Wall clock time and date at job start Tue Mar 31 2020 06:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47377 * 2 1 4 4 C 1.52995 * 109.47377 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47362 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00376 * 89.99833 * 5 4 3 7 7 C 1.38234 * 120.00075 * 179.97438 * 6 5 4 8 8 C 1.38227 * 119.99997 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00116 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47394 * 89.99734 * 9 8 7 11 11 O 1.21275 * 119.99943 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99964 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99973 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.46864 * 325.00310 * 13 12 10 15 15 C 1.53000 * 109.46908 * 85.00105 * 13 12 10 16 16 C 1.50693 * 109.47398 * 205.00064 * 13 12 10 17 17 H 1.08005 * 120.00291 * 354.36544 * 16 13 12 18 18 C 1.37881 * 120.00259 * 174.36876 * 16 13 12 19 19 N 1.31514 * 120.00212 * 156.61898 * 18 16 13 20 20 Si 1.86795 * 119.99775 * 336.88788 * 18 16 13 21 21 H 1.48501 * 109.47165 * 179.72704 * 20 18 16 22 22 H 1.48500 * 109.47318 * 299.72681 * 20 18 16 23 23 H 1.48500 * 109.47076 * 59.72783 * 20 18 16 24 24 C 1.38229 * 120.00374 * 0.25121 * 8 7 6 25 25 C 1.38235 * 119.99682 * 270.02242 * 5 4 3 26 26 H 1.09000 * 109.47279 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47172 * 299.99669 * 1 2 3 28 28 H 1.09003 * 109.47321 * 59.99335 * 1 2 3 29 29 H 1.09007 * 109.46736 * 240.00537 * 2 1 3 30 30 H 1.08994 * 109.47434 * 120.00657 * 2 1 3 31 31 H 1.09007 * 109.46749 * 60.00545 * 3 2 1 32 32 H 1.09003 * 109.47438 * 300.00593 * 3 2 1 33 33 H 1.08997 * 109.47172 * 60.00331 * 4 3 2 34 34 H 1.09003 * 109.47321 * 300.00665 * 4 3 2 35 35 H 1.08006 * 119.99803 * 0.02562 * 6 5 4 36 36 H 1.08003 * 119.99786 * 180.02562 * 7 6 5 37 37 H 1.09007 * 109.46709 * 329.99990 * 9 8 7 38 38 H 1.08994 * 109.47173 * 210.00287 * 9 8 7 39 39 H 0.96999 * 120.00353 * 0.02562 * 12 10 9 40 40 H 1.09003 * 109.46967 * 173.10985 * 15 13 12 41 41 H 1.09007 * 109.46955 * 293.10213 * 15 13 12 42 42 H 1.08994 * 109.47507 * 53.10469 * 15 13 12 43 43 H 0.97003 * 119.99433 * 355.20223 * 19 18 16 44 44 H 1.08003 * 120.00291 * 179.73057 * 24 8 7 45 45 H 1.07994 * 120.00440 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8632 0.0000 6 6 4.3033 3.5142 1.1974 7 6 4.7646 4.8173 1.1979 8 6 4.9945 5.4695 0.0011 9 6 5.4969 6.8904 0.0016 10 6 7.0039 6.8904 0.0010 11 8 7.6103 5.8401 -0.0002 12 7 7.6778 8.0576 0.0019 13 6 9.1428 8.0576 0.0019 14 1 9.5061 7.2153 0.5907 15 6 9.6527 7.9329 -1.4352 16 6 9.6451 9.3448 0.6033 17 1 8.9476 10.1261 0.8669 18 6 10.9953 9.5252 0.8169 19 7 11.4924 10.7403 0.8932 20 14 12.1196 8.0436 0.9904 21 1 13.5151 8.5036 1.2052 22 1 11.6842 7.2249 2.1503 23 1 12.0532 7.2244 -0.2464 24 6 4.7582 4.8206 -1.1963 25 6 4.3018 3.5157 -1.1969 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9288 -0.8909 34 1 3.9337 0.9284 0.8891 35 1 4.1240 3.0044 2.1325 36 1 4.9454 5.3258 2.1334 37 1 5.1339 7.4037 0.8921 38 1 5.1332 7.4047 -0.8879 39 1 7.1928 8.8976 0.0032 40 1 10.7358 8.0556 -1.4483 41 1 9.3937 6.9499 -1.8287 42 1 9.1922 8.7043 -2.0524 43 1 10.9228 11.5084 0.7303 44 1 4.9337 5.3317 -2.1314 45 1 4.1207 3.0074 -2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194655594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:51 Heat of formation + Delta-G solvation = -50.788339 kcal Electronic energy + Delta-G solvation = -21999.559979 eV Core-core repulsion = 18787.346244 eV Total energy + Delta-G solvation = -3212.213735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.79639 -38.62709 -36.10990 -34.91509 -33.20067 -32.43317 -30.84032 -30.57815 -29.29815 -26.80168 -24.83679 -23.79001 -22.66740 -21.56306 -21.13565 -20.29880 -19.49936 -17.77163 -16.25675 -16.17262 -16.07058 -15.31824 -15.22684 -14.80331 -14.32658 -14.19774 -13.70784 -13.39317 -13.33215 -13.12147 -13.10561 -12.78531 -12.57118 -12.30089 -12.10166 -11.96084 -11.65854 -11.51659 -11.39811 -11.36826 -11.27448 -10.95021 -10.73718 -10.72822 -10.48262 -10.10335 -9.83325 -9.23537 -9.13516 -8.80443 -8.39460 -8.29136 -8.13773 -6.59500 -4.20239 1.40224 1.52121 3.29190 3.41463 3.46410 3.61950 3.71637 4.21987 4.44661 4.49895 4.61758 4.77812 4.84589 4.85144 5.01852 5.07356 5.09269 5.11719 5.36158 5.41382 5.43243 5.47721 5.53993 5.56209 5.57297 5.64308 5.71165 5.76123 5.83823 5.96496 6.05257 6.14731 6.16592 6.40998 6.48956 6.57422 6.66151 6.69639 6.72411 6.98673 7.10004 7.31644 7.43413 7.69403 8.24697 8.51609 8.71749 9.02308 9.45548 10.78662 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.038416 B = 0.002586 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.691568 B =10824.713048 C =11023.004872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.079 4.079 5 C -0.089 4.089 6 C -0.117 4.117 7 C -0.103 4.103 8 C -0.058 4.058 9 C -0.107 4.107 10 C 0.502 3.498 11 O -0.549 6.549 12 N -0.705 5.705 13 C 0.243 3.757 14 H 0.039 0.961 15 C -0.155 4.155 16 C -0.624 4.624 17 H 0.062 0.938 18 C 0.045 3.955 19 N -0.890 5.890 20 Si 1.034 2.966 21 H -0.283 1.283 22 H -0.281 1.281 23 H -0.274 1.274 24 C -0.104 4.104 25 C -0.117 4.117 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.392 0.608 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.042 0.958 43 H 0.270 0.730 44 H 0.118 0.882 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.482 -15.823 -2.730 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.116 4.116 5 C -0.089 4.089 6 C -0.135 4.135 7 C -0.121 4.121 8 C -0.058 4.058 9 C -0.147 4.147 10 C 0.287 3.713 11 O -0.427 6.427 12 N -0.353 5.353 13 C 0.140 3.860 14 H 0.057 0.943 15 C -0.214 4.214 16 C -0.661 4.661 17 H 0.080 0.920 18 C -0.163 4.163 19 N -0.522 5.522 20 Si 0.861 3.139 21 H -0.209 1.209 22 H -0.207 1.207 23 H -0.200 1.200 24 C -0.122 4.122 25 C -0.135 4.135 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.225 0.775 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.136 0.864 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.439 -16.982 -2.416 25.184 hybrid contribution -1.751 1.063 -0.310 2.072 sum -20.190 -15.919 -2.727 25.856 Atomic orbital electron populations 1.21776 0.95951 1.01470 1.01845 1.21558 0.95811 0.96966 1.02014 1.21606 0.94530 0.96550 1.02414 1.20590 0.95417 0.92894 1.02739 1.19791 0.99908 0.95962 0.93266 1.20918 1.00467 0.94754 0.97344 1.20966 0.98730 0.94897 0.97497 1.19316 0.98048 0.94999 0.93472 1.20744 0.94168 0.95094 1.04721 1.20386 0.88983 0.84664 0.77256 1.90667 1.70203 1.31397 1.50438 1.46301 1.09267 1.07035 1.72734 1.18961 0.75491 0.98460 0.93111 0.94289 1.22417 1.01270 0.98494 0.99188 1.22012 0.94849 1.01017 1.48267 0.91989 1.25638 0.96354 1.01562 0.92726 1.70874 1.38370 0.98886 1.44100 0.84176 0.76372 0.75471 0.77883 1.20861 1.20689 1.19996 1.20948 0.98926 0.94893 0.97403 1.20910 1.00569 0.94724 0.97330 0.92883 0.92760 0.92775 0.92045 0.92031 0.91860 0.91881 0.91193 0.91183 0.86418 0.86283 0.88428 0.88516 0.77476 0.92339 0.95261 0.93855 0.91984 0.86374 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.11 -0.88 5.20 -26.73 -0.14 -1.02 16 4 C -0.08 -0.71 5.34 -27.89 -0.15 -0.86 16 5 C -0.09 -1.04 5.13 -104.63 -0.54 -1.58 16 6 C -0.12 -1.44 9.70 -39.58 -0.38 -1.83 16 7 C -0.10 -1.41 9.70 -39.59 -0.38 -1.80 16 8 C -0.06 -0.83 4.37 -104.63 -0.46 -1.29 16 9 C -0.11 -1.49 5.83 -29.03 -0.17 -1.66 16 10 C 0.50 9.66 7.79 -10.98 -0.09 9.57 16 11 O -0.55 -12.75 15.70 5.56 0.09 -12.67 16 12 N -0.71 -14.34 5.07 -54.94 -0.28 -14.62 16 13 C 0.24 5.95 2.16 -69.09 -0.15 5.80 16 14 H 0.04 1.04 6.15 -51.93 -0.32 0.72 16 15 C -0.15 -3.59 9.20 37.16 0.34 -3.24 16 16 C -0.62 -16.98 8.95 -34.44 -0.31 -17.29 16 17 H 0.06 1.75 7.96 -52.48 -0.42 1.33 16 18 C 0.04 1.27 5.19 -17.82 -0.09 1.17 16 19 N -0.89 -26.44 13.70 55.43 0.76 -25.68 16 20 Si 1.03 25.37 26.44 -169.99 -4.50 20.88 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.40 6.14 56.52 0.35 -6.05 16 24 C -0.10 -1.40 9.70 -39.58 -0.38 -1.79 16 25 C -0.12 -1.43 9.70 -39.58 -0.38 -1.82 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.10 1.15 8.09 -51.92 -0.42 0.73 16 38 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 39 H 0.39 6.98 8.52 -40.82 -0.35 6.64 16 40 H 0.06 1.39 5.47 -51.93 -0.28 1.10 16 41 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 44 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 45 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -32.10 369.78 -9.18 -41.27 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.75 Total: 4.40 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -3.07 Total: -19.16 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.48 Total: -40.30 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.50 Total: 20.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.10 -9.18 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194655594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.515 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds