Wall clock time and date at job start Tue Mar 31 2020 06:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47140 * 2 1 4 4 C 1.52999 * 109.46791 * 339.21691 * 3 2 1 5 5 C 1.53001 * 109.46923 * 219.21825 * 3 2 1 6 6 N 1.46500 * 109.46999 * 99.22050 * 3 2 1 7 7 C 1.46499 * 119.99407 * 242.43195 * 6 3 2 8 8 C 1.50699 * 109.47281 * 269.99649 * 7 6 3 9 9 H 1.07996 * 120.00026 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00200 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99988 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00123 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47268 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47031 * 120.00583 * 12 10 8 15 15 H 1.48502 * 109.47098 * 240.00446 * 12 10 8 16 16 C 1.34766 * 120.00370 * 62.43365 * 6 3 2 17 17 O 1.21557 * 120.00231 * 211.48956 * 16 6 3 18 18 C 1.47850 * 119.99991 * 31.48719 * 16 6 3 19 19 C 1.39600 * 120.14442 * 317.61962 * 18 16 6 20 20 C 1.37936 * 119.84987 * 180.29644 * 19 18 16 21 21 C 1.38389 * 120.14723 * 359.44632 * 20 19 18 22 22 C 1.38339 * 120.28703 * 0.29997 * 21 20 19 23 23 C 1.50698 * 119.92119 * 179.97438 * 22 21 20 24 24 C 1.37975 * 120.14913 * 359.97438 * 22 21 20 25 25 H 1.08995 * 109.47366 * 59.99849 * 1 2 3 26 26 H 1.09003 * 109.47422 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46767 * 299.99849 * 1 2 3 28 28 H 1.09003 * 109.47209 * 239.99936 * 2 1 3 29 29 H 1.08995 * 109.47366 * 120.00151 * 2 1 3 30 30 H 1.09010 * 109.46874 * 180.02562 * 4 3 2 31 31 H 1.08992 * 109.47466 * 299.99683 * 4 3 2 32 32 H 1.09002 * 109.47205 * 60.00408 * 4 3 2 33 33 H 1.09002 * 109.47287 * 253.84942 * 5 3 2 34 34 H 1.08997 * 109.47183 * 13.85535 * 5 3 2 35 35 H 1.09001 * 109.46701 * 133.84793 * 5 3 2 36 36 H 1.08998 * 109.47531 * 30.00344 * 7 6 3 37 37 H 1.09001 * 109.47158 * 150.00235 * 7 6 3 38 38 H 0.97001 * 120.00369 * 179.97438 * 11 10 8 39 39 H 1.07991 * 120.07400 * 0.04264 * 19 18 16 40 40 H 1.08001 * 119.92648 * 179.73239 * 20 19 18 41 41 H 1.07996 * 119.85423 * 180.27559 * 21 20 19 42 42 H 1.08998 * 109.47171 * 90.00680 * 23 22 21 43 43 H 1.08997 * 109.47207 * 210.00297 * 23 22 21 44 44 H 1.08997 * 109.47764 * 330.00129 * 23 22 21 45 45 H 1.08002 * 120.07348 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 0.9384 2.3728 -0.5119 5 6 3.2636 1.5508 -0.9121 6 7 2.4114 1.8291 1.3634 7 6 1.7054 2.9249 2.0320 8 6 2.4076 4.2262 1.7416 9 1 3.2912 4.2362 1.1207 10 6 1.9215 5.4043 2.2676 11 7 0.8452 5.3924 3.0233 12 14 2.7915 7.0175 1.9071 13 1 3.9684 6.7618 1.0382 14 1 1.8565 7.9402 1.2145 15 1 3.2412 7.6330 3.1815 16 6 3.4025 1.1769 2.0025 17 8 3.3657 1.0489 3.2107 18 6 4.5347 0.6169 1.2340 19 6 4.3034 -0.0456 0.0272 20 6 5.3636 -0.5711 -0.6818 21 6 6.6553 -0.4326 -0.2049 22 6 6.8918 0.2274 0.9876 23 6 8.3017 0.3728 1.4995 24 6 5.8398 0.7527 1.7094 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3019 3.4005 -0.5123 31 1 0.6622 2.0852 -1.5262 32 1 0.0667 2.2957 0.1379 33 1 4.1629 1.6472 -0.3037 34 1 3.3369 0.6556 -1.5296 35 1 3.1628 2.4268 -1.5528 36 1 0.6806 2.9750 1.6640 37 1 1.6969 2.7489 3.1076 38 1 0.5033 6.2211 3.3937 39 1 3.2963 -0.1501 -0.3484 40 1 5.1856 -1.0876 -1.6134 41 1 7.4823 -0.8420 -0.7661 42 1 8.7351 1.2954 1.1133 43 1 8.2913 0.4046 2.5889 44 1 8.8986 -0.4762 1.1665 45 1 6.0258 1.2674 2.6405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187519296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:05 Heat of formation + Delta-G solvation = 45.572483 kcal Electronic energy + Delta-G solvation = -24643.871781 eV Core-core repulsion = 21435.836565 eV Total energy + Delta-G solvation = -3208.035216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.54312 -39.49782 -38.77227 -35.59607 -34.23113 -33.81413 -32.07328 -30.89146 -29.87874 -28.75092 -26.76134 -25.59556 -24.88211 -23.57587 -22.46747 -22.02031 -19.07750 -18.64981 -18.09470 -17.40013 -17.14808 -16.51912 -16.33095 -15.92749 -15.49890 -15.42336 -15.14231 -14.73105 -14.51668 -14.40944 -14.23932 -13.74720 -13.43284 -13.36807 -13.14993 -13.02322 -12.96144 -12.67418 -12.55157 -12.40841 -12.33082 -12.31126 -12.20076 -11.93463 -11.72712 -11.67560 -11.53217 -11.08822 -10.78586 -10.64586 -9.84881 -9.32359 -9.00665 -8.22689 -6.38129 0.08260 0.50961 1.33277 1.35111 1.46914 1.68245 2.25049 2.39707 2.84723 3.05324 3.58472 3.71490 3.79649 3.98594 4.01709 4.06890 4.23537 4.32883 4.44029 4.48240 4.55591 4.67517 4.72212 4.77027 4.81864 4.84073 4.87663 4.96134 4.97497 5.03189 5.03879 5.14297 5.18872 5.22856 5.28841 5.35510 5.42999 5.45998 5.52534 5.56568 5.62366 5.67585 5.91900 6.07693 6.07747 6.69027 6.78418 7.18234 7.35806 8.83530 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.006639 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.134001 B = 4216.295919 C = 5372.059778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.157 3.843 4 C -0.143 4.143 5 C -0.193 4.193 6 N -0.605 5.605 7 C 0.262 3.738 8 C -0.535 4.535 9 H 0.052 0.948 10 C 0.011 3.989 11 N -0.927 5.927 12 Si 0.963 3.037 13 H -0.267 1.267 14 H -0.268 1.268 15 H -0.283 1.283 16 C 0.558 3.442 17 O -0.595 6.595 18 C -0.171 4.171 19 C -0.087 4.087 20 C -0.148 4.148 21 C -0.085 4.085 22 C -0.119 4.119 23 C -0.109 4.109 24 C -0.091 4.091 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.120 0.880 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.036 0.964 37 H -0.015 1.015 38 H 0.267 0.733 39 H 0.182 0.818 40 H 0.169 0.831 41 H 0.160 0.840 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.091 0.909 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.319 -13.198 -14.951 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.073 3.927 4 C -0.200 4.200 5 C -0.249 4.249 6 N -0.337 5.337 7 C 0.141 3.859 8 C -0.573 4.573 9 H 0.070 0.930 10 C -0.189 4.189 11 N -0.566 5.566 12 Si 0.788 3.212 13 H -0.191 1.191 14 H -0.193 1.193 15 H -0.209 1.209 16 C 0.349 3.651 17 O -0.477 6.477 18 C -0.174 4.174 19 C -0.104 4.104 20 C -0.166 4.166 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.165 4.165 24 C -0.110 4.110 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.138 0.862 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.003 0.997 38 H 0.076 0.924 39 H 0.198 0.802 40 H 0.187 0.813 41 H 0.177 0.823 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.110 0.890 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.137 -13.126 -14.230 20.999 hybrid contribution -0.039 1.569 1.169 1.957 sum 8.098 -11.556 -13.061 19.228 Atomic orbital electron populations 1.21903 0.94391 1.02294 1.01945 1.22420 0.98001 0.94329 1.02949 1.20835 0.95930 0.95222 0.80665 1.22206 0.97212 0.98922 1.01610 1.23795 0.97889 1.03560 0.99649 1.48080 1.35259 1.34266 1.16045 1.18818 0.92717 0.83387 0.90938 1.21681 1.12002 0.92455 1.31209 0.92980 1.25813 0.95715 1.02760 0.94567 1.70068 1.23708 1.28684 1.34180 0.85429 0.78772 0.78994 0.78027 1.19123 1.19306 1.20854 1.18902 0.82773 0.76888 0.86494 1.90639 1.79638 1.59397 1.18013 1.19995 0.93127 1.05690 0.98604 1.22951 1.04376 0.91967 0.91063 1.21441 0.91626 1.01607 1.01905 1.21580 0.98284 0.96202 0.94231 1.20041 0.95723 0.99772 0.96322 1.20788 0.91206 1.03525 1.00991 1.21038 0.91911 0.98972 0.99053 0.90016 0.91082 0.95453 0.86245 0.93521 0.93395 0.88203 0.93004 0.90354 0.86822 0.92332 0.94662 0.99663 0.92432 0.80191 0.81336 0.82290 0.90696 0.92455 0.88986 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.58 71.98 0.62 -3.01 16 2 C -0.14 -3.62 4.25 30.59 0.13 -3.49 16 3 C 0.16 5.20 0.97 3.60 0.00 5.20 16 4 C -0.14 -4.70 5.67 71.98 0.41 -4.29 16 5 C -0.19 -5.32 7.33 71.98 0.53 -4.79 16 6 N -0.60 -27.70 2.39 -782.45 -1.87 -29.57 16 7 C 0.26 14.69 4.73 85.63 0.40 15.09 16 8 C -0.53 -31.10 8.52 25.60 0.22 -30.88 16 9 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 10 C 0.01 0.61 5.46 84.66 0.46 1.07 16 11 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 12 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 16 C 0.56 26.74 5.91 86.79 0.51 27.25 16 17 O -0.60 -34.19 16.77 -3.90 -0.07 -34.25 16 18 C -0.17 -6.38 4.22 -20.09 -0.08 -6.46 16 19 C -0.09 -2.30 4.77 22.53 0.11 -2.19 16 20 C -0.15 -2.84 9.77 22.23 0.22 -2.62 16 21 C -0.09 -1.67 9.69 22.33 0.22 -1.45 16 22 C -0.12 -3.06 5.87 -19.90 -0.12 -3.17 16 23 C -0.11 -2.12 10.01 71.24 0.71 -1.41 16 24 C -0.09 -3.22 9.32 22.53 0.21 -3.01 16 25 H 0.08 1.66 6.45 -2.39 -0.02 1.65 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.03 0.84 7.46 -2.38 -0.02 0.82 16 28 H 0.12 1.99 6.40 -2.39 -0.02 1.97 16 29 H 0.05 1.45 6.66 -2.39 -0.02 1.43 16 30 H 0.05 1.89 7.09 -2.38 -0.02 1.87 16 31 H 0.10 2.34 7.46 -2.39 -0.02 2.32 16 32 H 0.05 1.87 5.09 -2.39 -0.01 1.86 16 33 H 0.08 2.59 3.91 -14.66 -0.06 2.53 16 34 H 0.11 2.06 5.24 -2.39 -0.01 2.05 16 35 H 0.06 1.61 7.65 -2.39 -0.02 1.59 16 36 H 0.04 1.98 5.78 -2.39 -0.01 1.97 16 37 H -0.01 -0.98 7.35 -2.39 -0.02 -0.99 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.18 4.18 1.17 -3.91 0.00 4.17 16 40 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 44 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 45 H 0.10 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -78.74 338.82 5.87 -72.87 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.94 Total: 18.15 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 4.55 Total: -18.15 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -1.58 Total: -85.89 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.07 Total: -34.25 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -78.74 5.87 -72.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187519296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.445 kcal (2) G-P(sol) polarization free energy of solvation -78.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds