Wall clock time and date at job start Tue Mar 31 2020 06:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46875 * 2 1 4 4 C 1.53001 * 109.47224 * 329.70558 * 3 2 1 5 5 C 1.53001 * 109.46846 * 209.70599 * 3 2 1 6 6 N 1.46499 * 109.47362 * 89.71033 * 3 2 1 7 7 C 1.46503 * 119.99962 * 230.63405 * 6 3 2 8 8 C 1.50702 * 109.46530 * 265.95671 * 7 6 3 9 9 H 1.07994 * 119.99991 * 359.97438 * 8 7 6 10 10 C 1.37888 * 119.99794 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99490 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00010 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.47043 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47433 * 119.99771 * 12 10 8 15 15 H 1.48502 * 109.47058 * 239.99892 * 12 10 8 16 16 C 1.34775 * 120.00193 * 50.62269 * 6 3 2 17 17 O 1.21549 * 119.99968 * 216.15111 * 16 6 3 18 18 C 1.47849 * 120.00073 * 36.15132 * 16 6 3 19 19 C 1.39568 * 120.14599 * 143.64344 * 18 16 6 20 20 C 1.37958 * 119.85324 * 179.72837 * 19 18 16 21 21 C 1.38359 * 120.14575 * 0.26978 * 20 19 18 22 22 C 1.50701 * 119.85635 * 179.97438 * 21 20 19 23 23 C 1.38362 * 120.28978 * 0.02562 * 21 20 19 24 24 C 1.37953 * 120.14820 * 359.96941 * 23 21 20 25 25 H 1.09000 * 109.47455 * 305.34930 * 1 2 3 26 26 H 1.09008 * 109.46811 * 65.34949 * 1 2 3 27 27 H 1.09001 * 109.47298 * 185.34546 * 1 2 3 28 28 H 1.08999 * 109.47137 * 239.99977 * 2 1 3 29 29 H 1.08998 * 109.46626 * 119.99740 * 2 1 3 30 30 H 1.09004 * 109.47085 * 183.59736 * 4 3 2 31 31 H 1.09002 * 109.46930 * 303.59031 * 4 3 2 32 32 H 1.08992 * 109.47031 * 63.59627 * 4 3 2 33 33 H 1.08999 * 109.47393 * 252.56494 * 5 3 2 34 34 H 1.08997 * 109.47084 * 12.56270 * 5 3 2 35 35 H 1.09003 * 109.47358 * 132.56260 * 5 3 2 36 36 H 1.09007 * 109.47100 * 25.94992 * 7 6 3 37 37 H 1.08993 * 109.47372 * 145.95406 * 7 6 3 38 38 H 0.97000 * 119.99404 * 179.97438 * 11 10 8 39 39 H 1.08006 * 120.07470 * 359.97438 * 19 18 16 40 40 H 1.07998 * 119.92911 * 180.29916 * 20 19 18 41 41 H 1.08999 * 109.46438 * 90.00391 * 22 21 20 42 42 H 1.08999 * 109.47490 * 210.00402 * 22 21 20 43 43 H 1.08996 * 109.46767 * 330.01083 * 22 21 20 44 44 H 1.07999 * 119.92423 * 179.97438 * 23 21 20 45 45 H 1.08000 * 120.07943 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.0357 2.3385 -0.7277 5 6 3.3912 1.5057 -0.7148 6 7 2.1962 1.9053 1.3812 7 6 1.6036 3.1785 1.7985 8 6 2.6299 4.2750 1.6734 9 1 3.6240 4.0462 1.3190 10 6 2.2998 5.5701 2.0126 11 7 1.0893 5.8484 2.4447 12 14 3.5720 6.9291 1.8582 13 1 4.8468 6.3587 1.3535 14 1 3.0812 7.9613 0.9100 15 1 3.7995 7.5476 3.1890 16 6 2.8848 1.1597 2.2679 17 8 2.5261 1.1100 3.4283 18 6 4.0764 0.4023 1.8294 19 6 5.1765 0.2732 2.6785 20 6 6.2830 -0.4396 2.2653 21 6 6.3059 -1.0211 1.0100 22 6 7.5183 -1.7978 0.5650 23 6 5.2211 -0.8916 0.1610 24 6 4.1084 -0.1816 0.5619 25 1 -0.3634 0.5945 0.8382 26 1 -0.3633 0.4287 -0.9341 27 1 -0.3634 -1.0232 0.0957 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4285 3.3538 -0.7837 31 1 0.8714 1.9565 -1.7352 32 1 0.0918 2.3436 -0.1826 33 1 4.1829 1.6622 0.0178 34 1 3.5662 0.5692 -1.2444 35 1 3.3872 2.3307 -1.4273 36 1 0.7484 3.4070 1.1625 37 1 1.2758 3.1042 2.8353 38 1 0.8572 6.7594 2.6836 39 1 5.1600 0.7269 3.6585 40 1 7.1330 -0.5444 2.9232 41 1 7.4034 -2.8441 0.8482 42 1 7.6203 -1.7235 -0.5176 43 1 8.4080 -1.3877 1.0429 44 1 5.2455 -1.3476 -0.8177 45 1 3.2621 -0.0816 -0.1015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187522813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:08 Heat of formation + Delta-G solvation = 55.919526 kcal Electronic energy + Delta-G solvation = -24614.937755 eV Core-core repulsion = 21407.351220 eV Total energy + Delta-G solvation = -3207.586535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04230 -38.21177 -37.17554 -33.68015 -32.71179 -31.92495 -31.27660 -29.58976 -28.38388 -26.76937 -26.53985 -23.64217 -23.06958 -22.19416 -21.28627 -20.69713 -17.98524 -16.61513 -16.46117 -15.77070 -15.55504 -15.05449 -14.69101 -14.57368 -14.08206 -13.98502 -13.87982 -13.60303 -13.34459 -13.06442 -12.40146 -12.32423 -12.26787 -12.12887 -11.96533 -11.59972 -11.45195 -11.26616 -11.18666 -11.09960 -10.94725 -10.68573 -10.62964 -10.57171 -10.34909 -10.06744 -9.83503 -9.56680 -9.06956 -8.60016 -8.43790 -8.23108 -7.47157 -6.04898 -4.10288 1.25848 1.63984 3.24531 3.27658 3.35878 3.40093 3.86891 4.10487 4.42765 4.83263 4.90042 4.90530 5.02925 5.12614 5.21697 5.28717 5.29548 5.40324 5.49229 5.52002 5.59930 5.71802 5.76186 5.79733 5.85713 5.91037 6.03851 6.06315 6.15035 6.18587 6.21870 6.28545 6.37809 6.44547 6.53316 6.66732 6.71606 6.75363 6.81995 7.13156 7.19987 7.47670 7.66438 7.94940 8.24731 8.47260 8.83673 9.02498 9.55145 11.02067 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.006292 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.204270 B = 4448.886936 C = 5395.498968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.170 3.830 4 C -0.147 4.147 5 C -0.178 4.178 6 N -0.608 5.608 7 C 0.243 3.757 8 C -0.528 4.528 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.892 5.892 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.575 3.425 17 O -0.531 6.531 18 C -0.142 4.142 19 C -0.060 4.060 20 C -0.142 4.142 21 C -0.072 4.072 22 C -0.114 4.114 23 C -0.151 4.151 24 C -0.118 4.118 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.262 0.738 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.120 0.880 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.154 -13.925 -8.748 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.084 3.916 4 C -0.204 4.204 5 C -0.235 4.235 6 N -0.342 5.342 7 C 0.125 3.875 8 C -0.567 4.567 9 H 0.076 0.924 10 C -0.140 4.140 11 N -0.531 5.531 12 Si 0.721 3.279 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.364 3.636 17 O -0.408 6.408 18 C -0.145 4.145 19 C -0.079 4.079 20 C -0.160 4.160 21 C -0.072 4.072 22 C -0.171 4.171 23 C -0.169 4.169 24 C -0.135 4.135 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.138 0.862 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.815 -13.763 -8.049 16.971 hybrid contribution 0.907 0.999 -0.001 1.349 sum 6.722 -12.764 -8.050 16.520 Atomic orbital electron populations 1.21878 0.95108 1.01198 1.02541 1.22491 0.97436 0.96361 1.02141 1.20372 0.94978 0.93015 0.83250 1.22199 0.99074 1.00593 0.98493 1.23342 0.98187 1.00857 1.01153 1.47944 1.55020 1.23011 1.08220 1.19397 0.94065 0.77179 0.96909 1.21570 0.98421 0.92445 1.44257 0.92408 1.24921 0.95409 0.98560 0.95071 1.69946 1.18751 1.20073 1.44364 0.86512 0.81685 0.81890 0.77792 1.19802 1.20929 1.20932 1.18036 0.82088 0.78256 0.85252 1.90683 1.68147 1.61915 1.20060 1.20382 0.96576 1.02138 0.95429 1.21197 0.92010 0.95816 0.98915 1.20867 0.98638 1.00267 0.96253 1.20013 0.95664 0.97252 0.94257 1.20802 0.95306 0.99436 1.01507 1.20873 0.94014 1.02019 1.00023 1.23653 1.01376 0.93040 0.95388 0.91908 0.92151 0.93286 0.90828 0.90996 0.90346 0.92465 0.91384 0.90001 0.91707 0.92294 0.93742 0.94379 0.92795 0.85484 0.86116 0.91305 0.91645 0.91674 0.86190 0.79610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.58 37.16 0.32 -1.66 16 2 C -0.15 -2.04 4.08 -26.73 -0.11 -2.15 16 3 C 0.17 2.82 0.88 -131.82 -0.12 2.71 16 4 C -0.15 -2.36 5.56 37.16 0.21 -2.15 16 5 C -0.18 -2.70 7.50 37.16 0.28 -2.42 16 6 N -0.61 -13.06 2.35 -161.28 -0.38 -13.44 16 7 C 0.24 6.26 4.76 -5.19 -0.02 6.24 16 8 C -0.53 -14.61 9.33 -34.44 -0.32 -14.93 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 12 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 16 C 0.58 12.79 5.69 -12.33 -0.07 12.72 16 17 O -0.53 -13.71 16.81 5.32 0.09 -13.62 16 18 C -0.14 -2.61 4.70 -104.97 -0.49 -3.10 16 19 C -0.06 -1.04 9.62 -39.19 -0.38 -1.42 16 20 C -0.14 -1.99 9.68 -39.64 -0.38 -2.38 16 21 C -0.07 -0.90 5.89 -104.53 -0.62 -1.52 16 22 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 23 C -0.15 -1.94 9.58 -39.64 -0.38 -2.32 16 24 C -0.12 -1.76 4.44 -39.18 -0.17 -1.94 16 25 H 0.06 0.97 7.67 -51.93 -0.40 0.58 16 26 H 0.06 0.70 6.77 -51.92 -0.35 0.35 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.80 6.93 -51.93 -0.36 0.44 16 29 H 0.07 1.12 5.39 -51.93 -0.28 0.84 16 30 H 0.08 1.46 7.55 -51.93 -0.39 1.07 16 31 H 0.06 0.72 7.77 -51.93 -0.40 0.32 16 32 H 0.07 1.14 5.64 -51.93 -0.29 0.85 16 33 H 0.08 1.45 5.09 -51.93 -0.26 1.18 16 34 H 0.06 0.77 5.45 -51.93 -0.28 0.49 16 35 H 0.06 0.88 7.61 -51.93 -0.40 0.48 16 36 H 0.04 1.13 5.43 -51.93 -0.28 0.85 16 37 H 0.04 1.13 7.48 -51.93 -0.39 0.74 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.13 2.24 8.02 -52.48 -0.42 1.82 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 43 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.19 2.55 0.71 -83.69 -0.06 2.49 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -31.97 341.27 -8.08 -40.05 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.65 Total: 3.93 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.00 Total: -13.33 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.36 Total: -38.77 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.97 -8.08 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187522813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.970 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds