Wall clock time and date at job start Tue Mar 31 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00131 * 2 1 4 4 C 1.38755 * 120.05470 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.93984 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.96701 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.47469 * 270.02218 * 6 5 4 8 8 C 1.36935 * 119.99703 * 95.73619 * 7 6 5 9 9 H 1.07998 * 119.99753 * 216.58088 * 8 7 6 10 10 C 1.38814 * 120.00008 * 36.58438 * 8 7 6 11 11 N 1.31616 * 120.00071 * 213.84715 * 10 8 7 12 12 Si 1.86803 * 119.99753 * 33.84804 * 10 8 7 13 13 H 1.48495 * 109.47124 * 95.11913 * 12 10 8 14 14 H 1.48501 * 109.46690 * 215.11513 * 12 10 8 15 15 H 1.48497 * 109.47386 * 335.11574 * 12 10 8 16 16 C 1.46507 * 119.99929 * 275.74263 * 7 6 5 17 17 C 1.54264 * 110.02592 * 237.55277 * 16 7 6 18 18 C 1.54972 * 104.15304 * 217.13583 * 17 16 7 19 19 C 1.54882 * 102.78007 * 37.89062 * 18 17 16 20 20 C 1.53872 * 110.03116 * 120.33411 * 16 7 6 21 21 C 1.38287 * 120.05843 * 0.02795 * 5 4 3 22 22 C 1.38237 * 120.11021 * 0.25104 * 21 5 4 23 23 C 1.38170 * 120.05890 * 359.44978 * 22 21 5 24 24 C 1.50693 * 120.02898 * 180.25263 * 23 22 21 25 25 H 1.09001 * 109.47011 * 300.00579 * 1 2 3 26 26 H 1.09000 * 109.46668 * 60.00332 * 1 2 3 27 27 H 1.08999 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.02962 * 0.05443 * 4 3 2 29 29 H 1.08994 * 109.47218 * 30.02808 * 6 5 4 30 30 H 1.09007 * 109.47025 * 150.02629 * 6 5 4 31 31 H 0.96999 * 120.00328 * 179.97438 * 11 10 8 32 32 H 1.08994 * 110.01539 * 358.94272 * 16 7 6 33 33 H 1.08997 * 110.49215 * 335.77793 * 17 16 7 34 34 H 1.09000 * 110.48588 * 98.43424 * 17 16 7 35 35 H 1.09001 * 110.71983 * 279.57428 * 18 17 16 36 36 H 1.09007 * 110.92140 * 156.30026 * 18 17 16 37 37 H 1.08992 * 110.49110 * 203.40521 * 19 18 17 38 38 H 1.09003 * 110.60055 * 80.81001 * 19 18 17 39 39 H 1.08996 * 110.03287 * 238.56930 * 20 16 7 40 40 H 1.09005 * 110.03406 * 359.95144 * 20 16 7 41 41 H 1.07999 * 119.94361 * 179.97438 * 21 5 4 42 42 H 1.08010 * 119.97062 * 179.70497 * 22 21 5 43 43 H 1.09003 * 109.47299 * 270.31479 * 24 23 22 44 44 H 1.08998 * 109.47489 * 30.32356 * 24 23 22 45 45 H 1.09008 * 109.47020 * 150.32075 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 1.1020 4.8698 -0.0011 7 7 0.8356 5.2792 -1.3823 8 6 -0.3401 4.9231 -1.9872 9 1 -0.3519 4.6684 -3.0367 10 6 -1.5168 4.8894 -1.2516 11 7 -2.4410 3.9944 -1.5290 12 14 -1.7885 6.1146 0.1322 13 1 -2.5608 7.2753 -0.3790 14 1 -2.5454 5.4612 1.2301 15 1 -0.4754 6.5810 0.6454 16 6 1.8272 6.0694 -2.1163 17 6 1.1972 7.3929 -2.5969 18 6 1.8309 7.6300 -3.9911 19 6 1.9032 6.2002 -4.5822 20 6 2.2763 5.3113 -3.3778 21 6 3.3020 3.6757 -0.0017 22 6 4.0560 2.5170 -0.0069 23 6 3.4311 1.2847 -0.0002 24 6 4.2537 0.0221 -0.0002 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2128 2.3204 -0.0001 29 1 0.1579 4.6914 0.5136 30 1 1.6521 5.6587 0.5120 31 1 -3.2631 3.9706 -1.0147 32 1 2.6868 6.2750 -1.4784 33 1 0.1153 7.2917 -2.6822 34 1 1.4530 8.2060 -1.9176 35 1 2.8284 8.0585 -3.8935 36 1 1.1956 8.2696 -4.6039 37 1 2.6737 6.1437 -5.3510 38 1 0.9365 5.9043 -4.9896 39 1 3.3539 5.1498 -3.3525 40 1 1.7572 4.3551 -3.4434 41 1 3.7924 4.6379 -0.0025 42 1 5.1345 2.5751 -0.0122 43 1 4.4519 -0.2825 -1.0279 44 1 5.1978 0.2034 0.5136 45 1 3.7063 -0.7682 0.5137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193986663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:58 Heat of formation + Delta-G solvation = -17.363015 kcal Electronic energy + Delta-G solvation = -24196.883766 eV Core-core repulsion = 20986.119462 eV Total energy + Delta-G solvation = -3210.764304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13932 -39.54396 -38.30821 -36.21904 -34.14155 -33.00221 -30.98130 -29.43385 -29.35330 -28.39736 -28.31094 -25.90099 -23.99988 -23.01974 -21.88399 -21.32596 -20.66127 -18.86911 -17.92656 -17.42711 -16.82850 -16.75740 -16.64418 -16.31633 -15.93654 -15.15275 -15.02724 -14.84713 -14.67594 -14.31998 -14.17797 -14.00485 -13.96221 -13.18086 -12.96170 -12.90388 -12.75994 -12.71458 -12.41851 -12.24594 -12.19378 -11.91753 -11.87303 -11.81231 -11.74204 -11.60262 -11.41892 -11.33590 -11.22024 -10.50289 -9.52742 -8.92943 -8.66927 -8.22022 -5.42006 0.50117 0.62299 1.32699 1.43216 1.50048 2.42005 2.46009 2.80130 3.10084 3.52256 3.90587 3.97608 3.99683 4.02190 4.24048 4.27253 4.29889 4.33840 4.36441 4.46873 4.65791 4.68597 4.75100 4.76234 4.78809 4.87712 4.89419 4.90423 4.93954 4.95869 5.01285 5.07067 5.18976 5.22118 5.31655 5.39986 5.51411 5.54031 5.64442 5.64563 5.68995 5.88581 5.97434 6.01954 6.29425 6.49984 7.06023 7.73206 8.16548 8.97897 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.006915 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.864421 B = 4048.001809 C = 5212.743966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.103 3.897 4 C -0.199 4.199 5 C -0.065 4.065 6 C 0.179 3.821 7 N -0.593 5.593 8 C -0.235 4.235 9 H 0.036 0.964 10 C -0.002 4.002 11 N -0.926 5.926 12 Si 0.897 3.103 13 H -0.299 1.299 14 H -0.304 1.304 15 H -0.240 1.240 16 C 0.166 3.834 17 C -0.137 4.137 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.148 4.148 22 C -0.083 4.083 23 C -0.140 4.140 24 C -0.093 4.093 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.259 0.741 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.137 0.863 42 H 0.159 0.841 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.228 -1.034 2.540 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.240 6.240 3 C 0.058 3.942 4 C -0.219 4.219 5 C -0.068 4.068 6 C 0.054 3.946 7 N -0.314 5.314 8 C -0.365 4.365 9 H 0.054 0.946 10 C -0.200 4.200 11 N -0.569 5.569 12 Si 0.724 3.276 13 H -0.228 1.228 14 H -0.231 1.231 15 H -0.163 1.163 16 C 0.061 3.939 17 C -0.176 4.176 18 C -0.147 4.147 19 C -0.154 4.154 20 C -0.164 4.164 21 C -0.167 4.167 22 C -0.100 4.100 23 C -0.141 4.141 24 C -0.150 4.150 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.146 0.854 28 H 0.118 0.882 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.155 0.845 42 H 0.176 0.824 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.147 -1.276 2.577 14.436 hybrid contribution -1.871 0.463 0.436 1.976 sum 12.275 -0.813 3.013 12.666 Atomic orbital electron populations 1.23083 0.77612 1.04827 1.00817 1.85930 1.22045 1.26961 1.89074 1.19115 0.92750 0.83846 0.98517 1.21118 0.99296 0.93019 1.08449 1.20675 0.95198 0.95368 0.95549 1.20262 0.95964 0.91784 0.86612 1.44284 1.16541 1.59203 1.11345 1.18244 0.84612 1.38656 0.94984 0.94588 1.25830 0.95857 0.98543 0.99771 1.70164 1.10220 1.32610 1.43890 0.86522 0.78836 0.81998 0.80238 1.22770 1.23129 1.16324 1.21305 0.90699 0.89507 0.92415 1.22783 1.00252 0.97467 0.97102 1.22382 1.01080 0.96020 0.95253 1.22234 1.00161 0.95708 0.97308 1.22450 0.99750 0.98351 0.95890 1.21079 0.92229 0.99448 1.03900 1.21129 1.00789 0.90173 0.97936 1.19565 0.89856 0.97791 1.06912 1.20551 0.98897 0.93154 1.02399 0.93253 0.94549 0.85362 0.88228 0.94558 0.91435 0.93187 0.90517 0.93608 0.91684 0.89625 0.91814 0.90520 0.94527 0.91262 0.95024 0.84491 0.82352 0.91393 0.89493 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 9.81 113.37 1.11 2.12 16 2 O -0.33 -11.50 9.54 -92.37 -0.88 -12.38 16 3 C 0.10 3.82 6.66 22.51 0.15 3.97 16 4 C -0.20 -8.37 8.69 22.37 0.19 -8.18 16 5 C -0.07 -2.55 5.45 -19.88 -0.11 -2.66 16 6 C 0.18 7.53 3.97 85.63 0.34 7.87 16 7 N -0.59 -26.64 1.99 -678.31 -1.35 -27.99 16 8 C -0.24 -12.79 7.94 84.03 0.67 -12.12 16 9 H 0.04 2.23 7.39 -2.91 -0.02 2.21 16 10 C 0.00 -0.13 5.00 84.86 0.42 0.30 16 11 N -0.93 -56.16 13.97 21.65 0.30 -55.86 16 12 Si 0.90 44.24 26.29 68.60 1.80 46.05 16 13 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 14 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 15 H -0.24 -10.84 5.93 99.48 0.59 -10.25 16 16 C 0.17 6.14 3.42 45.71 0.16 6.30 16 17 C -0.14 -4.81 6.42 31.70 0.20 -4.60 16 18 C -0.11 -3.11 6.91 31.91 0.22 -2.89 16 19 C -0.12 -3.68 6.83 31.67 0.22 -3.47 16 20 C -0.13 -4.46 6.17 31.32 0.19 -4.27 16 21 C -0.15 -4.64 9.70 22.28 0.22 -4.43 16 22 C -0.08 -2.28 9.70 22.25 0.22 -2.07 16 23 C -0.14 -4.34 5.89 -19.77 -0.12 -4.45 16 24 C -0.09 -2.20 9.79 71.23 0.70 -1.50 16 25 H 0.05 1.59 7.66 -2.39 -0.02 1.57 16 26 H 0.04 1.36 7.66 -2.39 -0.02 1.34 16 27 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.10 4.75 6.30 -2.91 -0.02 4.73 16 29 H 0.04 1.70 4.53 -2.39 -0.01 1.69 16 30 H 0.07 2.49 7.99 -2.38 -0.02 2.47 16 31 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.08 2.46 7.90 -2.39 -0.02 2.44 16 33 H 0.05 1.96 7.02 -2.39 -0.02 1.94 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.03 1.38 7.05 -2.38 -0.02 1.37 16 41 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 42 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 45 H 0.06 1.47 7.53 -2.38 -0.02 1.45 16 Total: -1.00 -65.64 352.95 5.49 -60.15 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.83 Total: 20.10 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 4.78 Total: -30.07 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -1.05 Total: -83.85 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.88 Total: -12.38 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.80 Total: 46.05 kcal Total: -65.64 5.49 -60.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193986663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.786 kcal (2) G-P(sol) polarization free energy of solvation -65.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds