Wall clock time and date at job start Tue Mar 31 2020 06:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47294 * 2 1 4 4 C 1.53003 * 109.47654 * 240.00010 * 2 1 3 5 5 C 1.50699 * 109.47094 * 119.99883 * 2 1 3 6 6 C 1.38235 * 120.00231 * 59.99967 * 5 2 1 7 7 C 1.38237 * 120.00387 * 179.97438 * 6 5 2 8 8 C 1.38240 * 119.99773 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.99620 * 180.02562 * 8 7 6 10 10 N 1.46894 * 109.47601 * 90.00098 * 9 8 7 11 11 C 1.47473 * 111.00442 * 74.02491 * 10 9 8 12 12 C 1.53509 * 87.93540 * 138.70432 * 11 10 9 13 13 O 1.42899 * 114.34282 * 87.63531 * 12 11 10 14 14 C 1.50699 * 114.17310 * 220.32829 * 12 11 10 15 15 H 1.08001 * 120.00161 * 99.31565 * 14 12 11 16 16 C 1.37875 * 120.00037 * 279.31804 * 14 12 11 17 17 N 1.31514 * 119.99970 * 10.18243 * 16 14 12 18 18 Si 1.86801 * 120.00030 * 190.18126 * 16 14 12 19 19 H 1.48497 * 109.47311 * 84.99588 * 18 16 14 20 20 H 1.48504 * 109.46917 * 204.99657 * 18 16 14 21 21 H 1.48501 * 109.47151 * 324.99449 * 18 16 14 22 22 C 1.47481 * 111.00464 * 169.99866 * 10 9 8 23 23 C 1.38233 * 119.99927 * 0.27003 * 8 7 6 24 24 C 1.38237 * 119.99932 * 239.98023 * 5 2 1 25 25 H 1.08998 * 109.47702 * 300.00278 * 1 2 3 26 26 H 1.09005 * 109.47085 * 60.00338 * 1 2 3 27 27 H 1.08996 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47011 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46836 * 299.99919 * 3 2 1 30 30 H 1.09002 * 109.46758 * 59.99707 * 3 2 1 31 31 H 1.09006 * 109.46844 * 300.00390 * 4 2 1 32 32 H 1.08995 * 109.47074 * 59.99715 * 4 2 1 33 33 H 1.08996 * 109.47441 * 180.02562 * 4 2 1 34 34 H 1.08005 * 119.99697 * 359.97438 * 6 5 2 35 35 H 1.07990 * 119.99880 * 180.02562 * 7 6 5 36 36 H 1.08997 * 109.47234 * 329.99464 * 9 8 7 37 37 H 1.09008 * 109.46516 * 209.99967 * 9 8 7 38 38 H 1.09004 * 113.47467 * 253.47622 * 11 10 9 39 39 H 1.09001 * 113.47605 * 23.93574 * 11 10 9 40 40 H 0.96709 * 114.00164 * 90.08056 * 13 12 11 41 41 H 0.97003 * 119.99966 * 179.97438 * 17 16 14 42 42 H 1.09002 * 113.47125 * 336.06139 * 22 10 9 43 43 H 1.08996 * 113.47788 * 106.46579 * 22 10 9 44 44 H 1.08003 * 120.00211 * 179.72811 * 23 8 7 45 45 H 1.08003 * 120.00336 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0322 -0.7104 1.2305 6 6 1.6983 -2.0338 1.4493 7 6 2.1595 -2.6856 2.5777 8 6 2.9551 -2.0141 3.4871 9 6 3.4584 -2.7249 4.7170 10 7 4.7520 -3.3557 4.4232 11 6 5.8258 -2.3478 4.3445 12 6 6.7237 -3.3252 5.1159 13 8 7.4307 -4.2526 4.2901 14 6 7.5949 -2.6719 6.1576 15 1 7.2992 -2.6881 7.1963 16 6 8.7694 -2.0535 5.7848 17 7 9.0333 -1.8561 4.5117 18 14 9.9859 -1.4959 7.0882 19 1 10.8680 -2.6311 7.4600 20 1 10.8104 -0.3832 6.5520 21 1 9.2463 -1.0299 8.2886 22 6 5.3884 -3.8559 5.6560 23 6 3.2849 -0.6892 3.2709 24 6 2.8273 -0.0387 2.1402 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 1.0770 -2.5586 0.7386 35 1 1.8989 -3.7196 2.7484 36 1 2.7405 -3.4893 5.0141 37 1 3.5803 -2.0062 5.5275 38 1 6.1669 -2.1553 3.3273 39 1 5.6047 -1.4339 4.8957 40 1 8.2989 -3.9395 4.0011 41 1 9.8595 -1.4207 4.2494 42 1 5.0505 -3.3443 6.5573 43 1 5.3578 -4.9412 5.7509 44 1 3.9029 -0.1632 3.9836 45 1 3.0889 0.9951 1.9689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189540706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:56 Heat of formation + Delta-G solvation = -20.744059 kcal Electronic energy + Delta-G solvation = -23174.797045 eV Core-core repulsion = 19963.886127 eV Total energy + Delta-G solvation = -3210.910917 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30512 -40.43699 -37.54265 -36.12347 -34.20632 -32.47626 -31.99927 -29.39118 -28.23286 -28.07235 -27.35733 -26.63874 -24.44032 -23.22997 -22.31705 -20.53581 -20.05018 -19.23472 -17.48941 -17.09076 -16.80471 -16.48128 -16.00755 -15.87309 -15.56981 -15.18770 -15.11841 -14.56998 -14.36446 -14.22566 -13.99754 -13.90014 -13.57589 -13.49904 -13.09117 -12.87366 -12.81056 -12.72450 -12.56397 -12.52622 -12.30331 -12.23021 -12.15300 -11.85886 -11.80872 -11.40756 -11.33214 -11.04494 -10.77657 -10.10782 -9.78573 -9.70002 -9.35873 -8.25839 -6.42512 0.44090 0.54181 1.41359 1.44224 1.52693 2.36743 2.80399 2.95038 3.35790 3.65602 3.81016 3.83454 3.95480 4.12331 4.14105 4.16499 4.22515 4.37068 4.40581 4.44441 4.54818 4.58242 4.68464 4.71124 4.80843 4.84498 4.89248 4.91374 5.02370 5.04376 5.06438 5.17261 5.18860 5.20207 5.25348 5.37662 5.38499 5.43419 5.46921 5.62278 5.70236 5.75878 5.78279 5.94846 6.14842 6.31924 6.62206 7.29701 7.36071 8.79043 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.003641 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.932788 B = 7688.252805 C = 8223.449351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.077 4.077 6 C -0.119 4.119 7 C -0.110 4.110 8 C -0.090 4.090 9 C 0.057 3.943 10 N -0.470 5.470 11 C 0.013 3.987 12 C 0.219 3.781 13 O -0.575 6.575 14 C -0.565 4.565 15 H 0.065 0.935 16 C 0.031 3.969 17 N -0.910 5.910 18 Si 0.963 3.037 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.268 1.268 22 C 0.012 3.988 23 C -0.125 4.125 24 C -0.129 4.129 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.052 0.948 40 H 0.377 0.623 41 H 0.271 0.729 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.107 0.893 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.994 5.170 -7.862 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.077 4.077 6 C -0.137 4.137 7 C -0.128 4.128 8 C -0.090 4.090 9 C -0.071 4.071 10 N -0.193 5.193 11 C -0.117 4.117 12 C 0.178 3.822 13 O -0.383 6.383 14 C -0.603 4.603 15 H 0.084 0.916 16 C -0.170 4.170 17 N -0.549 5.549 18 Si 0.788 3.212 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.116 4.116 23 C -0.143 4.143 24 C -0.146 4.146 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.110 0.890 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.226 0.774 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.125 0.875 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.589 4.434 -8.448 19.137 hybrid contribution 1.621 1.189 1.335 2.413 sum -14.969 5.623 -7.113 17.501 Atomic orbital electron populations 1.21854 0.92504 1.02404 1.02301 1.19548 0.96527 0.95096 0.91689 1.21965 1.00822 0.94758 1.02589 1.21890 1.00531 1.00535 0.96528 1.20087 0.97144 0.94256 0.96227 1.21148 1.00680 0.94481 0.97343 1.21151 0.97473 0.99898 0.94283 1.19769 0.98152 0.93994 0.97101 1.21647 0.93565 0.97624 0.94272 1.68971 1.00314 1.22423 1.27560 1.24158 0.93114 0.95146 0.99242 1.19713 0.88369 0.86208 0.87897 1.86062 1.35442 1.45918 1.70830 1.21745 1.07392 1.36640 0.94476 0.91638 1.25791 0.99370 0.94269 0.97591 1.69894 1.25852 1.42478 1.16675 0.85506 0.78693 0.77847 0.79200 1.19857 1.20715 1.19266 1.23999 0.94120 1.00829 0.92681 1.21157 0.99762 0.94818 0.98593 1.21298 0.98550 1.00784 0.94017 0.92969 0.90846 0.92166 0.93156 0.90832 0.92268 0.92231 0.90664 0.93907 0.84230 0.85342 0.88955 0.93862 0.94256 0.92956 0.77402 0.91935 0.90369 0.90720 0.87469 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.29 71.98 0.60 -1.42 16 2 C -0.03 -0.53 0.85 -52.93 -0.05 -0.58 16 3 C -0.14 -2.48 7.13 71.98 0.51 -1.97 16 4 C -0.14 -2.43 8.29 71.98 0.60 -1.84 16 5 C -0.08 -1.92 4.76 -19.87 -0.09 -2.01 16 6 C -0.12 -3.00 8.71 22.27 0.19 -2.81 16 7 C -0.11 -3.21 9.70 22.27 0.22 -3.00 16 8 C -0.09 -3.00 5.18 -19.87 -0.10 -3.10 16 9 C 0.06 1.99 4.98 85.56 0.43 2.42 16 10 N -0.47 -20.23 6.40 -932.97 -5.97 -26.20 16 11 C 0.01 0.63 6.26 83.57 0.52 1.16 16 12 C 0.22 11.34 1.40 -11.20 -0.02 11.33 16 13 O -0.58 -31.73 13.57 -148.98 -2.02 -33.76 16 14 C -0.56 -30.36 8.64 25.60 0.22 -30.14 16 15 H 0.07 3.43 7.83 -2.91 -0.02 3.41 16 16 C 0.03 1.64 5.21 84.65 0.44 2.08 16 17 N -0.91 -49.68 11.82 21.45 0.25 -49.43 16 18 Si 0.96 41.59 29.55 68.60 2.03 43.62 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 C 0.01 0.54 7.12 83.57 0.60 1.14 16 23 C -0.12 -4.10 9.13 22.27 0.20 -3.90 16 24 C -0.13 -3.64 8.98 22.27 0.20 -3.44 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.06 0.87 7.39 -2.39 -0.02 0.85 16 28 H 0.05 0.96 7.51 -2.39 -0.02 0.95 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.00 7.51 -2.39 -0.02 0.98 16 31 H 0.06 1.01 7.39 -2.38 -0.02 1.00 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.14 2.80 7.10 -2.91 -0.02 2.78 16 35 H 0.13 3.42 8.06 -2.92 -0.02 3.40 16 36 H 0.09 2.85 8.09 -2.39 -0.02 2.83 16 37 H 0.04 1.51 7.50 -2.38 -0.02 1.49 16 38 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.05 2.55 7.32 -2.39 -0.02 2.53 16 40 H 0.38 21.05 7.10 -74.05 -0.53 20.52 16 41 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.08 3.18 7.72 -2.39 -0.02 3.17 16 43 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.11 3.65 7.72 -2.91 -0.02 3.63 16 45 H 0.13 3.33 5.90 -2.91 -0.02 3.31 16 Total: -1.00 -59.85 356.73 -0.81 -60.66 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: 0.44 Total: 41.19 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 4.47 Total: -36.08 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -5.72 Total: -75.63 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -2.02 Total: -33.76 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -59.85 -0.81 -60.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189540706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.918 kcal (2) G-P(sol) polarization free energy of solvation -59.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds