Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46863 * 2 1 4 4 C 1.38237 * 119.99647 * 90.00018 * 3 2 1 5 5 C 1.38238 * 119.99946 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99590 * 0.02740 * 5 4 3 7 7 C 1.50701 * 119.99576 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47212 * 90.00031 * 7 6 5 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 O 1.21288 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00115 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46680 * 34.99949 * 12 11 9 14 14 C 1.50696 * 109.46926 * 155.00146 * 12 11 9 15 15 H 1.08004 * 120.00141 * 359.97438 * 14 12 11 16 16 C 1.37880 * 119.99994 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99901 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00054 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47301 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46912 * 120.00071 * 18 16 14 21 21 H 1.48500 * 109.47187 * 239.99930 * 18 16 14 22 22 C 1.52995 * 109.46662 * 274.99892 * 12 11 9 23 23 C 1.53002 * 109.47266 * 65.00213 * 22 12 11 24 24 C 1.38233 * 120.00269 * 0.24973 * 6 5 4 25 25 C 1.38228 * 120.00130 * 270.02646 * 3 2 1 26 26 H 1.08992 * 109.47514 * 59.99554 * 1 2 3 27 27 H 1.08996 * 109.46778 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99368 * 1 2 3 29 29 H 1.09001 * 109.47109 * 240.00631 * 2 1 3 30 30 H 1.08992 * 109.47514 * 120.00446 * 2 1 3 31 31 H 1.07998 * 120.00143 * 0.02562 * 4 3 2 32 32 H 1.07991 * 120.00062 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.47060 * 210.00086 * 7 6 5 34 34 H 1.09001 * 109.47380 * 330.00174 * 7 6 5 35 35 H 1.09002 * 109.47153 * 299.99998 * 8 7 6 36 36 H 1.08998 * 109.47533 * 59.99628 * 8 7 6 37 37 H 0.97003 * 119.99640 * 0.02562 * 11 9 8 38 38 H 0.96997 * 119.99977 * 180.02562 * 17 16 14 39 39 H 1.09010 * 109.46920 * 184.99998 * 22 12 11 40 40 H 1.09004 * 109.47273 * 304.99748 * 22 12 11 41 41 H 1.09003 * 109.46963 * 59.99953 * 23 22 12 42 42 H 1.08997 * 109.46930 * 179.97438 * 23 22 12 43 43 H 1.08998 * 109.47130 * 299.99327 * 23 22 12 44 44 H 1.08003 * 119.99927 * 179.72604 * 24 6 5 45 45 H 1.08001 * 120.00620 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7239 3.3756 1.1973 6 6 2.9542 4.0273 0.0001 7 6 3.4565 5.4482 0.0002 8 6 4.9864 5.4483 0.0001 9 6 5.4888 6.8690 -0.0004 10 8 4.7006 7.7909 -0.0003 11 7 6.8138 7.1154 -0.0011 12 6 7.3021 8.4967 -0.0010 13 1 6.6298 9.1196 0.5889 14 6 8.6839 8.5409 0.5987 15 1 9.1515 7.6312 0.9455 16 6 9.3513 9.7428 0.7046 17 7 8.7817 10.8506 0.2827 18 14 11.0638 9.7978 1.4486 19 1 11.4765 8.4269 1.8430 20 1 12.0213 10.3337 0.4480 21 1 11.0555 10.6764 2.6458 22 6 7.3528 9.0196 -1.4380 23 6 5.9335 9.0920 -2.0047 24 6 2.7184 3.3776 -1.1971 25 6 2.2621 2.0727 -1.1971 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0830 1.5632 2.1325 32 1 2.9042 3.8845 2.1325 33 1 3.0931 5.9620 -0.8898 34 1 3.0932 5.9620 0.8902 35 1 5.3498 4.9344 0.8901 36 1 5.3499 4.9345 -0.8898 37 1 7.4442 6.3781 -0.0016 38 1 9.2514 11.6961 0.3568 39 1 7.7989 10.0142 -1.4471 40 1 7.9540 8.3461 -2.0488 41 1 5.3323 9.7656 -1.3939 42 1 5.9696 9.4650 -3.0283 43 1 5.4874 8.0975 -1.9956 44 1 2.8941 3.8883 -2.1324 45 1 2.0814 1.5640 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183894732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = -48.509766 kcal Electronic energy + Delta-G solvation = -22232.128005 eV Core-core repulsion = 19020.013076 eV Total energy + Delta-G solvation = -3212.114929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.74024 -38.88876 -35.47073 -34.79985 -32.52356 -32.24453 -30.99352 -30.86561 -28.81974 -26.95335 -24.90253 -23.11574 -22.80067 -22.41485 -20.58895 -19.97039 -19.24590 -17.12414 -16.29030 -15.92904 -15.64263 -15.26777 -14.97424 -14.90649 -14.27714 -13.95023 -13.89950 -13.52035 -13.26494 -13.17612 -12.93649 -12.67562 -12.28494 -12.00807 -11.79188 -11.55045 -11.50141 -11.39266 -11.24303 -11.03330 -10.95316 -10.85901 -10.82934 -10.68999 -10.29552 -10.14052 -9.60932 -9.03522 -8.98731 -8.96173 -8.52731 -8.46610 -7.77173 -6.11363 -4.20518 1.25563 1.33773 3.23717 3.31681 3.34270 3.48380 3.64528 4.16715 4.39929 4.56301 4.63614 4.92219 4.93509 4.97083 5.09055 5.19868 5.26894 5.28456 5.30599 5.41477 5.47349 5.59650 5.63809 5.71380 5.87847 5.91299 5.92560 6.00764 6.11874 6.33095 6.37231 6.41078 6.47976 6.51191 6.66244 6.68453 6.95424 7.06128 7.22243 7.39777 7.50644 7.64228 7.76252 7.92813 8.20403 8.72361 8.80460 9.20143 9.47353 10.93963 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031881 B = 0.002658 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.062118 B =10532.620377 C =11005.098353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.079 4.079 7 C -0.064 4.064 8 C -0.136 4.136 9 C 0.499 3.501 10 O -0.551 6.551 11 N -0.711 5.711 12 C 0.269 3.731 13 H 0.048 0.952 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.882 5.882 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.114 4.114 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.388 0.612 38 H 0.263 0.737 39 H 0.098 0.902 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.021 0.979 43 H 0.038 0.962 44 H 0.122 0.878 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 -19.198 -1.522 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.079 4.079 7 C -0.102 4.102 8 C -0.176 4.176 9 C 0.284 3.716 10 O -0.431 6.431 11 N -0.358 5.358 12 C 0.167 3.833 13 H 0.066 0.934 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.520 5.520 18 Si 0.728 3.272 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.166 4.166 23 C -0.194 4.194 24 C -0.132 4.132 25 C -0.135 4.135 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.220 0.780 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.140 0.860 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.668 -18.304 -1.532 22.313 hybrid contribution 1.339 -0.266 0.347 1.408 sum -11.330 -18.570 -1.185 21.786 Atomic orbital electron populations 1.21749 0.94861 1.01525 1.02261 1.20522 0.96085 0.92867 1.02652 1.19852 0.99966 0.96187 0.93309 1.20990 1.00212 0.94934 0.97370 1.21095 0.99516 0.94732 0.97846 1.20028 0.98386 0.96376 0.93075 1.20328 0.93942 0.91477 1.04446 1.21659 0.96237 0.95892 1.03821 1.20398 0.83456 0.90526 0.77217 1.90664 1.55502 1.46189 1.50720 1.46515 1.05585 1.11325 1.72399 1.18765 0.94273 0.76851 0.93379 0.93394 1.21286 1.00557 0.94115 1.41154 0.92093 1.24898 0.98244 0.95417 0.95217 1.69908 1.37642 0.98482 1.45949 0.86413 0.83791 0.78130 0.78875 1.19769 1.20898 1.20900 1.21930 0.94144 1.03662 0.96891 1.21833 0.99041 1.00509 0.97984 1.21089 0.99586 0.94718 0.97820 1.20985 1.00259 0.94908 0.97364 0.92574 0.92550 0.92564 0.91207 0.91201 0.86377 0.85984 0.90284 0.90245 0.89566 0.89655 0.78036 0.92653 0.88363 0.95125 0.93183 0.95953 0.94259 0.86017 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.08 -0.61 6.06 -27.88 -0.17 -0.78 16 3 C -0.09 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 5 C -0.11 -1.26 9.70 -39.58 -0.38 -1.65 16 6 C -0.08 -0.93 5.13 -104.62 -0.54 -1.47 16 7 C -0.06 -0.86 4.63 -27.88 -0.13 -0.99 16 8 C -0.14 -1.90 5.68 -27.89 -0.16 -2.06 16 9 C 0.50 9.59 6.40 -10.99 -0.07 9.52 16 10 O -0.55 -12.54 13.12 5.55 0.07 -12.47 16 11 N -0.71 -14.58 5.02 -54.93 -0.28 -14.85 16 12 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 13 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 14 C -0.53 -14.07 8.73 -34.44 -0.30 -14.38 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 16 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 17 N -0.88 -24.79 11.29 55.43 0.63 -24.16 16 18 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 23 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 24 C -0.11 -1.26 9.70 -39.58 -0.38 -1.64 16 25 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 34 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.39 6.94 8.54 -40.82 -0.35 6.59 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.10 2.66 5.95 -51.92 -0.31 2.35 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 44 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -29.98 365.35 -9.86 -39.84 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.62 Total: 6.84 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -3.15 Total: -16.32 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.35 Total: -39.02 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.98 -9.86 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183894732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.674 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds