Wall clock time and date at job start Tue Mar 31 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47316 * 2 1 4 4 C 1.53004 * 109.46902 * 301.25507 * 3 2 1 5 5 C 1.52996 * 109.46765 * 294.72823 * 4 3 2 6 6 C 1.50710 * 109.46863 * 61.24907 * 3 2 1 7 7 O 1.21278 * 119.99961 * 239.99914 * 6 3 2 8 8 N 1.34772 * 119.99692 * 60.28052 * 6 3 2 9 9 C 1.46501 * 119.99932 * 179.71950 * 8 6 3 10 10 H 1.08993 * 109.46838 * 35.00173 * 9 8 6 11 11 C 1.53006 * 109.47115 * 154.99874 * 9 8 6 12 12 C 1.50701 * 109.47022 * 295.00116 * 11 9 8 13 13 H 1.07998 * 119.99941 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99862 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99946 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00014 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46936 * 90.00521 * 16 14 12 18 18 H 1.48501 * 109.47403 * 210.00309 * 16 14 12 19 19 H 1.48499 * 109.47181 * 330.00599 * 16 14 12 20 20 C 1.50699 * 109.47287 * 274.99902 * 9 8 6 21 21 C 1.38231 * 120.00108 * 319.72886 * 20 9 8 22 22 C 1.38238 * 120.00015 * 179.78635 * 21 20 9 23 23 C 1.38234 * 119.99670 * 0.44019 * 22 21 20 24 24 C 1.38233 * 120.00199 * 359.81311 * 23 22 21 25 25 C 1.38230 * 120.00138 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47437 * 305.91886 * 1 2 3 27 27 H 1.08999 * 109.47357 * 65.92547 * 1 2 3 28 28 H 1.09005 * 109.47310 * 185.92004 * 1 2 3 29 29 H 1.08995 * 109.46906 * 239.99759 * 2 1 3 30 30 H 1.08998 * 109.46972 * 120.00244 * 2 1 3 31 31 H 1.09002 * 109.47452 * 181.25128 * 3 2 1 32 32 H 1.09001 * 109.47332 * 54.72989 * 4 3 2 33 33 H 1.09003 * 109.47081 * 174.72886 * 4 3 2 34 34 H 1.09011 * 109.46895 * 180.41590 * 5 4 3 35 35 H 1.09001 * 109.47693 * 300.41536 * 5 4 3 36 36 H 1.08994 * 109.47207 * 60.42174 * 5 4 3 37 37 H 0.97003 * 119.99922 * 359.72211 * 8 6 3 38 38 H 1.09003 * 109.46970 * 54.99949 * 11 9 8 39 39 H 1.08994 * 109.46793 * 175.00156 * 11 9 8 40 40 H 0.97000 * 120.00165 * 179.97438 * 15 14 12 41 41 H 1.08003 * 119.99812 * 359.97438 * 21 20 9 42 42 H 1.08002 * 120.00177 * 180.27020 * 22 21 20 43 43 H 1.08007 * 119.99675 * 179.82967 * 23 22 21 44 44 H 1.08001 * 119.99754 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00508 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5044 2.1727 -1.2332 5 6 2.0938 1.5411 -2.4959 6 6 1.5631 2.1438 1.2458 7 8 0.8638 3.1306 1.1560 8 7 1.9184 1.6777 2.4594 9 6 1.4599 2.3631 3.6703 10 1 0.4566 2.7564 3.5072 11 6 1.4367 1.3747 4.8380 12 6 0.4083 0.3060 4.5711 13 1 -0.1705 0.3292 3.6596 14 6 0.2071 -0.7020 5.4901 15 7 0.9123 -0.7305 6.5998 16 14 -1.0672 -2.0271 5.1590 17 1 -0.4309 -3.1552 4.4325 18 1 -1.6186 -2.5168 6.4479 19 1 -2.1649 -1.4630 4.3333 20 6 2.3983 3.4978 3.9912 21 6 3.7621 3.3310 3.8389 22 6 4.6225 4.3732 4.1290 23 6 4.1198 5.5793 4.5802 24 6 2.7564 5.7444 4.7374 25 6 1.8957 4.7036 4.4431 26 1 -0.3634 0.6028 0.8322 27 1 -0.3634 0.4192 -0.9382 28 1 -0.3634 -1.0222 0.1060 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.1298 1.4425 -0.0224 32 1 0.4177 2.0920 -1.2598 33 1 1.7896 3.2237 -1.1855 34 1 1.7180 2.0662 -3.3742 35 1 3.1809 1.6152 -2.4659 36 1 1.8025 0.4921 -2.5474 37 1 2.4778 0.8885 2.5311 38 1 2.4193 0.9149 4.9444 39 1 1.1815 1.9033 5.7563 40 1 0.7705 -1.4394 7.2465 41 1 4.1550 2.3873 3.4903 42 1 5.6878 4.2443 4.0059 43 1 4.7923 6.3928 4.8095 44 1 2.3638 6.6866 5.0903 45 1 0.8304 4.8327 4.5656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193144607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:54 Heat of formation + Delta-G solvation = -45.833361 kcal Electronic energy + Delta-G solvation = -23683.126948 eV Core-core repulsion = 20471.128077 eV Total energy + Delta-G solvation = -3211.998871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.87396 -38.63918 -35.99640 -35.00271 -32.72784 -31.41562 -30.72817 -30.40486 -28.83549 -27.18272 -24.82915 -23.33188 -22.30016 -21.97053 -21.44478 -19.78625 -18.84959 -16.92502 -16.40340 -16.16054 -15.63874 -15.62385 -14.81503 -14.59206 -14.49466 -14.02918 -13.48065 -13.17801 -13.15245 -12.95725 -12.78957 -12.52450 -12.41957 -12.10426 -11.90190 -11.72664 -11.44604 -11.25432 -11.13886 -10.95733 -10.89070 -10.72343 -10.59863 -10.44742 -10.42214 -10.33303 -9.76537 -9.31618 -9.13720 -8.53134 -8.45235 -8.35066 -8.16106 -6.08887 -4.12000 1.79779 1.81741 3.21671 3.26060 3.33837 3.37637 3.80593 4.26032 4.39780 4.85910 4.98372 5.05721 5.27466 5.27758 5.28640 5.35051 5.37345 5.42217 5.48169 5.54994 5.63719 5.80207 5.85881 5.89715 5.92490 5.95797 6.01309 6.16628 6.23245 6.27104 6.33889 6.37928 6.42145 6.46383 6.60439 6.60863 6.86080 6.86837 6.97844 7.13977 7.42157 7.50471 7.64668 7.88131 8.20439 8.27450 8.85881 8.93949 9.52862 11.01716 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.008723 B = 0.007684 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.125161 B = 3642.914638 C = 6295.518750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.108 4.108 4 C -0.106 4.106 5 C -0.152 4.152 6 C 0.516 3.484 7 O -0.552 6.552 8 N -0.700 5.700 9 C 0.184 3.816 10 H 0.085 0.915 11 C 0.024 3.976 12 C -0.517 4.517 13 H 0.058 0.942 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.070 4.070 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.109 4.109 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.399 0.601 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.992 5.199 -11.255 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.130 4.130 4 C -0.144 4.144 5 C -0.209 4.209 6 C 0.302 3.698 7 O -0.430 6.430 8 N -0.349 5.349 9 C 0.079 3.921 10 H 0.103 0.897 11 C -0.013 4.013 12 C -0.556 4.556 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.071 4.071 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.127 4.127 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.234 0.766 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.503 5.793 -11.133 13.703 hybrid contribution -0.337 -1.195 0.121 1.248 sum 5.166 4.598 -11.012 13.003 Atomic orbital electron populations 1.21838 0.95377 1.01897 1.02155 1.21521 0.96908 0.94201 1.02654 1.21412 1.01383 0.96420 0.93769 1.21353 1.01393 0.99443 0.92179 1.21832 1.00671 1.00964 0.97458 1.20484 0.80124 0.84244 0.84919 1.90640 1.38374 1.26836 1.87182 1.45988 1.52739 1.31050 1.05145 1.20217 0.95079 0.90747 0.86019 0.89677 1.19385 0.97977 0.92643 0.91320 1.21127 1.20540 1.08953 1.04945 0.92348 1.24979 0.96098 0.97995 0.95045 1.69959 1.40535 1.33389 1.09224 0.86624 0.81937 0.82026 0.77644 1.20670 1.21256 1.19836 1.20575 0.94720 0.95351 0.96481 1.20905 0.93009 0.98555 1.00178 1.21039 0.99139 0.93723 1.00440 1.20988 0.95326 0.97466 1.01599 1.21037 0.93584 0.98656 1.00808 1.21021 0.99810 0.92698 0.99184 0.91977 0.92711 0.92694 0.91228 0.90994 0.89204 0.91003 0.91513 0.92861 0.92951 0.92493 0.76606 0.95811 0.94891 0.92904 0.86599 0.86770 0.86872 0.86643 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.22 37.16 0.34 -1.84 16 2 C -0.12 -1.45 5.36 -26.73 -0.14 -1.59 16 3 C -0.11 -1.45 2.50 -91.77 -0.23 -1.68 16 4 C -0.11 -1.34 4.52 -26.73 -0.12 -1.47 16 5 C -0.15 -1.49 9.66 37.16 0.36 -1.13 16 6 C 0.52 9.03 5.81 -10.98 -0.06 8.97 16 7 O -0.55 -11.56 15.58 5.56 0.09 -11.47 16 8 N -0.70 -12.54 3.93 -54.93 -0.22 -12.76 16 9 C 0.18 3.75 2.11 -69.08 -0.15 3.61 16 10 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 11 C 0.02 0.58 4.49 -27.88 -0.13 0.45 16 12 C -0.52 -13.56 8.84 -34.44 -0.30 -13.86 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 16 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 20 C -0.07 -1.32 4.91 -104.62 -0.51 -1.83 16 21 C -0.11 -1.84 9.32 -39.58 -0.37 -2.21 16 22 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 23 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 24 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 25 C -0.11 -1.92 9.67 -39.58 -0.38 -2.31 16 26 H 0.06 1.06 7.06 -51.93 -0.37 0.70 16 27 H 0.05 0.69 6.62 -51.93 -0.34 0.35 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.72 6.64 -51.93 -0.34 0.38 16 30 H 0.07 0.94 7.54 -51.93 -0.39 0.55 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.99 6.26 -51.93 -0.33 0.66 16 33 H 0.07 0.92 7.95 -51.93 -0.41 0.51 16 34 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.52 6.62 -51.93 -0.34 0.18 16 37 H 0.40 6.62 8.01 -40.82 -0.33 6.29 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.12 1.84 7.73 -52.48 -0.41 1.43 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 44 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -30.30 364.66 -9.32 -39.62 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.42 Total: 8.22 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.99 Total: -20.25 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.52 Total: -37.52 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.30 -9.32 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193144607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.212 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds