Wall clock time and date at job start Tue Mar 31 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46728 * 2 1 4 4 C 1.53000 * 115.55553 * 65.05601 * 3 2 1 5 5 N 1.46899 * 109.46812 * 39.50132 * 4 3 2 6 6 C 1.46901 * 111.00341 * 175.06990 * 5 4 3 7 7 H 1.08999 * 109.47016 * 34.99243 * 6 5 4 8 8 C 1.53000 * 109.46852 * 274.99973 * 6 5 4 9 9 C 1.50700 * 109.47565 * 155.00096 * 6 5 4 10 10 C 1.38299 * 119.93082 * 39.72287 * 9 6 5 11 11 C 1.38093 * 120.06918 * 179.72722 * 10 9 6 12 12 C 1.38882 * 119.92769 * 0.55199 * 11 10 9 13 13 O 1.35757 * 120.06902 * 179.75092 * 12 11 10 14 14 C 1.34830 * 116.99877 * 185.69693 * 13 12 11 15 15 H 1.08001 * 120.00296 * 5.42212 * 14 13 12 16 16 C 1.38651 * 119.99731 * 185.42295 * 14 13 12 17 17 N 1.31559 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00085 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46939 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47308 * 119.99828 * 18 16 14 21 21 H 1.48496 * 109.47617 * 240.00071 * 18 16 14 22 22 C 1.38879 * 119.86640 * 359.72508 * 12 11 10 23 23 C 1.38106 * 119.92574 * 359.97438 * 22 12 11 24 24 C 1.53005 * 117.51637 * 210.75780 * 3 2 1 25 25 C 1.53007 * 60.00055 * 107.48042 * 24 3 2 26 26 H 1.08997 * 109.47460 * 294.99255 * 1 2 3 27 27 H 1.09002 * 109.47263 * 54.99984 * 1 2 3 28 28 H 1.09001 * 109.46998 * 174.99019 * 1 2 3 29 29 H 1.08994 * 109.47509 * 239.99410 * 2 1 3 30 30 H 1.09004 * 109.46788 * 119.99120 * 2 1 3 31 31 H 1.08995 * 109.47354 * 279.50178 * 4 3 2 32 32 H 1.08999 * 109.47545 * 159.50008 * 4 3 2 33 33 H 1.00898 * 111.00382 * 51.11410 * 5 4 3 34 34 H 1.09001 * 109.47274 * 59.99728 * 8 6 5 35 35 H 1.08995 * 109.47420 * 299.99587 * 8 6 5 36 36 H 1.09008 * 109.47056 * 179.97438 * 8 6 5 37 37 H 1.08001 * 119.96338 * 0.02562 * 10 9 6 38 38 H 1.08003 * 120.04137 * 180.27731 * 11 10 9 39 39 H 0.97006 * 119.99777 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.03991 * 179.97438 * 22 12 11 41 41 H 1.08003 * 119.96274 * 180.02562 * 23 22 12 42 42 H 1.09002 * 117.50124 * 214.96746 * 24 3 2 43 43 H 1.08998 * 117.49988 * 359.97438 * 24 3 2 44 44 H 1.08997 * 117.49940 * 252.51088 * 25 24 3 45 45 H 1.08996 * 117.49786 * 107.48597 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7110 2.2588 1.2516 5 7 1.8543 1.4096 2.4416 6 6 1.6602 2.1893 3.6714 7 1 0.9046 2.9559 3.5000 8 6 2.9802 2.8539 4.0675 9 6 1.2059 1.2748 4.7797 10 6 1.7586 0.0132 4.9035 11 6 1.3484 -0.8250 5.9215 12 6 0.3715 -0.4041 6.8144 13 8 -0.0374 -1.2277 7.8131 14 6 -1.0694 -0.8052 8.5710 15 1 -1.5878 0.1076 8.3170 16 6 -1.4652 -1.5426 9.6764 17 7 -0.8335 -2.6543 9.9861 18 14 -2.8945 -0.9569 10.7269 19 1 -3.4306 0.3113 10.1705 20 1 -3.9635 -1.9877 10.7274 21 1 -2.4261 -0.7290 12.1175 22 6 -0.1857 0.8612 6.6839 23 6 0.2332 1.6971 5.6676 24 6 3.3749 1.7204 -0.6940 25 6 2.0667 2.1823 -1.3391 26 1 -0.3634 0.4342 0.9314 27 1 -0.3634 0.5894 -0.8418 28 1 -0.3633 -1.0237 -0.0897 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 0.6864 2.6249 1.1877 32 1 2.3951 3.1043 1.3241 33 1 2.7487 0.9425 2.4470 34 1 3.3088 3.5154 3.2658 35 1 3.7359 2.0874 4.2388 36 1 2.8360 3.4329 4.9797 37 1 2.5153 -0.3150 4.2063 38 1 1.7836 -1.8085 6.0205 39 1 -1.1102 -3.1700 10.7597 40 1 -0.9459 1.1912 7.3765 41 1 -0.1995 2.6814 5.5658 42 1 4.0189 2.4847 -0.2589 43 1 3.8904 0.8753 -1.1503 44 1 1.7214 1.6412 -2.2200 45 1 1.8499 3.2505 -1.3282 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182005342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:30 Heat of formation + Delta-G solvation = -7.111130 kcal Electronic energy + Delta-G solvation = -22603.467933 eV Core-core repulsion = 19393.148184 eV Total energy + Delta-G solvation = -3210.319749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83170 -39.78984 -38.63273 -36.42188 -34.24457 -32.64919 -31.89528 -31.54468 -29.26093 -27.33595 -26.39286 -24.62446 -23.95434 -23.36826 -23.02403 -21.42817 -19.74043 -19.64265 -18.77819 -17.17051 -16.56923 -16.30148 -16.20744 -15.69733 -15.52545 -15.35626 -15.28087 -14.81847 -14.48811 -14.39835 -14.03650 -13.95494 -13.70596 -13.50547 -13.44004 -13.02848 -12.94413 -12.82888 -12.54902 -12.37420 -12.25960 -12.12998 -12.05382 -11.87717 -11.73742 -11.48086 -11.15241 -10.93235 -10.76271 -10.47392 -9.70895 -9.20599 -8.81154 -8.45605 -6.13111 0.66560 0.77793 1.35038 1.43642 1.53442 2.18779 2.82267 2.89951 3.17638 3.36838 3.56520 3.85249 3.98979 4.06852 4.09961 4.14775 4.17896 4.24259 4.40953 4.43099 4.61666 4.65710 4.68207 4.74660 4.76244 4.79581 4.84391 4.93028 4.96317 5.07057 5.10176 5.15265 5.19062 5.24110 5.29656 5.32436 5.34261 5.36868 5.51202 5.59585 5.65259 5.76780 5.84654 6.05900 6.24951 6.32917 6.59189 6.99634 7.82703 8.78358 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.002985 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.935373 B = 9377.037404 C = 9644.901937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.103 3.897 5 N -0.680 5.680 6 C 0.145 3.855 7 H 0.084 0.916 8 C -0.170 4.170 9 C -0.138 4.138 10 C -0.044 4.044 11 C -0.206 4.206 12 C 0.109 3.891 13 O -0.236 6.236 14 C -0.410 4.410 15 H 0.099 0.901 16 C -0.025 4.025 17 N -0.923 5.923 18 Si 1.018 2.982 19 H -0.252 1.252 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.242 4.242 23 C -0.070 4.070 24 C -0.174 4.174 25 C -0.169 4.169 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.344 0.656 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.141 0.859 38 H 0.108 0.892 39 H 0.272 0.728 40 H 0.115 0.885 41 H 0.137 0.863 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 12.626 -20.497 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.127 4.127 4 C -0.025 4.025 5 N -0.311 5.311 6 C 0.036 3.964 7 H 0.102 0.898 8 C -0.229 4.229 9 C -0.139 4.139 10 C -0.063 4.063 11 C -0.226 4.226 12 C 0.060 3.940 13 O -0.143 6.143 14 C -0.486 4.486 15 H 0.116 0.884 16 C -0.222 4.222 17 N -0.561 5.561 18 Si 0.838 3.162 19 H -0.175 1.175 20 H -0.194 1.194 21 H -0.193 1.193 22 C -0.261 4.261 23 C -0.088 4.088 24 C -0.211 4.211 25 C -0.206 4.206 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.163 0.837 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.133 0.867 41 H 0.155 0.845 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.865 12.037 -20.318 24.333 hybrid contribution 0.135 0.205 0.972 1.002 sum 6.000 12.242 -19.346 23.667 Atomic orbital electron populations 1.21603 0.96060 1.00784 1.01367 1.20845 0.95564 0.93206 1.01360 1.21507 1.01362 0.96685 0.93188 1.21400 1.00558 0.93100 0.87472 1.60504 1.39237 1.30824 1.00523 1.20129 0.96892 0.92333 0.87079 0.89802 1.22415 0.97296 1.01074 1.02072 1.19634 0.99676 0.95923 0.98644 1.20641 0.98315 0.92676 0.94627 1.20457 1.01899 1.01802 0.98416 1.19931 0.94219 0.90505 0.89389 1.83948 1.47735 1.42888 1.39756 1.21818 1.07865 1.10614 1.08331 0.88361 1.26580 1.02178 0.95612 0.97817 1.70197 1.42375 1.15694 1.27879 0.84534 0.75665 0.78810 0.77221 1.17524 1.19353 1.19285 1.21201 1.06191 0.95091 1.03648 1.20912 0.95859 0.98830 0.93223 1.23159 0.90518 1.03492 1.03954 1.23027 1.01269 1.00695 0.95648 0.93398 0.92863 0.93603 0.92360 0.91679 0.91544 0.94333 0.83665 0.91297 0.92449 0.92358 0.84143 0.87337 0.91910 0.86735 0.84540 0.88548 0.88587 0.88492 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.72 71.98 0.70 -2.05 16 2 C -0.07 -1.27 5.46 30.59 0.17 -1.11 16 3 C -0.13 -1.93 1.82 -52.18 -0.10 -2.03 16 4 C 0.10 1.71 5.07 86.30 0.44 2.15 16 5 N -0.68 -13.42 4.72 -495.46 -2.34 -15.76 16 6 C 0.15 3.19 2.79 44.17 0.12 3.32 16 7 H 0.08 1.77 7.71 -2.39 -0.02 1.75 16 8 C -0.17 -3.17 9.14 71.98 0.66 -2.52 16 9 C -0.14 -4.25 4.96 -19.84 -0.10 -4.35 16 10 C -0.04 -1.51 9.32 22.25 0.21 -1.30 16 11 C -0.21 -9.04 9.99 22.39 0.22 -8.82 16 12 C 0.11 5.60 6.65 22.58 0.15 5.75 16 13 O -0.24 -14.62 9.76 -22.82 -0.22 -14.84 16 14 C -0.41 -24.48 9.44 67.92 0.64 -23.84 16 15 H 0.10 5.42 5.29 -2.91 -0.02 5.41 16 16 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 17 N -0.92 -57.76 13.67 21.61 0.30 -57.46 16 18 Si 1.02 43.75 29.55 68.60 2.03 45.78 16 19 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 C -0.24 -10.83 9.13 22.39 0.20 -10.63 16 23 C -0.07 -2.44 9.66 22.25 0.21 -2.23 16 24 C -0.17 -2.22 9.87 30.60 0.30 -1.92 16 25 C -0.17 -2.17 9.97 30.60 0.31 -1.86 16 26 H 0.05 1.11 7.87 -2.39 -0.02 1.09 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.93 8.09 -2.39 -0.02 0.91 16 30 H 0.06 1.30 7.36 -2.38 -0.02 1.29 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 0.57 7.14 -2.39 -0.02 0.55 16 33 H 0.34 6.34 7.57 -89.70 -0.68 5.66 16 34 H 0.07 1.03 7.39 -2.39 -0.02 1.01 16 35 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 36 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.14 3.85 7.23 -2.91 -0.02 3.83 16 38 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 39 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 40 H 0.11 5.25 5.71 -2.91 -0.02 5.24 16 41 H 0.14 3.85 8.03 -2.91 -0.02 3.83 16 42 H 0.10 1.13 8.08 -2.39 -0.02 1.11 16 43 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -69.52 366.46 4.66 -64.86 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.29 Total: 29.82 kcal Atomic # 6 Polarization: -57.01 SS G_CDS: 4.61 Total: -52.40 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -2.04 Total: -73.22 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.22 Total: -14.84 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.52 4.66 -64.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182005342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.753 kcal (2) G-P(sol) polarization free energy of solvation -69.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds