4.166 25 C -0.164 4.164 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.341 0.659 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.144 0.856 38 H 0.111 0.889 39 H 0.273 0.727 40 H 0.118 0.882 41 H 0.138 0.862 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 14.175 18.088 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.128 4.128 4 C -0.029 4.029 5 N -0.314 5.314 6 C 0.036 3.964 7 H 0.070 0.930 8 C -0.186 4.186 9 C -0.165 4.165 10 C -0.063 4.063 11 C -0.225 4.225 12 C 0.064 3.936 13 O -0.139 6.139 14 C -0.489 4.489 15 H 0.118 0.882 16 C -0.220 4.220 17 N -0.559 5.559 18 Si 0.837 3.163 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.176 1.176 22 C -0.261 4.261 23 C -0.082 4.082 24 C -0.203 4.203 25 C -0.202 4.202 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.161 0.839 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.162 0.838 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.969 14.096 18.187 23.772 hybrid contribution -0.936 -0.735 -1.344 1.795 sum -6.904 13.361 16.843 22.580 Atomic orbital electron populations 1.21717 0.95249 1.01475 1.01929 1.21049 0.95974 0.93646 1.01980 1.21406 1.04477 0.96001 0.90881 1.21462 0.94644 0.96676 0.90111 1.60629 1.57334 1.06133 1.07312 1.20170 0.98116 0.92224 0.85880 0.93041 1.21733 0.98462 0.97222 1.01212 1.19748 1.00656 0.99503 0.96584 1.20749 0.95954 0.91955 0.97666 1.20477 1.04605 1.03590 0.93791 1.19947 0.94036 0.89352 0.90217 1.83951 1.63204 1.44122 1.22664 1.21797 1.30963 1.07128 0.89020 0.88212 1.26586 0.97788 0.93901 1.03765 1.70181 1.39422 1.09342 1.36990 0.84598 0.78458 0.78470 0.74753 1.18816 1.19565 1.17623 1.21215 1.03200 0.99306 1.02389 1.20933 0.98243 0.96573 0.92491 1.23017 0.91897 1.03460 1.01949 1.23037 0.98686 0.99764 0.98698 0.91938 0.93383 0.92792 0.91490 0.92381 0.95133 0.90626 0.83900 0.92686 0.91653 0.92835 0.83806 0.87084 0.91828 0.86455 0.84453 0.88911 0.88973 0.88320 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.74 71.98 0.70 -1.58 16 2 C -0.09 -1.50 5.83 30.59 0.18 -1.32 16 3 C -0.13 -2.06 1.78 -52.18 -0.09 -2.15 16 4 C 0.10 1.79 5.44 86.30 0.47 2.26 16 5 N -0.68 -14.69 5.71 -495.46 -2.83 -17.52 16 6 C 0.15 3.42 2.81 44.17 0.12 3.55 16 7 H 0.05 1.14 7.62 -2.38 -0.02 1.13 16 8 C -0.13 -2.78 9.39 71.98 0.68 -2.11 16 9 C -0.16 -5.08 4.71 -19.83 -0.09 -5.17 16 10 C -0.05 -1.54 9.00 22.25 0.20 -1.34 16 11 C -0.21 -8.87 9.99 22.39 0.22 -8.65 16 12 C 0.11 5.77 6.65 22.58 0.15 5.92 16 13 O -0.23 -14.18 9.76 -22.68 -0.22 -14.40 16 14 C -0.41 -24.26 9.44 67.92 0.64 -23.62 16 15 H 0.10 5.38 5.29 -2.91 -0.02 5.37 16 16 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 17 N -0.92 -57.01 13.67 21.61 0.30 -56.71 16 18 Si 1.02 43.06 29.55 68.60 2.03 45.09 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 22 C -0.24 -10.59 9.14 22.39 0.20 -10.38 16 23 C -0.06 -2.20 9.66 22.25 0.21 -1.98 16 24 C -0.17 -2.54 9.87 30.60 0.30 -2.24 16 25 C -0.16 -2.18 9.59 30.60 0.29 -1.89 16 26 H 0.06 0.84 7.77 -2.39 -0.02 0.82 16 27 H 0.05 0.80 7.90 -2.39 -0.02 0.78 16 28 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.07 1.06 7.93 -2.39 -0.02 1.04 16 30 H 0.06 1.13 6.26 -2.39 -0.01 1.11 16 31 H 0.03 0.56 7.75 -2.39 -0.02 0.54 16 32 H 0.08 1.28 7.46 -2.38 -0.02 1.27 16 33 H 0.34 7.98 6.04 -89.69 -0.54 7.44 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.19 7.50 -2.38 -0.02 1.17 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.14 4.23 7.72 -2.91 -0.02 4.21 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.12 5.24 5.71 -2.91 -0.02 5.23 16 41 H 0.14 3.82 8.03 -2.91 -0.02 3.79 16 42 H 0.09 1.37 8.07 -2.39 -0.02 1.35 16 43 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.10 1.18 7.94 -2.39 -0.02 1.16 16 Total: -1.00 -67.17 364.63 4.36 -62.81 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.43 Total: 32.27 kcal Atomic # 6 Polarization: -56.21 SS G_CDS: 4.66 Total: -51.55 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -2.53 Total: -74.23 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.22 Total: -14.40 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -67.17 4.36 -62.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182005327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.094 kcal (2) G-P(sol) polarization free energy of solvation -67.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds