Wall clock time and date at job start Tue Mar 31 2020 06:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47294 * 2 1 4 4 C 1.53003 * 109.47654 * 240.00010 * 2 1 3 5 5 C 1.50699 * 109.47094 * 119.99883 * 2 1 3 6 6 C 1.38235 * 120.00231 * 59.99967 * 5 2 1 7 7 C 1.38237 * 120.00387 * 179.97438 * 6 5 2 8 8 C 1.38240 * 119.99773 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.99620 * 180.02562 * 8 7 6 10 10 N 1.46894 * 109.47601 * 90.00098 * 9 8 7 11 11 C 1.47473 * 111.00442 * 74.02491 * 10 9 8 12 12 C 1.53509 * 87.93540 * 138.70432 * 11 10 9 13 13 O 1.42899 * 114.34282 * 87.63531 * 12 11 10 14 14 C 1.50699 * 114.17310 * 220.32829 * 12 11 10 15 15 H 1.08001 * 120.00161 * 99.31565 * 14 12 11 16 16 C 1.37875 * 120.00037 * 279.31804 * 14 12 11 17 17 N 1.31514 * 119.99970 * 10.18243 * 16 14 12 18 18 Si 1.86801 * 120.00030 * 190.18126 * 16 14 12 19 19 H 1.48497 * 109.47311 * 84.99588 * 18 16 14 20 20 H 1.48504 * 109.46917 * 204.99657 * 18 16 14 21 21 H 1.48501 * 109.47151 * 324.99449 * 18 16 14 22 22 C 1.47481 * 111.00464 * 169.99866 * 10 9 8 23 23 C 1.38233 * 119.99927 * 0.27003 * 8 7 6 24 24 C 1.38237 * 119.99932 * 239.98023 * 5 2 1 25 25 H 1.08998 * 109.47702 * 300.00278 * 1 2 3 26 26 H 1.09005 * 109.47085 * 60.00338 * 1 2 3 27 27 H 1.08996 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47011 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46836 * 299.99919 * 3 2 1 30 30 H 1.09002 * 109.46758 * 59.99707 * 3 2 1 31 31 H 1.09006 * 109.46844 * 300.00390 * 4 2 1 32 32 H 1.08995 * 109.47074 * 59.99715 * 4 2 1 33 33 H 1.08996 * 109.47441 * 180.02562 * 4 2 1 34 34 H 1.08005 * 119.99697 * 359.97438 * 6 5 2 35 35 H 1.07990 * 119.99880 * 180.02562 * 7 6 5 36 36 H 1.08997 * 109.47234 * 329.99464 * 9 8 7 37 37 H 1.09008 * 109.46516 * 209.99967 * 9 8 7 38 38 H 1.09004 * 113.47467 * 253.47622 * 11 10 9 39 39 H 1.09001 * 113.47605 * 23.93574 * 11 10 9 40 40 H 0.96709 * 114.00164 * 90.08056 * 13 12 11 41 41 H 0.97003 * 119.99966 * 179.97438 * 17 16 14 42 42 H 1.09002 * 113.47125 * 336.06139 * 22 10 9 43 43 H 1.08996 * 113.47788 * 106.46579 * 22 10 9 44 44 H 1.08003 * 120.00211 * 179.72811 * 23 8 7 45 45 H 1.08003 * 120.00336 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0322 -0.7104 1.2305 6 6 1.6983 -2.0338 1.4493 7 6 2.1595 -2.6856 2.5777 8 6 2.9551 -2.0141 3.4871 9 6 3.4584 -2.7249 4.7170 10 7 4.7520 -3.3557 4.4232 11 6 5.8258 -2.3478 4.3445 12 6 6.7237 -3.3252 5.1159 13 8 7.4307 -4.2526 4.2901 14 6 7.5949 -2.6719 6.1576 15 1 7.2992 -2.6881 7.1963 16 6 8.7694 -2.0535 5.7848 17 7 9.0333 -1.8561 4.5117 18 14 9.9859 -1.4959 7.0882 19 1 10.8680 -2.6311 7.4600 20 1 10.8104 -0.3832 6.5520 21 1 9.2463 -1.0299 8.2886 22 6 5.3884 -3.8559 5.6560 23 6 3.2849 -0.6892 3.2709 24 6 2.8273 -0.0387 2.1402 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 1.0770 -2.5586 0.7386 35 1 1.8989 -3.7196 2.7484 36 1 2.7405 -3.4893 5.0141 37 1 3.5803 -2.0062 5.5275 38 1 6.1669 -2.1553 3.3273 39 1 5.6047 -1.4339 4.8957 40 1 8.2989 -3.9395 4.0011 41 1 9.8595 -1.4207 4.2494 42 1 5.0505 -3.3443 6.5573 43 1 5.3578 -4.9412 5.7509 44 1 3.9029 -0.1632 3.9836 45 1 3.0889 0.9951 1.9689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189540706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:57 Heat of formation + Delta-G solvation = -3.152247 kcal Electronic energy + Delta-G solvation = -23174.034206 eV Core-core repulsion = 19963.886127 eV Total energy + Delta-G solvation = -3210.148079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.93839 -38.96405 -36.44794 -34.27603 -32.15277 -31.12579 -30.87831 -27.77005 -27.42479 -27.34192 -25.63205 -24.80855 -22.91961 -22.09537 -20.99655 -19.10216 -18.60682 -17.26137 -16.37347 -15.31064 -15.13414 -14.97024 -14.79585 -14.33894 -14.14371 -13.96808 -13.90213 -13.57003 -13.21890 -12.73277 -12.69262 -12.37561 -12.10952 -12.05268 -11.84189 -11.76238 -11.59869 -11.42158 -11.29078 -11.04879 -11.01978 -10.79690 -10.70429 -10.47278 -10.36584 -10.17752 -9.96191 -9.17568 -8.76974 -8.62474 -8.32110 -8.07310 -7.83219 -6.25794 -4.34563 1.60526 1.69913 3.20604 3.28014 3.30095 3.98618 4.26611 4.57053 4.69837 4.91650 4.94629 5.04543 5.15130 5.23053 5.25768 5.28463 5.45010 5.50372 5.63275 5.65594 5.69133 5.75816 5.77917 5.88980 5.89250 5.92249 5.95244 5.98813 6.10528 6.18699 6.21991 6.31346 6.32947 6.34618 6.47885 6.69462 6.72420 6.83633 6.96399 7.16738 7.21165 7.29671 7.37023 7.73996 7.95870 8.06247 8.66920 9.34547 9.47363 10.79699 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.003641 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.932788 B = 7688.252805 C = 8223.449351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.028 4.028 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.101 4.101 8 C -0.066 4.066 9 C 0.054 3.946 10 N -0.467 5.467 11 C -0.006 4.006 12 C 0.245 3.755 13 O -0.565 6.565 14 C -0.542 4.542 15 H 0.066 0.934 16 C 0.073 3.927 17 N -0.887 5.887 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.003 3.997 23 C -0.107 4.107 24 C -0.121 4.121 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.382 0.618 41 H 0.269 0.731 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.594 4.682 -7.369 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.081 4.081 6 C -0.137 4.137 7 C -0.120 4.120 8 C -0.067 4.067 9 C -0.075 4.075 10 N -0.189 5.189 11 C -0.135 4.135 12 C 0.204 3.796 13 O -0.373 6.373 14 C -0.580 4.580 15 H 0.084 0.916 16 C -0.131 4.131 17 N -0.526 5.526 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.139 4.139 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.232 0.768 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.137 0.863 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.170 3.951 -7.959 17.581 hybrid contribution 1.244 1.324 1.258 2.209 sum -13.927 5.275 -6.701 16.330 Atomic orbital electron populations 1.21873 0.94019 1.01909 1.01561 1.19460 0.95397 0.94974 0.92966 1.21960 1.01451 0.95061 1.01623 1.21887 1.01531 1.00117 0.96006 1.19694 0.98461 0.94187 0.95733 1.20851 1.00983 0.94273 0.97596 1.20952 0.97666 0.99330 0.94039 1.19777 0.96564 0.93644 0.96682 1.21631 0.95248 0.97119 0.93460 1.69076 0.99211 1.22985 1.27641 1.24501 0.92278 0.95167 1.01523 1.19357 0.87351 0.85344 0.87537 1.86078 1.35599 1.45180 1.70396 1.21498 1.06359 1.35961 0.94227 0.91609 1.25064 0.97967 0.94344 0.95693 1.69803 1.25436 1.42194 1.15123 0.86522 0.81045 0.78296 0.81662 1.20198 1.21103 1.19808 1.24085 0.96067 1.00481 0.91966 1.21104 0.99098 0.94553 0.97777 1.21081 0.98444 1.00007 0.94361 0.92610 0.92633 0.92511 0.92117 0.92638 0.92340 0.92476 0.92641 0.92327 0.86686 0.86338 0.90931 0.93820 0.91345 0.92522 0.76785 0.92139 0.91780 0.91148 0.86326 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.29 37.15 0.31 -0.93 16 2 C -0.03 -0.29 0.85 -155.66 -0.13 -0.43 16 3 C -0.14 -1.38 7.13 37.16 0.27 -1.11 16 4 C -0.14 -1.38 8.29 37.16 0.31 -1.07 16 5 C -0.08 -1.06 4.76 -104.62 -0.50 -1.56 16 6 C -0.12 -1.61 8.71 -39.58 -0.34 -1.95 16 7 C -0.10 -1.54 9.70 -39.58 -0.38 -1.92 16 8 C -0.07 -1.11 5.18 -104.63 -0.54 -1.65 16 9 C 0.05 0.95 4.98 -4.98 -0.02 0.93 16 10 N -0.47 -10.00 6.40 -246.12 -1.58 -11.58 16 11 C -0.01 -0.13 6.26 -7.56 -0.05 -0.18 16 12 C 0.25 6.26 1.40 -91.25 -0.13 6.13 16 13 O -0.56 -15.23 13.57 -35.23 -0.48 -15.71 16 14 C -0.54 -14.45 8.64 -34.44 -0.30 -14.75 16 15 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 16 C 0.07 1.91 5.21 -17.82 -0.09 1.82 16 17 N -0.89 -23.86 11.82 55.43 0.66 -23.20 16 18 Si 0.90 20.29 29.55 -169.99 -5.02 15.27 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.00 0.06 7.12 -7.56 -0.05 0.01 16 23 C -0.11 -1.73 9.13 -39.58 -0.36 -2.09 16 24 C -0.12 -1.73 8.98 -39.58 -0.36 -2.08 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 28 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.55 7.51 -51.93 -0.39 0.16 16 31 H 0.06 0.56 7.39 -51.93 -0.38 0.17 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.12 1.31 7.10 -52.48 -0.37 0.94 16 35 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 37 H 0.04 0.76 7.50 -51.92 -0.39 0.38 16 38 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.06 1.33 7.32 -51.93 -0.38 0.95 16 40 H 0.38 10.33 7.10 45.56 0.32 10.66 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.06 1.32 7.72 -51.93 -0.40 0.92 16 43 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.12 1.93 7.72 -52.48 -0.41 1.52 16 45 H 0.12 1.52 5.90 -52.48 -0.31 1.21 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -28.05 356.73 -10.26 -38.31 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.83 Total: 12.37 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -2.38 Total: -20.84 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: -0.92 Total: -34.78 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.48 Total: -15.71 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.05 -10.26 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189540706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.159 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds