Wall clock time and date at job start Tue Mar 31 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46728 * 2 1 4 4 C 1.53000 * 115.55553 * 65.05601 * 3 2 1 5 5 N 1.46899 * 109.46812 * 39.50132 * 4 3 2 6 6 C 1.46901 * 111.00341 * 175.06990 * 5 4 3 7 7 H 1.08999 * 109.47016 * 34.99243 * 6 5 4 8 8 C 1.53000 * 109.46852 * 274.99973 * 6 5 4 9 9 C 1.50700 * 109.47565 * 155.00096 * 6 5 4 10 10 C 1.38299 * 119.93082 * 39.72287 * 9 6 5 11 11 C 1.38093 * 120.06918 * 179.72722 * 10 9 6 12 12 C 1.38882 * 119.92769 * 0.55199 * 11 10 9 13 13 O 1.35757 * 120.06902 * 179.75092 * 12 11 10 14 14 C 1.34830 * 116.99877 * 185.69693 * 13 12 11 15 15 H 1.08001 * 120.00296 * 5.42212 * 14 13 12 16 16 C 1.38651 * 119.99731 * 185.42295 * 14 13 12 17 17 N 1.31559 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00085 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46939 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47308 * 119.99828 * 18 16 14 21 21 H 1.48496 * 109.47617 * 240.00071 * 18 16 14 22 22 C 1.38879 * 119.86640 * 359.72508 * 12 11 10 23 23 C 1.38106 * 119.92574 * 359.97438 * 22 12 11 24 24 C 1.53005 * 117.51637 * 210.75780 * 3 2 1 25 25 C 1.53007 * 60.00055 * 107.48042 * 24 3 2 26 26 H 1.08997 * 109.47460 * 294.99255 * 1 2 3 27 27 H 1.09002 * 109.47263 * 54.99984 * 1 2 3 28 28 H 1.09001 * 109.46998 * 174.99019 * 1 2 3 29 29 H 1.08994 * 109.47509 * 239.99410 * 2 1 3 30 30 H 1.09004 * 109.46788 * 119.99120 * 2 1 3 31 31 H 1.08995 * 109.47354 * 279.50178 * 4 3 2 32 32 H 1.08999 * 109.47545 * 159.50008 * 4 3 2 33 33 H 1.00898 * 111.00382 * 51.11410 * 5 4 3 34 34 H 1.09001 * 109.47274 * 59.99728 * 8 6 5 35 35 H 1.08995 * 109.47420 * 299.99587 * 8 6 5 36 36 H 1.09008 * 109.47056 * 179.97438 * 8 6 5 37 37 H 1.08001 * 119.96338 * 0.02562 * 10 9 6 38 38 H 1.08003 * 120.04137 * 180.27731 * 11 10 9 39 39 H 0.97006 * 119.99777 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.03991 * 179.97438 * 22 12 11 41 41 H 1.08003 * 119.96274 * 180.02562 * 23 22 12 42 42 H 1.09002 * 117.50124 * 214.96746 * 24 3 2 43 43 H 1.08998 * 117.49988 * 359.97438 * 24 3 2 44 44 H 1.08997 * 117.49940 * 252.51088 * 25 24 3 45 45 H 1.08996 * 117.49786 * 107.48597 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7110 2.2588 1.2516 5 7 1.8543 1.4096 2.4416 6 6 1.6602 2.1893 3.6714 7 1 0.9046 2.9559 3.5000 8 6 2.9802 2.8539 4.0675 9 6 1.2059 1.2748 4.7797 10 6 1.7586 0.0132 4.9035 11 6 1.3484 -0.8250 5.9215 12 6 0.3715 -0.4041 6.8144 13 8 -0.0374 -1.2277 7.8131 14 6 -1.0694 -0.8052 8.5710 15 1 -1.5878 0.1076 8.3170 16 6 -1.4652 -1.5426 9.6764 17 7 -0.8335 -2.6543 9.9861 18 14 -2.8945 -0.9569 10.7269 19 1 -3.4306 0.3113 10.1705 20 1 -3.9635 -1.9877 10.7274 21 1 -2.4261 -0.7290 12.1175 22 6 -0.1857 0.8612 6.6839 23 6 0.2332 1.6971 5.6676 24 6 3.3749 1.7204 -0.6940 25 6 2.0667 2.1823 -1.3391 26 1 -0.3634 0.4342 0.9314 27 1 -0.3634 0.5894 -0.8418 28 1 -0.3633 -1.0237 -0.0897 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 0.6864 2.6249 1.1877 32 1 2.3951 3.1043 1.3241 33 1 2.7487 0.9425 2.4470 34 1 3.3088 3.5154 3.2658 35 1 3.7359 2.0874 4.2388 36 1 2.8360 3.4329 4.9797 37 1 2.5153 -0.3150 4.2063 38 1 1.7836 -1.8085 6.0205 39 1 -1.1102 -3.1700 10.7597 40 1 -0.9459 1.1912 7.3765 41 1 -0.1995 2.6814 5.5658 42 1 4.0189 2.4847 -0.2589 43 1 3.8904 0.8753 -1.1503 44 1 1.7214 1.6412 -2.2200 45 1 1.8499 3.2505 -1.3282 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182005342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:30 Heat of formation + Delta-G solvation = 8.976217 kcal Electronic energy + Delta-G solvation = -22602.770333 eV Core-core repulsion = 19393.148184 eV Total energy + Delta-G solvation = -3209.622150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.33798 -38.76355 -37.16947 -35.14128 -32.25214 -31.85489 -30.60734 -30.05307 -27.86373 -25.57679 -25.29702 -23.84127 -22.62418 -22.37702 -21.72412 -20.00231 -18.88036 -17.86964 -16.93659 -16.20499 -15.45769 -15.03128 -14.69196 -14.46121 -14.19952 -14.08207 -13.69787 -13.53118 -13.45942 -12.96859 -12.86881 -12.67401 -12.56158 -12.33632 -12.12792 -11.98024 -11.65379 -11.63778 -11.40682 -11.16169 -11.09522 -10.78759 -10.70133 -10.53125 -10.44211 -10.34810 -10.17701 -9.78802 -9.29428 -8.78178 -8.28812 -8.07957 -7.08036 -6.40707 -3.99138 2.30554 2.40555 3.14726 3.16079 3.21620 3.54386 4.00336 4.15444 4.53011 4.62425 4.71249 4.84186 4.90960 5.09299 5.16858 5.30623 5.36241 5.37018 5.41203 5.44840 5.49724 5.55730 5.58432 5.66934 5.72106 5.81350 5.83039 5.90655 5.92263 6.02233 6.03623 6.11824 6.19248 6.30046 6.32517 6.44112 6.50337 6.78616 6.93245 7.09228 7.14510 7.36834 7.47159 7.50030 7.52557 7.91038 8.04922 9.05475 9.77436 10.77760 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.002985 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.935373 B = 9377.037404 C = 9644.901937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.117 4.117 4 C 0.098 3.902 5 N -0.672 5.672 6 C 0.141 3.859 7 H 0.074 0.926 8 C -0.175 4.175 9 C -0.164 4.164 10 C -0.052 4.052 11 C -0.195 4.195 12 C 0.153 3.847 13 O -0.181 6.181 14 C -0.389 4.389 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.233 4.233 23 C -0.069 4.069 24 C -0.181 4.181 25 C -0.174 4.174 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.339 0.661 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.268 0.732 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 9.896 -18.081 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.117 4.117 4 C -0.031 4.031 5 N -0.302 5.302 6 C 0.031 3.969 7 H 0.092 0.908 8 C -0.234 4.234 9 C -0.166 4.166 10 C -0.071 4.071 11 C -0.214 4.214 12 C 0.100 3.900 13 O -0.085 6.085 14 C -0.465 4.465 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.252 4.252 23 C -0.088 4.088 24 C -0.218 4.218 25 C -0.212 4.212 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.158 0.842 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.142 0.858 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.333 9.272 -17.844 20.804 hybrid contribution 0.123 0.919 0.559 1.083 sum 5.456 10.191 -17.284 20.793 Atomic orbital electron populations 1.21647 0.95373 1.01029 1.02101 1.20892 0.96248 0.92453 1.01587 1.21607 1.00041 0.97237 0.92862 1.21442 1.00643 0.92989 0.88039 1.60620 1.38681 1.30411 1.00513 1.20178 0.95668 0.93125 0.87889 0.90815 1.22489 0.98580 1.00915 1.01433 1.19057 1.02358 0.96167 0.98991 1.20294 0.98268 0.92877 0.95637 1.20202 1.02233 1.01149 0.97810 1.19401 0.92268 0.89328 0.89050 1.83993 1.46257 1.40628 1.37598 1.21347 1.07234 1.10124 1.07840 0.89151 1.25273 0.99020 0.95647 0.96660 1.70053 1.39654 1.13708 1.26569 0.85667 0.79732 0.78775 0.79374 1.19137 1.20181 1.20208 1.21108 1.06220 0.95323 1.02562 1.20539 0.95820 0.97996 0.94410 1.23112 0.90775 1.03292 1.04613 1.22963 1.01501 1.00367 0.96333 0.91486 0.93716 0.93255 0.93148 0.90427 0.90853 0.95525 0.84246 0.93544 0.92379 0.91934 0.87395 0.86790 0.92162 0.85752 0.87904 0.89197 0.88949 0.88868 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.72 37.16 0.36 -1.16 16 2 C -0.07 -0.74 5.46 -26.73 -0.15 -0.88 16 3 C -0.12 -1.07 1.82 -154.50 -0.28 -1.35 16 4 C 0.10 0.98 5.07 -3.82 -0.02 0.96 16 5 N -0.67 -7.77 4.72 -107.95 -0.51 -8.28 16 6 C 0.14 1.81 2.79 -68.86 -0.19 1.62 16 7 H 0.07 0.94 7.71 -51.93 -0.40 0.54 16 8 C -0.18 -2.00 9.14 37.16 0.34 -1.66 16 9 C -0.16 -2.75 4.96 -104.58 -0.52 -3.27 16 10 C -0.05 -0.93 9.32 -39.61 -0.37 -1.29 16 11 C -0.19 -4.16 9.99 -39.40 -0.39 -4.55 16 12 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 13 O -0.18 -5.24 9.76 0.03 0.00 -5.24 16 14 C -0.39 -11.02 9.44 30.88 0.29 -10.73 16 15 H 0.09 2.38 5.29 -52.49 -0.28 2.10 16 16 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 17 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 18 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 C -0.23 -5.12 9.13 -39.39 -0.36 -5.48 16 23 C -0.07 -1.27 9.66 -39.61 -0.38 -1.65 16 24 C -0.18 -1.47 9.87 -26.72 -0.26 -1.73 16 25 C -0.17 -1.40 9.97 -26.72 -0.27 -1.67 16 26 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.08 0.85 7.36 -51.93 -0.38 0.47 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.26 7.14 -51.93 -0.37 -0.11 16 33 H 0.34 3.75 7.57 -39.29 -0.30 3.45 16 34 H 0.05 0.46 7.39 -51.93 -0.38 0.08 16 35 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.11 1.63 7.23 -52.49 -0.38 1.25 16 38 H 0.11 2.37 8.06 -52.48 -0.42 1.95 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.12 2.76 5.71 -52.49 -0.30 2.46 16 41 H 0.10 1.62 8.03 -52.48 -0.42 1.20 16 42 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -29.82 366.46 -9.21 -39.03 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.40 Total: 6.53 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: -2.56 Total: -28.40 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.25 Total: -33.18 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.82 -9.21 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182005342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.002 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds