Wall clock time and date at job start Tue Mar 31 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47406 * 2 1 4 4 C 1.38235 * 119.99977 * 89.99783 * 3 2 1 5 5 C 1.38231 * 120.00164 * 179.97438 * 4 3 2 6 6 C 1.38231 * 119.99891 * 0.03207 * 5 4 3 7 7 C 1.50697 * 120.00077 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47491 * 89.99118 * 7 6 5 9 9 C 1.50702 * 109.47159 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72352 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 H 1.09007 * 109.47463 * 325.00619 * 12 11 9 14 14 C 1.50697 * 109.47763 * 205.00186 * 12 11 9 15 15 H 1.08011 * 119.99571 * 0.02562 * 14 12 11 16 16 C 1.37871 * 120.00501 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99867 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00050 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47082 * 90.00754 * 18 16 14 20 20 H 1.48501 * 109.47111 * 210.00281 * 18 16 14 21 21 H 1.48494 * 109.47432 * 330.00650 * 18 16 14 22 22 C 1.53000 * 109.47070 * 85.00207 * 12 11 9 23 23 C 1.53003 * 109.47155 * 295.00511 * 22 12 11 24 24 C 1.38237 * 119.99938 * 0.24219 * 6 5 4 25 25 C 1.38230 * 119.99976 * 270.02409 * 3 2 1 26 26 H 1.08994 * 109.47336 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47097 * 300.00149 * 1 2 3 28 28 H 1.09003 * 109.46697 * 59.99857 * 1 2 3 29 29 H 1.09004 * 109.46944 * 240.00127 * 2 1 3 30 30 H 1.08994 * 109.47279 * 120.00108 * 2 1 3 31 31 H 1.07999 * 119.99857 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.99945 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46801 * 329.99157 * 7 6 5 34 34 H 1.09000 * 109.47461 * 209.99689 * 7 6 5 35 35 H 1.09004 * 109.47066 * 60.00201 * 8 7 6 36 36 H 1.08994 * 109.47405 * 300.00031 * 8 7 6 37 37 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 38 38 H 0.96999 * 119.99893 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47265 * 54.99835 * 22 12 11 40 40 H 1.08999 * 109.47282 * 175.00398 * 22 12 11 41 41 H 1.08994 * 109.47555 * 59.99581 * 23 22 12 42 42 H 1.09005 * 109.47275 * 180.02562 * 23 22 12 43 43 H 1.09004 * 109.46996 * 299.99254 * 23 22 12 44 44 H 1.08004 * 119.99634 * 179.73362 * 24 6 5 45 45 H 1.08004 * 120.00364 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7242 3.3755 1.1972 6 6 2.9545 4.0272 0.0001 7 6 3.4569 5.4479 0.0001 8 6 4.9869 5.4480 0.0002 9 6 5.4892 6.8688 -0.0004 10 8 4.7011 7.7907 -0.0005 11 7 6.8143 7.1151 0.0052 12 6 7.3026 8.4963 0.0107 13 1 6.6322 9.1211 -0.5796 14 6 8.6863 8.5423 -0.5845 15 1 9.1550 7.6336 -0.9325 16 6 9.3536 9.7445 -0.6858 17 7 8.7827 10.8511 -0.2625 18 14 11.0690 9.8014 -1.4229 19 1 10.9709 10.0164 -2.8891 20 1 11.8347 10.9161 -0.8094 21 1 11.7652 8.5171 -1.1564 22 6 7.3488 9.0152 1.4492 23 6 5.9276 9.0860 2.0117 24 6 2.7187 3.3774 -1.1971 25 6 2.2624 2.0726 -1.1971 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0832 1.5632 2.1324 32 1 2.9038 3.8848 2.1326 33 1 3.0935 5.9618 0.8901 34 1 3.0936 5.9618 -0.8899 35 1 5.3503 4.9341 -0.8898 36 1 5.3502 4.9342 0.8902 37 1 7.4446 6.3778 0.0055 38 1 9.2523 11.6969 -0.3334 39 1 7.9479 8.3399 2.0601 40 1 7.7948 10.0096 1.4626 41 1 5.4815 8.0916 1.9983 42 1 5.9604 9.4561 3.0365 43 1 5.3284 9.7613 1.4010 44 1 2.8946 3.8881 -2.1324 45 1 2.0816 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183894713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:54 Heat of formation + Delta-G solvation = -63.821642 kcal Electronic energy + Delta-G solvation = -22233.284223 eV Core-core repulsion = 19020.505322 eV Total energy + Delta-G solvation = -3212.778902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84764 -40.21076 -37.05780 -35.91242 -34.27360 -33.46690 -32.58417 -31.76816 -29.86826 -28.74810 -26.00078 -24.82344 -23.57821 -23.41858 -21.90261 -21.22473 -20.96473 -18.86609 -17.60014 -17.16705 -16.89189 -16.73136 -16.21906 -16.06960 -15.84429 -15.00525 -14.71883 -14.61941 -14.47302 -14.35949 -14.07466 -13.98474 -13.60867 -13.29823 -13.20786 -13.15965 -12.89349 -12.69237 -12.64048 -12.33832 -12.25638 -12.15487 -12.03232 -11.83074 -11.61666 -11.58932 -11.55646 -11.04412 -10.63361 -10.47843 -9.77416 -9.57903 -9.35615 -8.15639 -6.32941 0.44880 0.55121 1.44576 1.44631 1.55436 1.93282 2.37144 2.68732 2.92076 3.13597 3.81353 3.92232 3.98825 4.13461 4.16987 4.21198 4.40533 4.42285 4.50011 4.55190 4.58394 4.64998 4.68882 4.69817 4.75562 4.81103 4.98695 5.07993 5.09994 5.11801 5.14770 5.26101 5.28589 5.29201 5.41656 5.45401 5.57293 5.58094 5.66501 5.77739 5.79997 5.81420 5.95663 6.17551 6.18915 6.76065 7.05463 7.34815 7.65769 8.89606 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.002657 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.369476 B =10535.765840 C =11004.567517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.123 4.123 6 C -0.092 4.092 7 C -0.056 4.056 8 C -0.120 4.120 9 C 0.495 3.505 10 O -0.590 6.590 11 N -0.709 5.709 12 C 0.277 3.723 13 H -0.004 1.004 14 C -0.548 4.548 15 H 0.071 0.929 16 C 0.014 3.986 17 N -0.915 5.915 18 Si 0.970 3.030 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.261 1.261 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.123 4.123 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.403 0.597 38 H 0.264 0.736 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.024 0.976 44 H 0.126 0.874 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.747 -22.075 1.666 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.140 4.140 5 C -0.141 4.141 6 C -0.092 4.092 7 C -0.094 4.094 8 C -0.160 4.160 9 C 0.283 3.717 10 O -0.472 6.472 11 N -0.358 5.358 12 C 0.173 3.827 13 H 0.014 0.986 14 C -0.586 4.586 15 H 0.089 0.911 16 C -0.186 4.186 17 N -0.554 5.554 18 Si 0.795 3.205 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.185 1.185 22 C -0.160 4.160 23 C -0.180 4.180 24 C -0.142 4.142 25 C -0.141 4.141 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.238 0.762 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.144 0.856 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.255 -21.223 1.685 24.565 hybrid contribution 1.122 0.590 -0.424 1.337 sum -11.133 -20.633 1.262 23.479 Atomic orbital electron populations 1.21739 0.94398 1.02343 1.01791 1.20577 0.96380 0.91453 1.03619 1.20193 0.98899 0.97284 0.93013 1.21245 0.99743 0.94604 0.98450 1.21235 0.99735 0.95363 0.97749 1.19873 0.99988 0.95441 0.93929 1.20181 0.93453 0.92629 1.03140 1.21610 0.96534 0.91983 1.05840 1.21303 0.82465 0.92417 0.75540 1.90651 1.56302 1.48120 1.52113 1.46309 1.06674 1.09968 1.72837 1.18339 0.92855 0.78623 0.92870 0.98623 1.21599 1.00951 0.94659 1.41360 0.91107 1.25784 1.02246 0.95055 0.95550 1.70054 1.39387 0.99078 1.46853 0.85380 0.78879 0.78146 0.78132 1.20458 1.20990 1.18457 1.21778 0.95151 1.02192 0.96873 1.21670 0.97327 1.00392 0.98573 1.21236 0.99830 0.95385 0.97768 1.21239 0.99820 0.94562 0.98472 0.91123 0.93020 0.93079 0.90295 0.90233 0.84553 0.85428 0.91504 0.91755 0.87564 0.87271 0.76241 0.92650 0.94100 0.91174 0.93541 0.93672 0.95708 0.85621 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.90 71.98 0.71 -0.87 16 2 C -0.08 -0.98 6.06 29.85 0.18 -0.80 16 3 C -0.09 -1.59 5.13 -19.87 -0.10 -1.69 16 4 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 5 C -0.12 -2.52 9.70 22.27 0.22 -2.31 16 6 C -0.09 -2.09 5.13 -19.87 -0.10 -2.20 16 7 C -0.06 -1.49 4.63 29.85 0.14 -1.35 16 8 C -0.12 -3.20 5.68 29.85 0.17 -3.03 16 9 C 0.50 19.03 6.40 87.66 0.56 19.59 16 10 O -0.59 -27.65 13.12 -3.04 -0.04 -27.69 16 11 N -0.71 -28.98 5.02 -446.09 -2.24 -31.22 16 12 C 0.28 14.26 2.24 44.24 0.10 14.36 16 13 H 0.00 -0.25 7.58 -2.38 -0.02 -0.27 16 14 C -0.55 -29.08 8.73 25.60 0.22 -28.85 16 15 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 16 C 0.01 0.74 5.29 84.65 0.45 1.18 16 17 N -0.92 -52.75 11.29 21.45 0.24 -52.51 16 18 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 22 C -0.12 -6.01 5.45 30.60 0.17 -5.84 16 23 C -0.12 -5.55 8.51 71.98 0.61 -4.94 16 24 C -0.12 -2.60 9.70 22.27 0.22 -2.38 16 25 C -0.12 -2.22 9.70 22.27 0.22 -2.00 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.81 8.09 -2.38 -0.02 0.79 16 30 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 31 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.07 1.91 8.04 -2.38 -0.02 1.89 16 34 H 0.06 1.87 8.04 -2.39 -0.02 1.85 16 35 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.40 13.91 8.54 -92.71 -0.79 13.12 16 38 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 3.91 5.95 -2.39 -0.01 3.89 16 41 H 0.05 2.01 5.64 -2.39 -0.01 2.00 16 42 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.02 1.21 7.85 -2.38 -0.02 1.19 16 44 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 45 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -66.09 365.36 4.13 -61.96 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.16 Total: 28.29 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 3.97 Total: -23.10 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -2.00 Total: -83.73 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.04 Total: -27.69 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -66.09 4.13 -61.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183894713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.860 kcal (2) G-P(sol) polarization free energy of solvation -66.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds