Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46863 * 2 1 4 4 C 1.38237 * 119.99647 * 90.00018 * 3 2 1 5 5 C 1.38238 * 119.99946 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99590 * 0.02740 * 5 4 3 7 7 C 1.50701 * 119.99576 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47212 * 90.00031 * 7 6 5 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 O 1.21288 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00115 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46680 * 34.99949 * 12 11 9 14 14 C 1.50696 * 109.46926 * 155.00146 * 12 11 9 15 15 H 1.08004 * 120.00141 * 359.97438 * 14 12 11 16 16 C 1.37880 * 119.99994 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99901 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00054 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47301 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46912 * 120.00071 * 18 16 14 21 21 H 1.48500 * 109.47187 * 239.99930 * 18 16 14 22 22 C 1.52995 * 109.46662 * 274.99892 * 12 11 9 23 23 C 1.53002 * 109.47266 * 65.00213 * 22 12 11 24 24 C 1.38233 * 120.00269 * 0.24973 * 6 5 4 25 25 C 1.38228 * 120.00130 * 270.02646 * 3 2 1 26 26 H 1.08992 * 109.47514 * 59.99554 * 1 2 3 27 27 H 1.08996 * 109.46778 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99368 * 1 2 3 29 29 H 1.09001 * 109.47109 * 240.00631 * 2 1 3 30 30 H 1.08992 * 109.47514 * 120.00446 * 2 1 3 31 31 H 1.07998 * 120.00143 * 0.02562 * 4 3 2 32 32 H 1.07991 * 120.00062 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.47060 * 210.00086 * 7 6 5 34 34 H 1.09001 * 109.47380 * 330.00174 * 7 6 5 35 35 H 1.09002 * 109.47153 * 299.99998 * 8 7 6 36 36 H 1.08998 * 109.47533 * 59.99628 * 8 7 6 37 37 H 0.97003 * 119.99640 * 0.02562 * 11 9 8 38 38 H 0.96997 * 119.99977 * 180.02562 * 17 16 14 39 39 H 1.09010 * 109.46920 * 184.99998 * 22 12 11 40 40 H 1.09004 * 109.47273 * 304.99748 * 22 12 11 41 41 H 1.09003 * 109.46963 * 59.99953 * 23 22 12 42 42 H 1.08997 * 109.46930 * 179.97438 * 23 22 12 43 43 H 1.08998 * 109.47130 * 299.99327 * 23 22 12 44 44 H 1.08003 * 119.99927 * 179.72604 * 24 6 5 45 45 H 1.08001 * 120.00620 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7239 3.3756 1.1973 6 6 2.9542 4.0273 0.0001 7 6 3.4565 5.4482 0.0002 8 6 4.9864 5.4483 0.0001 9 6 5.4888 6.8690 -0.0004 10 8 4.7006 7.7909 -0.0003 11 7 6.8138 7.1154 -0.0011 12 6 7.3021 8.4967 -0.0010 13 1 6.6298 9.1196 0.5889 14 6 8.6839 8.5409 0.5987 15 1 9.1515 7.6312 0.9455 16 6 9.3513 9.7428 0.7046 17 7 8.7817 10.8506 0.2827 18 14 11.0638 9.7978 1.4486 19 1 11.4765 8.4269 1.8430 20 1 12.0213 10.3337 0.4480 21 1 11.0555 10.6764 2.6458 22 6 7.3528 9.0196 -1.4380 23 6 5.9335 9.0920 -2.0047 24 6 2.7184 3.3776 -1.1971 25 6 2.2621 2.0727 -1.1971 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0830 1.5632 2.1325 32 1 2.9042 3.8845 2.1325 33 1 3.0931 5.9620 -0.8898 34 1 3.0932 5.9620 0.8902 35 1 5.3498 4.9344 0.8901 36 1 5.3499 4.9345 -0.8898 37 1 7.4442 6.3781 -0.0016 38 1 9.2514 11.6961 0.3568 39 1 7.7989 10.0142 -1.4471 40 1 7.9540 8.3461 -2.0488 41 1 5.3323 9.7656 -1.3939 42 1 5.9696 9.4650 -3.0283 43 1 5.4874 8.0975 -1.9956 44 1 2.8941 3.8883 -2.1324 45 1 2.0814 1.5640 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183894732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = -63.865987 kcal Electronic energy + Delta-G solvation = -22232.793901 eV Core-core repulsion = 19020.013076 eV Total energy + Delta-G solvation = -3212.780825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84683 -40.20997 -37.05849 -35.91214 -34.27374 -33.46728 -32.58393 -31.76779 -29.86813 -28.74985 -26.00113 -24.82501 -23.57835 -23.41856 -21.90294 -21.22489 -20.96446 -18.86792 -17.60122 -17.16917 -16.89239 -16.73145 -16.21935 -16.06605 -15.84377 -15.00617 -14.71877 -14.62435 -14.47403 -14.36061 -14.07435 -13.98369 -13.61033 -13.29666 -13.21144 -13.16333 -12.88999 -12.70218 -12.63947 -12.33754 -12.25682 -12.14134 -12.03304 -11.83104 -11.61711 -11.59123 -11.56058 -11.03009 -10.63764 -10.48334 -9.77381 -9.57894 -9.35611 -8.15912 -6.33081 0.44897 0.55104 1.43396 1.44642 1.56365 1.93262 2.37062 2.68657 2.92057 3.13403 3.81344 3.92265 3.98827 4.13476 4.16997 4.21215 4.40548 4.42291 4.49975 4.55212 4.58343 4.64996 4.68889 4.69813 4.75556 4.81060 4.98709 5.07971 5.10021 5.11801 5.14787 5.26107 5.28589 5.29198 5.41676 5.45372 5.57322 5.58107 5.66570 5.77746 5.80002 5.81363 5.95581 6.17550 6.18857 6.76208 7.05413 7.34713 7.65749 8.89537 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031881 B = 0.002658 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.062118 B =10532.620377 C =11005.098353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.124 4.124 6 C -0.092 4.092 7 C -0.056 4.056 8 C -0.120 4.120 9 C 0.495 3.505 10 O -0.590 6.590 11 N -0.709 5.709 12 C 0.277 3.723 13 H -0.004 1.004 14 C -0.546 4.546 15 H 0.071 0.929 16 C 0.013 3.987 17 N -0.915 5.915 18 Si 0.970 3.030 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.284 1.284 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.123 4.123 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.403 0.597 38 H 0.264 0.736 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.024 0.976 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.128 0.872 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.753 -22.077 -1.697 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.141 4.141 5 C -0.142 4.142 6 C -0.092 4.092 7 C -0.094 4.094 8 C -0.160 4.160 9 C 0.283 3.717 10 O -0.472 6.472 11 N -0.358 5.358 12 C 0.173 3.827 13 H 0.014 0.986 14 C -0.585 4.585 15 H 0.089 0.911 16 C -0.187 4.187 17 N -0.554 5.554 18 Si 0.795 3.205 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.211 1.211 22 C -0.160 4.160 23 C -0.180 4.180 24 C -0.141 4.141 25 C -0.140 4.140 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.238 0.762 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.146 0.854 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.262 -21.229 -1.709 24.575 hybrid contribution 1.126 0.598 0.408 1.339 sum -11.136 -20.631 -1.300 23.481 Atomic orbital electron populations 1.21738 0.94398 1.02343 1.01792 1.20576 0.96380 0.91452 1.03619 1.20193 0.98899 0.97285 0.93012 1.21240 0.99795 0.94591 0.98471 1.21234 0.99814 0.95398 0.97769 1.19875 0.99986 0.95441 0.93928 1.20182 0.93452 0.92628 1.03140 1.21609 0.96536 0.91985 1.05840 1.21302 0.82466 0.92416 0.75541 1.90653 1.56301 1.48121 1.52115 1.46311 1.06674 1.09967 1.72835 1.18343 0.92873 0.78620 0.92873 0.98602 1.21628 1.01037 0.94615 1.41178 0.91109 1.25789 1.02224 0.95055 0.95593 1.70060 1.39299 0.99054 1.46982 0.85327 0.78886 0.78510 0.77782 1.18452 1.20469 1.21053 1.21781 0.95168 1.02199 0.96863 1.21669 0.97330 1.00393 0.98568 1.21238 0.99749 0.95349 0.97747 1.21245 0.99772 0.94574 0.98450 0.93025 0.91125 0.93073 0.90231 0.90297 0.84650 0.85622 0.91497 0.91759 0.87559 0.87281 0.76242 0.92655 0.91173 0.94101 0.95701 0.93676 0.93543 0.85426 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 71.98 0.71 -0.88 16 2 C -0.08 -0.98 6.06 29.85 0.18 -0.80 16 3 C -0.09 -1.59 5.13 -19.87 -0.10 -1.69 16 4 C -0.12 -2.22 9.70 22.27 0.22 -2.01 16 5 C -0.12 -2.60 9.70 22.27 0.22 -2.38 16 6 C -0.09 -2.09 5.13 -19.86 -0.10 -2.20 16 7 C -0.06 -1.49 4.63 29.85 0.14 -1.35 16 8 C -0.12 -3.20 5.68 29.85 0.17 -3.03 16 9 C 0.50 19.02 6.40 87.66 0.56 19.58 16 10 O -0.59 -27.64 13.12 -3.05 -0.04 -27.68 16 11 N -0.71 -28.98 5.02 -446.10 -2.24 -31.22 16 12 C 0.28 14.25 2.24 44.24 0.10 14.35 16 13 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 14 C -0.55 -29.01 8.73 25.60 0.22 -28.79 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 16 C 0.01 0.72 5.29 84.66 0.45 1.17 16 17 N -0.92 -52.74 11.29 21.45 0.24 -52.50 16 18 Si 0.97 42.26 29.54 68.60 2.03 44.29 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 23 C -0.12 -5.55 8.51 71.98 0.61 -4.94 16 24 C -0.12 -2.52 9.70 22.27 0.22 -2.31 16 25 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 30 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 32 H 0.13 2.44 8.06 -2.92 -0.02 2.41 16 33 H 0.07 1.91 8.04 -2.39 -0.02 1.89 16 34 H 0.06 1.87 8.04 -2.39 -0.02 1.85 16 35 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.40 13.91 8.54 -92.71 -0.79 13.12 16 38 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 39 H 0.07 3.91 5.95 -2.38 -0.01 3.90 16 40 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.05 2.01 5.64 -2.39 -0.01 2.00 16 44 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 45 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -66.11 365.35 4.13 -61.98 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.16 Total: 28.21 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 3.97 Total: -23.08 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.00 Total: -83.72 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -66.11 4.13 -61.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183894732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.883 kcal (2) G-P(sol) polarization free energy of solvation -66.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds