Wall clock time and date at job start Tue Mar 31 2020 06:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46875 * 2 1 4 4 C 1.53001 * 109.47224 * 329.70558 * 3 2 1 5 5 C 1.53001 * 109.46846 * 209.70599 * 3 2 1 6 6 N 1.46499 * 109.47362 * 89.71033 * 3 2 1 7 7 C 1.46503 * 119.99962 * 230.63405 * 6 3 2 8 8 C 1.50702 * 109.46530 * 265.95671 * 7 6 3 9 9 H 1.07994 * 119.99991 * 359.97438 * 8 7 6 10 10 C 1.37888 * 119.99794 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99490 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00010 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.47043 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47433 * 119.99771 * 12 10 8 15 15 H 1.48502 * 109.47058 * 239.99892 * 12 10 8 16 16 C 1.34775 * 120.00193 * 50.62269 * 6 3 2 17 17 O 1.21549 * 119.99968 * 216.15111 * 16 6 3 18 18 C 1.47849 * 120.00073 * 36.15132 * 16 6 3 19 19 C 1.39568 * 120.14599 * 143.64344 * 18 16 6 20 20 C 1.37958 * 119.85324 * 179.72837 * 19 18 16 21 21 C 1.38359 * 120.14575 * 0.26978 * 20 19 18 22 22 C 1.50701 * 119.85635 * 179.97438 * 21 20 19 23 23 C 1.38362 * 120.28978 * 0.02562 * 21 20 19 24 24 C 1.37953 * 120.14820 * 359.96941 * 23 21 20 25 25 H 1.09000 * 109.47455 * 305.34930 * 1 2 3 26 26 H 1.09008 * 109.46811 * 65.34949 * 1 2 3 27 27 H 1.09001 * 109.47298 * 185.34546 * 1 2 3 28 28 H 1.08999 * 109.47137 * 239.99977 * 2 1 3 29 29 H 1.08998 * 109.46626 * 119.99740 * 2 1 3 30 30 H 1.09004 * 109.47085 * 183.59736 * 4 3 2 31 31 H 1.09002 * 109.46930 * 303.59031 * 4 3 2 32 32 H 1.08992 * 109.47031 * 63.59627 * 4 3 2 33 33 H 1.08999 * 109.47393 * 252.56494 * 5 3 2 34 34 H 1.08997 * 109.47084 * 12.56270 * 5 3 2 35 35 H 1.09003 * 109.47358 * 132.56260 * 5 3 2 36 36 H 1.09007 * 109.47100 * 25.94992 * 7 6 3 37 37 H 1.08993 * 109.47372 * 145.95406 * 7 6 3 38 38 H 0.97000 * 119.99404 * 179.97438 * 11 10 8 39 39 H 1.08006 * 120.07470 * 359.97438 * 19 18 16 40 40 H 1.07998 * 119.92911 * 180.29916 * 20 19 18 41 41 H 1.08999 * 109.46438 * 90.00391 * 22 21 20 42 42 H 1.08999 * 109.47490 * 210.00402 * 22 21 20 43 43 H 1.08996 * 109.46767 * 330.01083 * 22 21 20 44 44 H 1.07999 * 119.92423 * 179.97438 * 23 21 20 45 45 H 1.08000 * 120.07943 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.0357 2.3385 -0.7277 5 6 3.3912 1.5057 -0.7148 6 7 2.1962 1.9053 1.3812 7 6 1.6036 3.1785 1.7985 8 6 2.6299 4.2750 1.6734 9 1 3.6240 4.0462 1.3190 10 6 2.2998 5.5701 2.0126 11 7 1.0893 5.8484 2.4447 12 14 3.5720 6.9291 1.8582 13 1 4.8468 6.3587 1.3535 14 1 3.0812 7.9613 0.9100 15 1 3.7995 7.5476 3.1890 16 6 2.8848 1.1597 2.2679 17 8 2.5261 1.1100 3.4283 18 6 4.0764 0.4023 1.8294 19 6 5.1765 0.2732 2.6785 20 6 6.2830 -0.4396 2.2653 21 6 6.3059 -1.0211 1.0100 22 6 7.5183 -1.7978 0.5650 23 6 5.2211 -0.8916 0.1610 24 6 4.1084 -0.1816 0.5619 25 1 -0.3634 0.5945 0.8382 26 1 -0.3633 0.4287 -0.9341 27 1 -0.3634 -1.0232 0.0957 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4285 3.3538 -0.7837 31 1 0.8714 1.9565 -1.7352 32 1 0.0918 2.3436 -0.1826 33 1 4.1829 1.6622 0.0178 34 1 3.5662 0.5692 -1.2444 35 1 3.3872 2.3307 -1.4273 36 1 0.7484 3.4070 1.1625 37 1 1.2758 3.1042 2.8353 38 1 0.8572 6.7594 2.6836 39 1 5.1600 0.7269 3.6585 40 1 7.1330 -0.5444 2.9232 41 1 7.4034 -2.8441 0.8482 42 1 7.6203 -1.7235 -0.5176 43 1 8.4080 -1.3877 1.0429 44 1 5.2455 -1.3476 -0.8177 45 1 3.2621 -0.0816 -0.1015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187522813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:07 Heat of formation + Delta-G solvation = 37.163977 kcal Electronic energy + Delta-G solvation = -24615.751056 eV Core-core repulsion = 21407.351220 eV Total energy + Delta-G solvation = -3208.399837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.42914 -39.45961 -38.79021 -35.57601 -33.89792 -33.76205 -32.42614 -30.83719 -29.90646 -28.24095 -27.86755 -25.09315 -24.63133 -23.40019 -22.69263 -22.06051 -19.39783 -18.62988 -18.04994 -17.37404 -16.80809 -16.54095 -16.37386 -15.83908 -15.51561 -15.32139 -15.08776 -14.71997 -14.57814 -14.38278 -14.23690 -13.70656 -13.42508 -13.39163 -13.11861 -12.97755 -12.93688 -12.71887 -12.64796 -12.40208 -12.32852 -12.30401 -12.28192 -11.91265 -11.76993 -11.70852 -11.56634 -10.95727 -10.79559 -10.63314 -9.73398 -9.45683 -9.19537 -8.21915 -6.37731 0.03250 0.51270 1.33371 1.35340 1.47084 1.68616 2.26778 2.40961 2.86723 3.06033 3.60296 3.70636 3.75665 3.98246 4.01323 4.05558 4.20562 4.32342 4.45275 4.52276 4.55483 4.68562 4.71581 4.77667 4.82954 4.87207 4.91638 4.92916 4.99137 5.03606 5.14320 5.14968 5.18323 5.21725 5.29142 5.33965 5.40585 5.46707 5.47487 5.56559 5.61944 5.67569 5.94990 6.07017 6.10214 6.69705 6.80951 7.17880 7.36150 8.83858 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.006292 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.204270 B = 4448.886936 C = 5395.498968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.157 3.843 4 C -0.142 4.142 5 C -0.175 4.175 6 N -0.612 5.612 7 C 0.261 3.739 8 C -0.538 4.538 9 H 0.051 0.949 10 C 0.011 3.989 11 N -0.926 5.926 12 Si 0.963 3.037 13 H -0.268 1.268 14 H -0.267 1.267 15 H -0.283 1.283 16 C 0.566 3.434 17 O -0.592 6.592 18 C -0.174 4.174 19 C -0.087 4.087 20 C -0.144 4.144 21 C -0.061 4.061 22 C -0.112 4.112 23 C -0.145 4.145 24 C -0.111 4.111 25 H 0.023 0.977 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.042 0.958 37 H -0.018 1.018 38 H 0.267 0.733 39 H 0.101 0.899 40 H 0.143 0.857 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.165 0.835 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.642 -15.999 -12.681 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.073 3.927 4 C -0.199 4.199 5 C -0.231 4.231 6 N -0.344 5.344 7 C 0.140 3.860 8 C -0.577 4.577 9 H 0.069 0.931 10 C -0.188 4.188 11 N -0.566 5.566 12 Si 0.787 3.213 13 H -0.192 1.192 14 H -0.192 1.192 15 H -0.208 1.208 16 C 0.357 3.643 17 O -0.473 6.473 18 C -0.177 4.177 19 C -0.106 4.106 20 C -0.162 4.162 21 C -0.061 4.061 22 C -0.169 4.169 23 C -0.162 4.162 24 C -0.127 4.127 25 H 0.042 0.958 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.141 0.859 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.000 1.000 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.161 0.839 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.182 0.818 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 8.310 -15.857 -12.031 21.570 hybrid contribution 0.139 1.571 1.227 1.998 sum 8.449 -14.286 -10.804 19.804 Atomic orbital electron populations 1.21870 0.94750 1.01928 1.02024 1.22502 0.97799 0.94263 1.03462 1.20855 0.96548 0.94780 0.80505 1.22167 0.97873 0.99082 1.00777 1.23295 0.95924 1.03404 1.00502 1.47952 1.54544 1.21388 1.10535 1.18858 0.94027 0.79371 0.93700 1.21738 0.98293 0.93303 1.44349 0.93070 1.25802 0.97469 1.01034 0.94474 1.70067 1.20640 1.20860 1.45010 0.85438 0.79080 0.78810 0.77941 1.19243 1.19241 1.20848 1.18833 0.82851 0.78087 0.84512 1.90623 1.69681 1.64502 1.22532 1.20113 0.95140 1.04541 0.97919 1.21203 0.93571 0.97606 0.98226 1.21122 0.97931 0.99501 0.97674 1.20533 0.96921 0.95607 0.93054 1.20899 0.93508 0.99604 1.02869 1.21369 0.92623 1.00550 1.01680 1.23766 1.02772 0.92492 0.93681 0.95789 0.89996 0.91268 0.85876 0.92927 0.93474 0.87819 0.93034 0.92556 0.87126 0.92030 0.94015 0.99973 0.92438 0.88075 0.83925 0.89629 0.89587 0.90832 0.81752 0.78388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 8.58 71.98 0.62 -3.11 16 2 C -0.14 -3.68 4.08 30.59 0.12 -3.55 16 3 C 0.16 5.15 0.88 3.60 0.00 5.15 16 4 C -0.14 -4.52 5.56 71.98 0.40 -4.12 16 5 C -0.17 -4.87 7.50 71.98 0.54 -4.33 16 6 N -0.61 -27.96 2.35 -782.43 -1.84 -29.80 16 7 C 0.26 14.59 4.76 85.63 0.41 15.00 16 8 C -0.54 -31.42 9.33 25.60 0.24 -31.19 16 9 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 10 C 0.01 0.66 5.46 84.66 0.46 1.12 16 11 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 12 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 16 C 0.57 27.16 5.69 86.79 0.49 27.65 16 17 O -0.59 -33.90 16.81 -3.87 -0.07 -33.96 16 18 C -0.17 -6.61 4.70 -20.09 -0.09 -6.71 16 19 C -0.09 -3.13 9.62 22.52 0.22 -2.91 16 20 C -0.14 -3.84 9.68 22.23 0.22 -3.63 16 21 C -0.06 -1.29 5.89 -19.81 -0.12 -1.41 16 22 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 23 C -0.14 -3.01 9.58 22.23 0.21 -2.80 16 24 C -0.11 -3.05 4.44 22.53 0.10 -2.95 16 25 H 0.02 0.76 7.67 -2.39 -0.02 0.75 16 26 H 0.08 1.68 6.77 -2.38 -0.02 1.66 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.12 1.99 6.93 -2.39 -0.02 1.97 16 29 H 0.05 1.61 5.39 -2.39 -0.01 1.59 16 30 H 0.05 1.79 7.55 -2.38 -0.02 1.77 16 31 H 0.10 2.30 7.77 -2.39 -0.02 2.28 16 32 H 0.05 1.79 5.64 -2.39 -0.01 1.77 16 33 H 0.06 1.93 5.09 -2.39 -0.01 1.91 16 34 H 0.11 2.04 5.45 -2.39 -0.01 2.03 16 35 H 0.06 1.68 7.61 -2.39 -0.02 1.66 16 36 H 0.04 2.32 5.43 -2.38 -0.01 2.30 16 37 H -0.02 -1.18 7.48 -2.39 -0.02 -1.19 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.10 3.99 8.02 -2.91 -0.02 3.97 16 40 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 43 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 44 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.20 4.76 0.71 -32.22 -0.02 4.73 16 Total: -1.00 -78.68 341.27 5.91 -72.78 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.97 Total: 18.31 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.54 Total: -18.49 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -1.56 Total: -86.01 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.07 Total: -33.96 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -78.68 5.91 -72.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187522813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.939 kcal (2) G-P(sol) polarization free energy of solvation -78.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds