Wall clock time and date at job start Tue Mar 31 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00131 * 2 1 4 4 C 1.38755 * 120.05470 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.93984 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.96701 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.47469 * 270.02218 * 6 5 4 8 8 C 1.36935 * 119.99703 * 95.73619 * 7 6 5 9 9 H 1.07998 * 119.99753 * 216.58088 * 8 7 6 10 10 C 1.38814 * 120.00008 * 36.58438 * 8 7 6 11 11 N 1.31616 * 120.00071 * 213.84715 * 10 8 7 12 12 Si 1.86803 * 119.99753 * 33.84804 * 10 8 7 13 13 H 1.48495 * 109.47124 * 95.11913 * 12 10 8 14 14 H 1.48501 * 109.46690 * 215.11513 * 12 10 8 15 15 H 1.48497 * 109.47386 * 335.11574 * 12 10 8 16 16 C 1.46507 * 119.99929 * 275.74263 * 7 6 5 17 17 C 1.54264 * 110.02592 * 237.55277 * 16 7 6 18 18 C 1.54972 * 104.15304 * 217.13583 * 17 16 7 19 19 C 1.54882 * 102.78007 * 37.89062 * 18 17 16 20 20 C 1.53872 * 110.03116 * 120.33411 * 16 7 6 21 21 C 1.38287 * 120.05843 * 0.02795 * 5 4 3 22 22 C 1.38237 * 120.11021 * 0.25104 * 21 5 4 23 23 C 1.38170 * 120.05890 * 359.44978 * 22 21 5 24 24 C 1.50693 * 120.02898 * 180.25263 * 23 22 21 25 25 H 1.09001 * 109.47011 * 300.00579 * 1 2 3 26 26 H 1.09000 * 109.46668 * 60.00332 * 1 2 3 27 27 H 1.08999 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.02962 * 0.05443 * 4 3 2 29 29 H 1.08994 * 109.47218 * 30.02808 * 6 5 4 30 30 H 1.09007 * 109.47025 * 150.02629 * 6 5 4 31 31 H 0.96999 * 120.00328 * 179.97438 * 11 10 8 32 32 H 1.08994 * 110.01539 * 358.94272 * 16 7 6 33 33 H 1.08997 * 110.49215 * 335.77793 * 17 16 7 34 34 H 1.09000 * 110.48588 * 98.43424 * 17 16 7 35 35 H 1.09001 * 110.71983 * 279.57428 * 18 17 16 36 36 H 1.09007 * 110.92140 * 156.30026 * 18 17 16 37 37 H 1.08992 * 110.49110 * 203.40521 * 19 18 17 38 38 H 1.09003 * 110.60055 * 80.81001 * 19 18 17 39 39 H 1.08996 * 110.03287 * 238.56930 * 20 16 7 40 40 H 1.09005 * 110.03406 * 359.95144 * 20 16 7 41 41 H 1.07999 * 119.94361 * 179.97438 * 21 5 4 42 42 H 1.08010 * 119.97062 * 179.70497 * 22 21 5 43 43 H 1.09003 * 109.47299 * 270.31479 * 24 23 22 44 44 H 1.08998 * 109.47489 * 30.32356 * 24 23 22 45 45 H 1.09008 * 109.47020 * 150.32075 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 1.1020 4.8698 -0.0011 7 7 0.8356 5.2792 -1.3823 8 6 -0.3401 4.9231 -1.9872 9 1 -0.3519 4.6684 -3.0367 10 6 -1.5168 4.8894 -1.2516 11 7 -2.4410 3.9944 -1.5290 12 14 -1.7885 6.1146 0.1322 13 1 -2.5608 7.2753 -0.3790 14 1 -2.5454 5.4612 1.2301 15 1 -0.4754 6.5810 0.6454 16 6 1.8272 6.0694 -2.1163 17 6 1.1972 7.3929 -2.5969 18 6 1.8309 7.6300 -3.9911 19 6 1.9032 6.2002 -4.5822 20 6 2.2763 5.3113 -3.3778 21 6 3.3020 3.6757 -0.0017 22 6 4.0560 2.5170 -0.0069 23 6 3.4311 1.2847 -0.0002 24 6 4.2537 0.0221 -0.0002 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2128 2.3204 -0.0001 29 1 0.1579 4.6914 0.5136 30 1 1.6521 5.6587 0.5120 31 1 -3.2631 3.9706 -1.0147 32 1 2.6868 6.2750 -1.4784 33 1 0.1153 7.2917 -2.6822 34 1 1.4530 8.2060 -1.9176 35 1 2.8284 8.0585 -3.8935 36 1 1.1956 8.2696 -4.6039 37 1 2.6737 6.1437 -5.3510 38 1 0.9365 5.9043 -4.9896 39 1 3.3539 5.1498 -3.3525 40 1 1.7572 4.3551 -3.4434 41 1 3.7924 4.6379 -0.0025 42 1 5.1345 2.5751 -0.0122 43 1 4.4519 -0.2825 -1.0279 44 1 5.1978 0.2034 0.5136 45 1 3.7063 -0.7682 0.5137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193986663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:58 Heat of formation + Delta-G solvation = -3.571013 kcal Electronic energy + Delta-G solvation = -24196.285700 eV Core-core repulsion = 20986.119462 eV Total energy + Delta-G solvation = -3210.166238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.75452 -38.00932 -36.93695 -34.63151 -32.48399 -31.26644 -29.60929 -28.03507 -27.92234 -27.07535 -26.64431 -24.32875 -22.33382 -21.64182 -20.46542 -19.97348 -18.99428 -17.28609 -16.23520 -15.90970 -15.33150 -15.23735 -15.06559 -14.90314 -14.36103 -13.74622 -13.52611 -13.41899 -13.18439 -12.87300 -12.57671 -12.56099 -12.24319 -11.92431 -11.64617 -11.59619 -11.16530 -11.00423 -10.84016 -10.72877 -10.59610 -10.48430 -10.45330 -10.35417 -10.20851 -10.01432 -9.97463 -9.71831 -9.53291 -8.45772 -8.10665 -7.55072 -6.82250 -6.12447 -3.36761 1.90189 2.01598 3.32801 3.46077 3.51424 3.73444 4.26013 4.51586 5.02700 5.20146 5.27466 5.29314 5.37600 5.41397 5.49007 5.62486 5.64203 5.65664 5.74489 5.75446 5.91041 5.96871 6.04963 6.08994 6.11052 6.20468 6.22386 6.24774 6.35511 6.36819 6.44167 6.51831 6.55235 6.64667 6.70228 6.75733 6.92500 6.94537 6.97435 7.16611 7.17897 7.30245 7.40767 7.89733 7.98537 8.39490 8.98087 9.69573 10.13501 11.02906 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.006915 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.864421 B = 4048.001809 C = 5212.743966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.323 6.323 3 C 0.120 3.880 4 C -0.175 4.175 5 C -0.046 4.046 6 C 0.180 3.820 7 N -0.586 5.586 8 C -0.262 4.262 9 H 0.077 0.923 10 C 0.047 3.953 11 N -0.879 5.879 12 Si 0.840 3.160 13 H -0.291 1.291 14 H -0.296 1.296 15 H -0.261 1.261 16 C 0.174 3.826 17 C -0.135 4.135 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.131 4.131 21 C -0.151 4.151 22 C -0.092 4.092 23 C -0.139 4.139 24 C -0.096 4.096 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.262 0.738 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.105 -2.013 1.925 10.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.237 6.237 3 C 0.075 3.925 4 C -0.194 4.194 5 C -0.049 4.049 6 C 0.055 3.945 7 N -0.305 5.305 8 C -0.390 4.390 9 H 0.095 0.905 10 C -0.155 4.155 11 N -0.518 5.518 12 Si 0.666 3.334 13 H -0.218 1.218 14 H -0.222 1.222 15 H -0.186 1.186 16 C 0.067 3.933 17 C -0.174 4.174 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.170 4.170 21 C -0.170 4.170 22 C -0.110 4.110 23 C -0.140 4.140 24 C -0.153 4.153 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.150 0.850 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.983 -2.275 1.950 10.423 hybrid contribution -0.688 0.866 0.674 1.295 sum 9.295 -1.409 2.624 9.760 Atomic orbital electron populations 1.23019 0.78312 1.03010 1.02358 1.85944 1.21369 1.27314 1.89092 1.18847 0.91610 0.84203 0.97817 1.21236 1.00564 0.91424 1.06212 1.20791 0.93856 0.96612 0.93626 1.20285 0.96485 0.90215 0.87560 1.44215 1.17146 1.58300 1.10885 1.18534 0.83037 1.40761 0.96669 0.90508 1.25421 0.95735 0.97210 0.97152 1.70069 1.09414 1.30605 1.41671 0.87448 0.78427 0.84611 0.82873 1.21809 1.22247 1.18582 1.21036 0.90744 0.89460 0.92016 1.22822 1.02565 0.97360 0.94694 1.22415 0.99520 0.96685 0.97313 1.22251 1.00694 0.95297 0.97301 1.22544 0.98932 1.00248 0.95317 1.20832 0.93573 0.97582 1.05062 1.20670 0.98829 0.91341 1.00172 1.19033 0.90543 0.95712 1.08719 1.20493 0.98264 0.95003 1.01533 0.92946 0.91672 0.88995 0.84982 0.91942 0.93757 0.92825 0.93079 0.89753 0.93482 0.92739 0.92682 0.93329 0.91796 0.93702 0.90739 0.86970 0.86518 0.92170 0.92464 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.32 -5.63 9.54 -19.41 -0.19 -5.82 16 3 C 0.12 2.23 6.66 -39.22 -0.26 1.97 16 4 C -0.17 -3.54 8.69 -39.43 -0.34 -3.88 16 5 C -0.05 -0.90 5.45 -104.64 -0.57 -1.47 16 6 C 0.18 3.82 3.97 -5.19 -0.02 3.79 16 7 N -0.59 -13.03 1.99 -165.75 -0.33 -13.36 16 8 C -0.26 -6.76 7.94 -15.06 -0.12 -6.88 16 9 H 0.08 2.18 7.39 -52.49 -0.39 1.80 16 10 C 0.05 1.25 5.00 -17.43 -0.09 1.16 16 11 N -0.88 -24.92 13.97 55.49 0.78 -24.14 16 12 Si 0.84 20.52 26.29 -169.99 -4.47 16.05 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 15 H -0.26 -6.10 5.93 56.52 0.33 -5.77 16 16 C 0.17 3.36 3.42 -66.81 -0.23 3.13 16 17 C -0.14 -2.49 6.42 -25.03 -0.16 -2.65 16 18 C -0.12 -1.90 6.91 -24.70 -0.17 -2.07 16 19 C -0.12 -1.95 6.83 -25.07 -0.17 -2.12 16 20 C -0.13 -2.41 6.17 -25.61 -0.16 -2.57 16 21 C -0.15 -2.61 9.70 -39.56 -0.38 -2.99 16 22 C -0.09 -1.46 9.70 -39.61 -0.38 -1.84 16 23 C -0.14 -2.32 5.89 -104.48 -0.62 -2.93 16 24 C -0.10 -1.30 9.79 36.00 0.35 -0.94 16 25 H 0.05 0.78 7.66 -51.93 -0.40 0.39 16 26 H 0.06 1.11 7.66 -51.93 -0.40 0.71 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.13 2.87 6.30 -52.49 -0.33 2.54 16 29 H 0.06 1.43 4.53 -51.93 -0.24 1.19 16 30 H 0.04 0.87 7.99 -51.93 -0.41 0.45 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.05 0.92 7.90 -51.93 -0.41 0.51 16 33 H 0.08 1.80 7.02 -51.93 -0.36 1.43 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.60 7.05 -51.93 -0.37 1.23 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 45 H 0.06 0.86 7.53 -51.92 -0.39 0.47 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -28.06 352.95 -8.77 -36.83 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.55 Total: 4.00 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -2.33 Total: -18.87 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.45 Total: -37.51 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.19 Total: -5.82 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.47 Total: 16.05 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.06 -8.77 -36.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193986663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.257 kcal (2) G-P(sol) polarization free energy of solvation -28.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds