Wall clock time and date at job start Tue Mar 31 2020 06:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47316 * 2 1 4 4 C 1.53004 * 109.46902 * 301.25507 * 3 2 1 5 5 C 1.52996 * 109.46765 * 294.72823 * 4 3 2 6 6 C 1.50710 * 109.46863 * 61.24907 * 3 2 1 7 7 O 1.21278 * 119.99961 * 239.99914 * 6 3 2 8 8 N 1.34772 * 119.99692 * 60.28052 * 6 3 2 9 9 C 1.46501 * 119.99932 * 179.71950 * 8 6 3 10 10 H 1.08993 * 109.46838 * 35.00173 * 9 8 6 11 11 C 1.53006 * 109.47115 * 154.99874 * 9 8 6 12 12 C 1.50701 * 109.47022 * 295.00116 * 11 9 8 13 13 H 1.07998 * 119.99941 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99862 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99946 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00014 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46936 * 90.00521 * 16 14 12 18 18 H 1.48501 * 109.47403 * 210.00309 * 16 14 12 19 19 H 1.48499 * 109.47181 * 330.00599 * 16 14 12 20 20 C 1.50699 * 109.47287 * 274.99902 * 9 8 6 21 21 C 1.38231 * 120.00108 * 319.72886 * 20 9 8 22 22 C 1.38238 * 120.00015 * 179.78635 * 21 20 9 23 23 C 1.38234 * 119.99670 * 0.44019 * 22 21 20 24 24 C 1.38233 * 120.00199 * 359.81311 * 23 22 21 25 25 C 1.38230 * 120.00138 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47437 * 305.91886 * 1 2 3 27 27 H 1.08999 * 109.47357 * 65.92547 * 1 2 3 28 28 H 1.09005 * 109.47310 * 185.92004 * 1 2 3 29 29 H 1.08995 * 109.46906 * 239.99759 * 2 1 3 30 30 H 1.08998 * 109.46972 * 120.00244 * 2 1 3 31 31 H 1.09002 * 109.47452 * 181.25128 * 3 2 1 32 32 H 1.09001 * 109.47332 * 54.72989 * 4 3 2 33 33 H 1.09003 * 109.47081 * 174.72886 * 4 3 2 34 34 H 1.09011 * 109.46895 * 180.41590 * 5 4 3 35 35 H 1.09001 * 109.47693 * 300.41536 * 5 4 3 36 36 H 1.08994 * 109.47207 * 60.42174 * 5 4 3 37 37 H 0.97003 * 119.99922 * 359.72211 * 8 6 3 38 38 H 1.09003 * 109.46970 * 54.99949 * 11 9 8 39 39 H 1.08994 * 109.46793 * 175.00156 * 11 9 8 40 40 H 0.97000 * 120.00165 * 179.97438 * 15 14 12 41 41 H 1.08003 * 119.99812 * 359.97438 * 21 20 9 42 42 H 1.08002 * 120.00177 * 180.27020 * 22 21 20 43 43 H 1.08007 * 119.99675 * 179.82967 * 23 22 21 44 44 H 1.08001 * 119.99754 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00508 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5044 2.1727 -1.2332 5 6 2.0938 1.5411 -2.4959 6 6 1.5631 2.1438 1.2458 7 8 0.8638 3.1306 1.1560 8 7 1.9184 1.6777 2.4594 9 6 1.4599 2.3631 3.6703 10 1 0.4566 2.7564 3.5072 11 6 1.4367 1.3747 4.8380 12 6 0.4083 0.3060 4.5711 13 1 -0.1705 0.3292 3.6596 14 6 0.2071 -0.7020 5.4901 15 7 0.9123 -0.7305 6.5998 16 14 -1.0672 -2.0271 5.1590 17 1 -0.4309 -3.1552 4.4325 18 1 -1.6186 -2.5168 6.4479 19 1 -2.1649 -1.4630 4.3333 20 6 2.3983 3.4978 3.9912 21 6 3.7621 3.3310 3.8389 22 6 4.6225 4.3732 4.1290 23 6 4.1198 5.5793 4.5802 24 6 2.7564 5.7444 4.7374 25 6 1.8957 4.7036 4.4431 26 1 -0.3634 0.6028 0.8322 27 1 -0.3634 0.4192 -0.9382 28 1 -0.3634 -1.0222 0.1060 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.1298 1.4425 -0.0224 32 1 0.4177 2.0920 -1.2598 33 1 1.7896 3.2237 -1.1855 34 1 1.7180 2.0662 -3.3742 35 1 3.1809 1.6152 -2.4659 36 1 1.8025 0.4921 -2.5474 37 1 2.4778 0.8885 2.5311 38 1 2.4193 0.9149 4.9444 39 1 1.1815 1.9033 5.7563 40 1 0.7705 -1.4394 7.2465 41 1 4.1550 2.3873 3.4903 42 1 5.6878 4.2443 4.0059 43 1 4.7923 6.3928 4.8095 44 1 2.3638 6.6866 5.0903 45 1 0.8304 4.8327 4.5656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193144607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:53 Heat of formation + Delta-G solvation = -61.720350 kcal Electronic energy + Delta-G solvation = -23683.815860 eV Core-core repulsion = 20471.128077 eV Total energy + Delta-G solvation = -3212.687783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28208 -39.92448 -37.25380 -36.54828 -34.71669 -32.68526 -31.89298 -31.65854 -30.55892 -28.38203 -26.57271 -24.35028 -23.80777 -23.46091 -22.70971 -21.25983 -20.11237 -18.66652 -17.85113 -17.65943 -17.09955 -16.75943 -16.47942 -16.11332 -15.77925 -15.27946 -14.87765 -14.61370 -14.26631 -14.20475 -14.18780 -13.85997 -13.73449 -13.68267 -13.46433 -12.93672 -12.89547 -12.67521 -12.53901 -12.48710 -12.27499 -12.14505 -12.00007 -11.86071 -11.59993 -11.45265 -11.36340 -11.32080 -10.67854 -10.51302 -9.92291 -9.76119 -9.52164 -8.20431 -6.30187 0.50686 0.55047 1.37692 1.39924 1.49991 1.81808 2.39231 2.41409 2.97337 3.13885 3.78107 3.85978 3.96201 4.01381 4.02993 4.20235 4.31237 4.33418 4.38681 4.46068 4.52522 4.64097 4.65663 4.76266 4.78020 4.80301 4.86326 4.97385 5.06008 5.12109 5.19265 5.24303 5.26649 5.29107 5.33277 5.38419 5.43495 5.59114 5.60723 5.62446 5.64036 5.77967 5.92392 6.15791 6.20452 6.77228 6.82215 7.38315 7.43953 8.90400 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.008723 B = 0.007684 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.125161 B = 3642.914638 C = 6295.518750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.100 4.100 4 C -0.103 4.103 5 C -0.145 4.145 6 C 0.512 3.488 7 O -0.592 6.592 8 N -0.696 5.696 9 C 0.200 3.800 10 H 0.052 0.948 11 C 0.039 3.961 12 C -0.525 4.525 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.953 3.047 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.098 4.098 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.135 4.135 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.406 0.594 38 H 0.012 0.988 39 H 0.000 1.000 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.143 0.857 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.824 4.891 -12.932 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.121 4.121 4 C -0.141 4.141 5 C -0.202 4.202 6 C 0.301 3.699 7 O -0.473 6.473 8 N -0.345 5.345 9 C 0.095 3.905 10 H 0.070 0.930 11 C 0.002 3.998 12 C -0.563 4.563 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.779 3.221 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.099 4.099 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.154 4.154 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.242 0.758 38 H 0.030 0.970 39 H 0.018 0.982 40 H 0.072 0.928 41 H 0.140 0.860 42 H 0.166 0.834 43 H 0.170 0.830 44 H 0.161 0.839 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.347 5.471 -12.825 15.760 hybrid contribution -0.903 -1.006 0.676 1.511 sum 6.445 4.465 -12.149 14.459 Atomic orbital electron populations 1.21836 0.96773 1.01522 1.01124 1.21547 0.95577 0.93629 1.04075 1.21471 1.02839 0.96401 0.91392 1.21325 1.00591 0.98787 0.93419 1.21788 1.01305 1.01339 0.95750 1.21313 0.79116 0.83771 0.85738 1.90615 1.40161 1.28814 1.87713 1.45897 1.52700 1.31171 1.04773 1.19670 0.94457 0.90675 0.85731 0.92999 1.19119 0.96583 0.92592 0.91541 1.21358 1.20765 1.09501 1.04676 0.92905 1.25753 0.97960 1.00174 0.94778 1.70071 1.42096 1.34315 1.10115 0.85623 0.79426 0.79556 0.77528 1.19183 1.21025 1.19824 1.20477 0.95435 0.95202 0.98819 1.21074 0.92400 0.99794 1.00678 1.21452 1.00547 0.93109 0.99026 1.21473 0.95323 0.98264 0.99668 1.21378 0.94043 0.98828 0.99905 1.21168 1.00074 0.93629 1.00531 0.96024 0.91420 0.92018 0.87713 0.91558 0.86527 0.92625 0.93163 0.92036 0.91641 0.91339 0.75799 0.96965 0.98160 0.92754 0.86033 0.83432 0.83039 0.83925 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 9.22 71.98 0.66 -3.63 16 2 C -0.11 -2.58 5.36 30.59 0.16 -2.41 16 3 C -0.10 -2.55 2.50 -11.54 -0.03 -2.58 16 4 C -0.10 -2.51 4.52 30.59 0.14 -2.37 16 5 C -0.14 -2.39 9.66 71.98 0.70 -1.70 16 6 C 0.51 18.43 5.81 87.66 0.51 18.94 16 7 O -0.59 -26.07 15.58 -3.02 -0.05 -26.12 16 8 N -0.70 -25.95 3.93 -446.09 -1.75 -27.70 16 9 C 0.20 8.72 2.11 44.25 0.09 8.82 16 10 H 0.05 2.57 7.44 -2.39 -0.02 2.55 16 11 C 0.04 1.99 4.49 29.85 0.13 2.12 16 12 C -0.52 -28.62 8.84 25.60 0.23 -28.40 16 13 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 14 C 0.01 0.66 5.46 84.65 0.46 1.12 16 15 N -0.93 -54.17 13.29 21.45 0.28 -53.89 16 16 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 C -0.10 -3.85 4.91 -19.87 -0.10 -3.94 16 21 C -0.12 -4.09 9.32 22.27 0.21 -3.88 16 22 C -0.12 -3.41 10.05 22.27 0.22 -3.19 16 23 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 24 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 25 C -0.14 -5.00 9.67 22.27 0.22 -4.78 16 26 H 0.02 0.75 7.06 -2.39 -0.02 0.73 16 27 H 0.07 1.66 6.62 -2.39 -0.02 1.64 16 28 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.10 1.77 6.64 -2.39 -0.02 1.75 16 30 H 0.07 1.64 7.54 -2.39 -0.02 1.62 16 31 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.06 1.52 6.26 -2.39 -0.01 1.50 16 33 H 0.05 1.38 7.95 -2.39 -0.02 1.36 16 34 H 0.06 0.93 8.14 -2.38 -0.02 0.92 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.99 6.62 -2.39 -0.02 0.97 16 37 H 0.41 13.79 8.01 -92.71 -0.74 13.04 16 38 H 0.01 0.63 8.14 -2.39 -0.02 0.62 16 39 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.12 3.82 7.73 -2.91 -0.02 3.80 16 42 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 45 H 0.11 4.07 8.04 -2.91 -0.02 4.05 16 Total: -1.00 -68.86 364.66 4.78 -64.07 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.22 Total: 30.59 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.05 Total: -32.45 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.47 Total: -81.59 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.12 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.86 4.78 -64.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193144607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.354 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds