Wall clock time and date at job start Tue Mar 31 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47406 * 2 1 4 4 C 1.38235 * 119.99977 * 89.99783 * 3 2 1 5 5 C 1.38231 * 120.00164 * 179.97438 * 4 3 2 6 6 C 1.38231 * 119.99891 * 0.03207 * 5 4 3 7 7 C 1.50697 * 120.00077 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47491 * 89.99118 * 7 6 5 9 9 C 1.50702 * 109.47159 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72352 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 H 1.09007 * 109.47463 * 325.00619 * 12 11 9 14 14 C 1.50697 * 109.47763 * 205.00186 * 12 11 9 15 15 H 1.08011 * 119.99571 * 0.02562 * 14 12 11 16 16 C 1.37871 * 120.00501 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99867 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00050 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47082 * 90.00754 * 18 16 14 20 20 H 1.48501 * 109.47111 * 210.00281 * 18 16 14 21 21 H 1.48494 * 109.47432 * 330.00650 * 18 16 14 22 22 C 1.53000 * 109.47070 * 85.00207 * 12 11 9 23 23 C 1.53003 * 109.47155 * 295.00511 * 22 12 11 24 24 C 1.38237 * 119.99938 * 0.24219 * 6 5 4 25 25 C 1.38230 * 119.99976 * 270.02409 * 3 2 1 26 26 H 1.08994 * 109.47336 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47097 * 300.00149 * 1 2 3 28 28 H 1.09003 * 109.46697 * 59.99857 * 1 2 3 29 29 H 1.09004 * 109.46944 * 240.00127 * 2 1 3 30 30 H 1.08994 * 109.47279 * 120.00108 * 2 1 3 31 31 H 1.07999 * 119.99857 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.99945 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46801 * 329.99157 * 7 6 5 34 34 H 1.09000 * 109.47461 * 209.99689 * 7 6 5 35 35 H 1.09004 * 109.47066 * 60.00201 * 8 7 6 36 36 H 1.08994 * 109.47405 * 300.00031 * 8 7 6 37 37 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 38 38 H 0.96999 * 119.99893 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47265 * 54.99835 * 22 12 11 40 40 H 1.08999 * 109.47282 * 175.00398 * 22 12 11 41 41 H 1.08994 * 109.47555 * 59.99581 * 23 22 12 42 42 H 1.09005 * 109.47275 * 180.02562 * 23 22 12 43 43 H 1.09004 * 109.46996 * 299.99254 * 23 22 12 44 44 H 1.08004 * 119.99634 * 179.73362 * 24 6 5 45 45 H 1.08004 * 120.00364 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7242 3.3755 1.1972 6 6 2.9545 4.0272 0.0001 7 6 3.4569 5.4479 0.0001 8 6 4.9869 5.4480 0.0002 9 6 5.4892 6.8688 -0.0004 10 8 4.7011 7.7907 -0.0005 11 7 6.8143 7.1151 0.0052 12 6 7.3026 8.4963 0.0107 13 1 6.6322 9.1211 -0.5796 14 6 8.6863 8.5423 -0.5845 15 1 9.1550 7.6336 -0.9325 16 6 9.3536 9.7445 -0.6858 17 7 8.7827 10.8511 -0.2625 18 14 11.0690 9.8014 -1.4229 19 1 10.9709 10.0164 -2.8891 20 1 11.8347 10.9161 -0.8094 21 1 11.7652 8.5171 -1.1564 22 6 7.3488 9.0152 1.4492 23 6 5.9276 9.0860 2.0117 24 6 2.7187 3.3774 -1.1971 25 6 2.2624 2.0726 -1.1971 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0832 1.5632 2.1324 32 1 2.9038 3.8848 2.1326 33 1 3.0935 5.9618 0.8901 34 1 3.0936 5.9618 -0.8899 35 1 5.3503 4.9341 -0.8898 36 1 5.3502 4.9342 0.8902 37 1 7.4446 6.3778 0.0055 38 1 9.2523 11.6969 -0.3334 39 1 7.9479 8.3399 2.0601 40 1 7.7948 10.0096 1.4626 41 1 5.4815 8.0916 1.9983 42 1 5.9604 9.4561 3.0365 43 1 5.3284 9.7613 1.4010 44 1 2.8946 3.8881 -2.1324 45 1 2.0816 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183894713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:54 Heat of formation + Delta-G solvation = -48.481620 kcal Electronic energy + Delta-G solvation = -22232.619030 eV Core-core repulsion = 19020.505322 eV Total energy + Delta-G solvation = -3212.113708 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74108 -38.88937 -35.47028 -34.79977 -32.52364 -32.24415 -30.99388 -30.86543 -28.82013 -26.95179 -24.90239 -23.11438 -22.80052 -22.41436 -20.58901 -19.97017 -19.24567 -17.12336 -16.28970 -15.92912 -15.64201 -15.26504 -14.97212 -14.90825 -14.28016 -13.94993 -13.90035 -13.52041 -13.26383 -13.17630 -12.93689 -12.67090 -12.28443 -12.00749 -11.79282 -11.54929 -11.50195 -11.39027 -11.23786 -11.03334 -10.95260 -10.86144 -10.83100 -10.69047 -10.30376 -10.13768 -9.60579 -9.04419 -8.98767 -8.96427 -8.52508 -8.46164 -7.77167 -6.11084 -4.20359 1.25548 1.33792 3.24784 3.31564 3.33313 3.48397 3.64529 4.16676 4.40075 4.56322 4.63591 4.92197 4.93500 4.97088 5.09037 5.20070 5.26885 5.28450 5.30593 5.41477 5.47343 5.59650 5.63805 5.71361 5.87828 5.91281 5.92568 6.00752 6.11871 6.33087 6.37241 6.41078 6.48040 6.51184 6.66238 6.68504 6.95420 7.06182 7.22254 7.39807 7.50676 7.64118 7.76331 7.92857 8.20536 8.72376 8.80391 9.20155 9.47469 10.94211 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.002657 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.369476 B =10535.765840 C =11004.567517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.079 4.079 7 C -0.064 4.064 8 C -0.136 4.136 9 C 0.499 3.501 10 O -0.551 6.551 11 N -0.711 5.711 12 C 0.269 3.731 13 H 0.048 0.952 14 C -0.533 4.533 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.114 4.114 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.388 0.612 38 H 0.264 0.736 39 H 0.030 0.970 40 H 0.098 0.902 41 H 0.038 0.962 42 H 0.021 0.979 43 H 0.049 0.951 44 H 0.122 0.878 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.162 -19.188 1.486 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.079 4.079 7 C -0.102 4.102 8 C -0.176 4.176 9 C 0.284 3.716 10 O -0.431 6.431 11 N -0.358 5.358 12 C 0.168 3.832 13 H 0.066 0.934 14 C -0.572 4.572 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.728 3.272 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.166 4.166 23 C -0.194 4.194 24 C -0.132 4.132 25 C -0.135 4.135 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.220 0.780 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.116 0.884 41 H 0.057 0.943 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.140 0.860 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.669 -18.290 1.504 22.300 hybrid contribution 1.338 -0.276 -0.359 1.413 sum -11.331 -18.566 1.145 21.780 Atomic orbital electron populations 1.21750 0.94861 1.01525 1.02261 1.20522 0.96084 0.92868 1.02652 1.19852 0.99967 0.96187 0.93309 1.20984 1.00230 0.94936 0.97364 1.21086 0.99569 0.94735 0.97823 1.20026 0.98387 0.96375 0.93076 1.20327 0.93942 0.91478 1.04447 1.21660 0.96236 0.95893 1.03821 1.20397 0.83454 0.90525 0.77216 1.90663 1.55502 1.46187 1.50717 1.46512 1.05586 1.11327 1.72401 1.18760 0.94245 0.76861 0.93375 0.93402 1.21247 1.00464 0.94130 1.41346 0.92152 1.24892 0.98246 0.95419 0.95192 1.69898 1.37753 0.98529 1.45801 0.86465 0.83729 0.77741 0.79254 1.20590 1.21089 1.19884 1.21928 0.94125 1.03652 0.96909 1.21834 0.99039 1.00516 0.97981 1.21096 0.99537 0.94717 0.97844 1.20989 1.00235 0.94908 0.97371 0.92548 0.92568 0.92571 0.91201 0.91208 0.86389 0.86017 0.90285 0.90244 0.89578 0.89642 0.78036 0.92598 0.95124 0.88367 0.94258 0.95952 0.93186 0.85984 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.90 37.16 0.37 -0.60 16 2 C -0.08 -0.61 6.06 -27.88 -0.17 -0.78 16 3 C -0.09 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 5 C -0.11 -1.26 9.70 -39.59 -0.38 -1.64 16 6 C -0.08 -0.93 5.13 -104.63 -0.54 -1.47 16 7 C -0.06 -0.86 4.63 -27.89 -0.13 -0.99 16 8 C -0.14 -1.90 5.68 -27.88 -0.16 -2.06 16 9 C 0.50 9.59 6.40 -10.98 -0.07 9.52 16 10 O -0.55 -12.54 13.12 5.55 0.07 -12.47 16 11 N -0.71 -14.58 5.02 -54.93 -0.28 -14.86 16 12 C 0.27 6.78 2.24 -69.08 -0.15 6.62 16 13 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 14 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 17 N -0.88 -24.79 11.29 55.43 0.63 -24.17 16 18 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 22 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 23 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 24 C -0.11 -1.26 9.70 -39.58 -0.38 -1.65 16 25 C -0.12 -1.17 9.70 -39.59 -0.38 -1.55 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 33 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 34 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.39 6.94 8.54 -40.82 -0.35 6.59 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 41 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 44 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 45 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -29.96 365.36 -9.86 -39.81 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.62 Total: 6.87 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -3.15 Total: -16.32 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.35 Total: -39.02 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.96 -9.86 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183894713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.667 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds