Wall clock time and date at job start Tue Mar 31 2020 06:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47111 * 2 1 4 4 C 1.53005 * 109.47002 * 300.42580 * 3 2 1 5 5 C 1.52998 * 109.47035 * 294.87319 * 4 3 2 6 6 C 1.50698 * 109.47444 * 60.42462 * 3 2 1 7 7 O 1.21276 * 120.00380 * 239.99953 * 6 3 2 8 8 N 1.34782 * 119.99645 * 60.00229 * 6 3 2 9 9 C 1.46501 * 119.99787 * 180.02562 * 8 6 3 10 10 H 1.09001 * 109.47210 * 324.99824 * 9 8 6 11 11 C 1.52997 * 109.46747 * 204.99921 * 9 8 6 12 12 C 1.50695 * 109.47427 * 65.00296 * 11 9 8 13 13 H 1.07998 * 119.99973 * 359.97438 * 12 11 9 14 14 C 1.37884 * 120.00436 * 179.72625 * 12 11 9 15 15 N 1.31514 * 119.99471 * 0.27035 * 14 12 11 16 16 Si 1.86794 * 120.00346 * 180.27168 * 14 12 11 17 17 H 1.48502 * 109.46953 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47237 * 119.99438 * 16 14 12 19 19 H 1.48494 * 109.47217 * 239.99862 * 16 14 12 20 20 C 1.50694 * 109.47061 * 85.00075 * 9 8 6 21 21 C 1.38241 * 120.00433 * 39.72527 * 20 9 8 22 22 C 1.38229 * 119.99839 * 179.79032 * 21 20 9 23 23 C 1.38230 * 120.00341 * 0.43554 * 22 21 20 24 24 C 1.38239 * 120.00085 * 359.81743 * 23 22 21 25 25 C 1.38230 * 119.99567 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47475 * 66.47653 * 1 2 3 27 27 H 1.09005 * 109.47407 * 186.47476 * 1 2 3 28 28 H 1.09002 * 109.47173 * 306.47824 * 1 2 3 29 29 H 1.08992 * 109.46870 * 239.99530 * 2 1 3 30 30 H 1.09008 * 109.46898 * 119.99926 * 2 1 3 31 31 H 1.09002 * 109.46788 * 180.42994 * 3 2 1 32 32 H 1.08998 * 109.46888 * 54.87318 * 4 3 2 33 33 H 1.08999 * 109.46973 * 174.87162 * 4 3 2 34 34 H 1.09002 * 109.47298 * 305.77640 * 5 4 3 35 35 H 1.09004 * 109.46892 * 65.78177 * 5 4 3 36 36 H 1.09003 * 109.47027 * 185.77466 * 5 4 3 37 37 H 0.97001 * 120.00223 * 0.02562 * 8 6 3 38 38 H 1.09002 * 109.47251 * 304.99783 * 11 9 8 39 39 H 1.09002 * 109.47039 * 185.00125 * 11 9 8 40 40 H 0.96997 * 119.99830 * 180.02562 * 15 14 12 41 41 H 1.07998 * 119.99326 * 359.97438 * 21 20 9 42 42 H 1.08002 * 119.99577 * 180.27495 * 22 21 20 43 43 H 1.07997 * 120.00277 * 179.83391 * 23 22 21 44 44 H 1.07996 * 120.00160 * 179.97438 * 24 23 22 45 45 H 1.08011 * 119.99879 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5212 2.1668 -1.2439 5 6 2.1250 1.5269 -2.4956 6 6 1.5463 2.1499 1.2356 7 8 0.8483 3.1362 1.1317 8 7 1.8805 1.6864 2.4563 9 6 1.4002 2.3738 3.6576 10 1 1.3618 3.4471 3.4712 11 6 2.3524 2.0920 4.8215 12 6 3.6997 2.6992 4.5267 13 1 3.8608 3.2325 3.6014 14 6 4.7253 2.5785 5.4403 15 7 4.5291 1.9287 6.5668 16 14 6.3931 3.3377 5.0782 17 1 6.3541 4.0096 3.7545 18 1 6.7220 4.3342 6.1290 19 1 7.4287 2.2736 5.0636 20 6 0.0213 1.8745 4.0045 21 6 -0.2808 0.5318 3.8743 22 6 -1.5443 0.0733 4.1967 23 6 -2.5086 0.9587 4.6406 24 6 -2.2081 2.3022 4.7658 25 6 -0.9433 2.7601 4.4475 26 1 -0.3634 0.4102 -0.9422 27 1 -0.3634 -1.0211 0.1159 28 1 -0.3633 0.6110 0.8263 29 1 1.8932 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 3.1300 1.4424 -0.0077 32 1 0.4348 2.0880 -1.2835 33 1 1.8079 3.2174 -1.1986 34 1 3.2115 1.5134 -2.4088 35 1 1.7557 0.5062 -2.5960 36 1 1.8378 2.1052 -3.3739 37 1 2.4391 0.8978 2.5395 38 1 2.4596 1.0149 4.9506 39 1 1.9490 2.5290 5.7350 40 1 5.2504 1.8441 7.2098 41 1 0.4714 -0.1593 3.5236 42 1 -1.7789 -0.9764 4.0992 43 1 -3.4966 0.6008 4.8899 44 1 -2.9616 2.9940 5.1122 45 1 -0.7086 3.8099 4.5450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193144620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:56 Heat of formation + Delta-G solvation = -45.948649 kcal Electronic energy + Delta-G solvation = -23758.705038 eV Core-core repulsion = 20546.701168 eV Total energy + Delta-G solvation = -3212.003871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90126 -38.62130 -36.03158 -35.00453 -32.73766 -31.43889 -30.77237 -30.44045 -28.81326 -27.23174 -24.83445 -23.39338 -22.29347 -21.97933 -21.46399 -19.79095 -18.86890 -17.02028 -16.31117 -16.16924 -15.79410 -15.47128 -14.86862 -14.67545 -14.51587 -14.03027 -13.49733 -13.22770 -13.08657 -12.96094 -12.88344 -12.57436 -12.43329 -12.10954 -11.96860 -11.74104 -11.44266 -11.34315 -11.13053 -11.04388 -10.90894 -10.73088 -10.57810 -10.49262 -10.44806 -10.39690 -9.76870 -9.30805 -9.14032 -8.52959 -8.45587 -8.35323 -8.15721 -6.09457 -4.12652 1.79980 1.81990 3.21814 3.25624 3.34262 3.38577 3.80314 4.26063 4.39704 4.81237 4.93080 5.01815 5.26648 5.27352 5.28666 5.29917 5.34590 5.40093 5.40927 5.55459 5.60580 5.75812 5.77807 5.88091 5.92009 5.92754 5.95893 6.10149 6.15521 6.21742 6.28809 6.31562 6.37935 6.46144 6.52676 6.60660 6.86388 6.87079 6.97829 7.14203 7.42273 7.50253 7.64529 7.87663 8.20399 8.27149 8.85858 8.93606 9.52373 11.01145 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.009901 B = 0.006743 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.386147 B = 4151.428757 C = 6253.401589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.111 4.111 4 C -0.105 4.105 5 C -0.152 4.152 6 C 0.517 3.483 7 O -0.552 6.552 8 N -0.700 5.700 9 C 0.183 3.817 10 H 0.085 0.915 11 C 0.024 3.976 12 C -0.519 4.519 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.069 4.069 21 C -0.106 4.106 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.109 4.109 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.400 0.600 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 -5.364 -11.129 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.132 4.132 4 C -0.143 4.143 5 C -0.209 4.209 6 C 0.303 3.697 7 O -0.430 6.430 8 N -0.349 5.349 9 C 0.079 3.921 10 H 0.103 0.897 11 C -0.014 4.014 12 C -0.557 4.557 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.070 4.070 21 C -0.125 4.125 22 C -0.143 4.143 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.127 4.127 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.234 0.766 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.107 -4.702 -11.023 15.052 hybrid contribution 1.300 -0.014 0.124 1.306 sum -7.807 -4.717 -10.899 14.212 Atomic orbital electron populations 1.21852 0.95486 1.01503 1.02409 1.21504 0.96598 0.94521 1.02524 1.21433 1.01844 0.96067 0.93870 1.21346 1.01157 0.99681 0.92141 1.21828 1.00856 1.00686 0.97529 1.20463 0.80079 0.84361 0.84814 1.90640 1.38637 1.26739 1.87024 1.45987 1.52067 1.31747 1.05109 1.20217 0.89070 0.96618 0.86183 0.89681 1.19387 0.92740 0.97835 0.91404 1.21176 0.95462 1.34963 1.04082 0.92358 1.24993 0.98919 0.95267 0.95012 1.69970 1.32746 1.41719 1.08646 0.86548 0.84055 0.79079 0.78423 1.19735 1.20987 1.21024 1.20562 0.96370 0.93605 0.96511 1.20887 0.96286 0.95267 1.00024 1.21026 0.93823 0.99057 1.00390 1.20982 0.98988 0.93723 1.01678 1.21032 0.96633 0.95625 1.00794 1.21020 0.92876 0.99645 0.99201 0.92528 0.92876 0.92148 0.91057 0.91503 0.88769 0.91167 0.91353 0.92767 0.92681 0.92847 0.76602 0.95786 0.94864 0.92941 0.86629 0.86815 0.86911 0.86677 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.23 37.16 0.34 -1.48 16 2 C -0.11 -1.26 5.37 -26.73 -0.14 -1.41 16 3 C -0.11 -1.48 2.50 -91.77 -0.23 -1.71 16 4 C -0.11 -1.34 4.53 -26.73 -0.12 -1.46 16 5 C -0.15 -1.49 9.52 37.16 0.35 -1.13 16 6 C 0.52 9.05 5.77 -10.98 -0.06 8.99 16 7 O -0.55 -11.56 15.58 5.56 0.09 -11.48 16 8 N -0.70 -12.57 3.91 -54.94 -0.21 -12.78 16 9 C 0.18 3.75 2.12 -69.09 -0.15 3.61 16 10 H 0.09 1.92 7.44 -51.93 -0.39 1.54 16 11 C 0.02 0.57 4.49 -27.89 -0.13 0.44 16 12 C -0.52 -13.74 8.84 -34.44 -0.30 -14.04 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 16 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.07 -1.29 4.91 -104.62 -0.51 -1.80 16 21 C -0.11 -1.78 9.33 -39.58 -0.37 -2.15 16 22 C -0.12 -1.85 10.05 -39.59 -0.40 -2.24 16 23 C -0.14 -1.94 10.05 -39.58 -0.40 -2.33 16 24 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.11 -1.92 9.67 -39.58 -0.38 -2.30 16 26 H 0.06 0.63 6.67 -51.93 -0.35 0.29 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.87 7.01 -51.93 -0.36 0.51 16 29 H 0.07 0.67 6.72 -51.93 -0.35 0.32 16 30 H 0.07 0.73 7.55 -51.92 -0.39 0.33 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.93 6.30 -51.93 -0.33 0.60 16 33 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.49 6.87 -51.93 -0.36 0.13 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.40 6.64 8.02 -40.82 -0.33 6.31 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.12 1.81 7.71 -52.49 -0.40 1.41 16 42 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.12 2.03 8.04 -52.48 -0.42 1.61 16 LS Contribution 364.87 15.07 5.50 5.50 Total: -1.00 -30.48 364.87 -9.34 -39.83 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.43 Total: 7.52 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.99 Total: -19.75 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.52 Total: -37.64 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.48 -9.34 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193144620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.124 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds