Wall clock time and date at job start Tue Mar 31 2020 06:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47601 * 2 1 4 4 C 1.53007 * 109.46834 * 120.00434 * 2 1 3 5 5 C 1.52998 * 109.47343 * 59.99711 * 4 2 1 6 6 C 1.53007 * 109.46771 * 299.99653 * 4 2 1 7 7 C 1.52994 * 109.47022 * 179.97438 * 4 2 1 8 8 N 1.46504 * 109.47299 * 179.97438 * 7 4 2 9 9 C 1.34776 * 120.00240 * 179.97438 * 8 7 4 10 10 O 1.21548 * 119.99831 * 0.02562 * 9 8 7 11 11 C 1.47887 * 119.99947 * 180.02562 * 9 8 7 12 12 C 1.39920 * 120.02576 * 359.97438 * 11 9 8 13 13 C 1.38323 * 120.35647 * 180.02562 * 12 11 9 14 14 C 1.37750 * 120.41861 * 0.02562 * 13 12 11 15 15 C 1.40753 * 120.03516 * 0.02562 * 14 13 12 16 16 C 1.41437 * 120.17930 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99802 * 335.21217 * 16 15 14 18 18 C 1.39934 * 120.00493 * 155.21585 * 16 15 14 19 19 N 1.30832 * 119.99780 * 342.27478 * 18 16 15 20 20 Si 1.86793 * 120.00293 * 162.27314 * 18 16 15 21 21 H 1.48498 * 109.47207 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47097 * 119.99920 * 20 18 16 23 23 H 1.48499 * 109.47533 * 240.00241 * 20 18 16 24 24 C 1.38996 * 120.02484 * 180.02562 * 11 9 8 25 25 H 1.08997 * 109.46830 * 300.00330 * 1 2 3 26 26 H 1.09004 * 109.46896 * 59.99607 * 1 2 3 27 27 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46830 * 239.99670 * 2 1 3 29 29 H 1.08999 * 109.47666 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47440 * 300.00113 * 3 2 1 31 31 H 1.09001 * 109.46845 * 59.99738 * 3 2 1 32 32 H 1.09003 * 109.46913 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47010 * 300.00062 * 5 4 2 34 34 H 1.09001 * 109.47092 * 60.00232 * 5 4 2 35 35 H 1.09003 * 109.46537 * 300.00006 * 6 4 2 36 36 H 1.08991 * 109.46806 * 60.00117 * 6 4 2 37 37 H 1.09003 * 109.46629 * 180.02562 * 6 4 2 38 38 H 1.09002 * 109.47948 * 59.99616 * 7 4 2 39 39 H 1.09001 * 109.47217 * 299.99647 * 7 4 2 40 40 H 0.97005 * 119.99849 * 0.02562 * 8 7 4 41 41 H 1.07997 * 119.81917 * 0.02562 * 12 11 9 42 42 H 1.08006 * 119.79098 * 179.97438 * 13 12 11 43 43 H 1.07992 * 119.98570 * 180.02562 * 14 13 12 44 44 H 0.96997 * 120.00049 * 180.02562 * 19 18 16 45 45 H 1.08004 * 120.19786 * 0.27154 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 1.5299 -2.1638 1.2492 6 6 1.5299 -0.0001 2.4985 7 6 3.5699 -0.7220 1.2490 8 7 4.0583 -1.4122 2.4454 9 6 5.3833 -1.5361 2.6583 10 8 6.1732 -1.0749 1.8578 11 6 5.8762 -2.2334 3.8658 12 6 4.9674 -2.7640 4.7879 13 6 5.4208 -3.4170 5.9198 14 6 6.7717 -3.5521 6.1530 15 6 7.7010 -3.0238 5.2372 16 6 9.0887 -3.1613 5.4733 17 1 9.4548 -3.2908 6.4811 18 6 9.9875 -3.1294 4.4013 19 7 9.5569 -3.3213 3.1808 20 14 11.8019 -2.8128 4.7126 21 1 12.0297 -2.6293 6.1685 22 1 12.5964 -3.9707 4.2298 23 1 12.2222 -1.5871 3.9871 24 6 7.2426 -2.3611 4.0861 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1301 1.4424 0.0005 30 1 1.6769 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.8929 -2.6776 2.1395 33 1 0.4399 -2.1638 1.2492 34 1 1.8933 -2.6777 0.3592 35 1 1.8934 1.0276 2.4985 36 1 0.4400 0.0000 2.4984 37 1 1.8936 -0.5137 3.3885 38 1 3.9338 0.3055 1.2488 39 1 3.9329 -1.2361 0.3590 40 1 3.4279 -1.7806 3.0841 41 1 3.9061 -2.6632 4.6148 42 1 4.7112 -3.8227 6.6258 43 1 7.1180 -4.0635 7.0388 44 1 10.1800 -3.2995 2.4377 45 1 7.9477 -1.9484 3.3796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189452154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:28 Heat of formation + Delta-G solvation = -61.436349 kcal Electronic energy + Delta-G solvation = -23075.867953 eV Core-core repulsion = 19863.192485 eV Total energy + Delta-G solvation = -3212.675468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17026 -39.70508 -38.65695 -35.70702 -35.25562 -32.44559 -31.58232 -31.26531 -29.04221 -28.15099 -27.26163 -26.56911 -24.36131 -22.93593 -22.64776 -21.25388 -19.72803 -18.97805 -17.95589 -17.25136 -16.76098 -16.46358 -16.34968 -15.97369 -15.51436 -15.32419 -14.96229 -14.81546 -14.66529 -14.32642 -14.26596 -13.75691 -13.50292 -13.18964 -12.98891 -12.92826 -12.79745 -12.75993 -12.66906 -12.53960 -12.23103 -12.17002 -12.00375 -11.90280 -11.51692 -11.37353 -11.28223 -11.21865 -11.08797 -10.75954 -10.10896 -9.47003 -9.38881 -8.67256 -6.38764 0.37788 0.99889 1.35922 1.46125 1.52355 2.10132 2.18894 2.28515 2.78373 3.65269 3.69335 3.77240 3.83560 4.04794 4.23757 4.31816 4.40982 4.44261 4.57861 4.65314 4.70386 4.71434 4.82820 4.89967 4.90797 5.00181 5.01203 5.07135 5.08452 5.13219 5.17719 5.18974 5.20242 5.30376 5.30949 5.37905 5.49538 5.52978 5.58841 5.63844 5.86127 5.92153 6.04831 6.28125 6.51231 6.68857 6.87411 6.94216 7.31808 8.29768 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026230 B = 0.003520 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.204017 B = 7953.053971 C = 8670.906083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.155 4.155 4 C -0.062 4.062 5 C -0.146 4.146 6 C -0.147 4.147 7 C 0.127 3.873 8 N -0.708 5.708 9 C 0.557 3.443 10 O -0.593 6.593 11 C -0.139 4.139 12 C -0.198 4.198 13 C -0.094 4.094 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.497 4.497 17 H 0.084 0.916 18 C 0.028 3.972 19 N -0.825 5.825 20 Si 0.983 3.017 21 H -0.251 1.251 22 H -0.264 1.264 23 H -0.271 1.271 24 C -0.131 4.131 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.411 0.589 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.109 0.891 44 H 0.286 0.714 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.920 4.817 -3.362 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 C -0.212 4.212 4 C -0.062 4.062 5 C -0.203 4.203 6 C -0.204 4.204 7 C 0.004 3.996 8 N -0.361 5.361 9 C 0.347 3.653 10 O -0.475 6.475 11 C -0.142 4.142 12 C -0.217 4.217 13 C -0.112 4.112 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.526 4.526 17 H 0.102 0.898 18 C -0.186 4.186 19 N -0.451 5.451 20 Si 0.804 3.196 21 H -0.174 1.174 22 H -0.188 1.188 23 H -0.196 1.196 24 C -0.151 4.151 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.250 0.750 41 H 0.152 0.848 42 H 0.158 0.842 43 H 0.127 0.873 44 H 0.096 0.904 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.333 5.119 -4.182 18.550 hybrid contribution 1.154 -0.129 0.003 1.162 sum -16.178 4.990 -4.178 17.438 Atomic orbital electron populations 1.21911 0.93342 1.02505 1.02434 1.21048 0.97151 0.95698 0.96102 1.21991 1.00434 0.96266 1.02542 1.20757 0.90981 0.97086 0.97366 1.21970 1.02412 0.94153 1.01766 1.22012 1.02350 1.00222 0.95796 1.21548 0.95103 0.96325 0.86643 1.45805 1.05655 1.58672 1.25987 1.18783 0.82748 0.78318 0.85478 1.90664 1.57080 1.51151 1.48557 1.19798 0.94731 1.03802 0.95908 1.20818 0.97788 1.06709 0.96426 1.20921 0.94972 0.98278 0.97053 1.21414 0.93640 1.06441 1.02190 1.17955 0.94361 0.89592 0.91593 1.19888 0.91630 1.46043 0.95033 0.89752 1.26874 1.06494 0.91357 0.93924 1.69904 1.39363 1.34702 1.01144 0.85142 0.75655 0.78750 0.80087 1.17369 1.18840 1.19602 1.21423 0.93497 1.00669 0.99544 0.91644 0.92181 0.91756 0.91593 0.94007 0.91782 0.91712 0.92910 0.89877 0.93075 0.92454 0.89972 0.92951 0.92485 0.93464 0.75028 0.84835 0.84246 0.87266 0.90352 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.49 71.98 0.61 -1.12 16 2 C -0.08 -1.31 2.28 -10.79 -0.02 -1.34 16 3 C -0.16 -2.62 8.49 71.98 0.61 -2.01 16 4 C -0.06 -1.16 0.33 -52.18 -0.02 -1.17 16 5 C -0.15 -2.51 7.95 71.98 0.57 -1.94 16 6 C -0.15 -2.44 7.60 71.98 0.55 -1.89 16 7 C 0.13 3.58 4.21 86.38 0.36 3.94 16 8 N -0.71 -23.13 4.91 -465.93 -2.29 -25.42 16 9 C 0.56 25.29 7.77 86.80 0.67 25.96 16 10 O -0.59 -31.95 16.33 -3.87 -0.06 -32.02 16 11 C -0.14 -6.72 5.87 -20.13 -0.12 -6.84 16 12 C -0.20 -7.85 9.55 22.70 0.22 -7.63 16 13 C -0.09 -3.75 10.01 22.17 0.22 -3.52 16 14 C -0.22 -10.21 9.78 22.77 0.22 -9.99 16 15 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16 16 C -0.50 -27.37 9.05 23.47 0.21 -27.16 16 17 H 0.08 4.38 7.91 -2.91 -0.02 4.36 16 18 C 0.03 1.50 5.14 85.25 0.44 1.94 16 19 N -0.83 -46.84 10.97 21.82 0.24 -46.60 16 20 Si 0.98 40.20 29.59 68.60 2.03 42.23 16 21 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 C -0.13 -7.40 8.23 23.01 0.19 -7.22 16 25 H 0.06 0.71 6.43 -2.39 -0.02 0.69 16 26 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.06 0.70 6.43 -2.39 -0.02 0.69 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.86 6.43 -2.39 -0.02 0.84 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.01 6.43 -2.39 -0.02 1.00 16 32 H 0.05 0.96 6.86 -2.39 -0.02 0.94 16 33 H 0.08 1.07 6.43 -2.39 -0.02 1.06 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.01 6.43 -2.39 -0.02 0.99 16 36 H 0.08 1.03 6.43 -2.39 -0.02 1.01 16 37 H 0.05 0.92 6.86 -2.39 -0.02 0.90 16 38 H 0.06 1.73 6.43 -2.39 -0.02 1.72 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.41 11.05 4.18 -92.70 -0.39 10.67 16 41 H 0.13 4.03 6.38 -2.91 -0.02 4.01 16 42 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 43 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 44 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16 45 H 0.10 6.12 5.77 -2.91 -0.02 6.10 16 Total: -1.00 -68.97 347.94 5.13 -63.85 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.61 Total: 34.37 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 4.60 Total: -36.41 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -2.05 Total: -72.01 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.06 Total: -32.02 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -68.97 5.13 -63.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189452154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.409 kcal (2) G-P(sol) polarization free energy of solvation -68.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds