Wall clock time and date at job start Tue Mar 31 2020 06:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47377 * 2 1 4 4 C 1.52995 * 109.47377 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47362 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00376 * 89.99833 * 5 4 3 7 7 C 1.38234 * 120.00075 * 179.97438 * 6 5 4 8 8 C 1.38227 * 119.99997 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00116 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47394 * 89.99734 * 9 8 7 11 11 O 1.21275 * 119.99943 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99964 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99973 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.46864 * 325.00310 * 13 12 10 15 15 C 1.53000 * 109.46908 * 85.00105 * 13 12 10 16 16 C 1.50693 * 109.47398 * 205.00064 * 13 12 10 17 17 H 1.08005 * 120.00291 * 354.36544 * 16 13 12 18 18 C 1.37881 * 120.00259 * 174.36876 * 16 13 12 19 19 N 1.31514 * 120.00212 * 156.61898 * 18 16 13 20 20 Si 1.86795 * 119.99775 * 336.88788 * 18 16 13 21 21 H 1.48501 * 109.47165 * 179.72704 * 20 18 16 22 22 H 1.48500 * 109.47318 * 299.72681 * 20 18 16 23 23 H 1.48500 * 109.47076 * 59.72783 * 20 18 16 24 24 C 1.38229 * 120.00374 * 0.25121 * 8 7 6 25 25 C 1.38235 * 119.99682 * 270.02242 * 5 4 3 26 26 H 1.09000 * 109.47279 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47172 * 299.99669 * 1 2 3 28 28 H 1.09003 * 109.47321 * 59.99335 * 1 2 3 29 29 H 1.09007 * 109.46736 * 240.00537 * 2 1 3 30 30 H 1.08994 * 109.47434 * 120.00657 * 2 1 3 31 31 H 1.09007 * 109.46749 * 60.00545 * 3 2 1 32 32 H 1.09003 * 109.47438 * 300.00593 * 3 2 1 33 33 H 1.08997 * 109.47172 * 60.00331 * 4 3 2 34 34 H 1.09003 * 109.47321 * 300.00665 * 4 3 2 35 35 H 1.08006 * 119.99803 * 0.02562 * 6 5 4 36 36 H 1.08003 * 119.99786 * 180.02562 * 7 6 5 37 37 H 1.09007 * 109.46709 * 329.99990 * 9 8 7 38 38 H 1.08994 * 109.47173 * 210.00287 * 9 8 7 39 39 H 0.96999 * 120.00353 * 0.02562 * 12 10 9 40 40 H 1.09003 * 109.46967 * 173.10985 * 15 13 12 41 41 H 1.09007 * 109.46955 * 293.10213 * 15 13 12 42 42 H 1.08994 * 109.47507 * 53.10469 * 15 13 12 43 43 H 0.97003 * 119.99433 * 355.20223 * 19 18 16 44 44 H 1.08003 * 120.00291 * 179.73057 * 24 8 7 45 45 H 1.07994 * 120.00440 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8632 0.0000 6 6 4.3033 3.5142 1.1974 7 6 4.7646 4.8173 1.1979 8 6 4.9945 5.4695 0.0011 9 6 5.4969 6.8904 0.0016 10 6 7.0039 6.8904 0.0010 11 8 7.6103 5.8401 -0.0002 12 7 7.6778 8.0576 0.0019 13 6 9.1428 8.0576 0.0019 14 1 9.5061 7.2153 0.5907 15 6 9.6527 7.9329 -1.4352 16 6 9.6451 9.3448 0.6033 17 1 8.9476 10.1261 0.8669 18 6 10.9953 9.5252 0.8169 19 7 11.4924 10.7403 0.8932 20 14 12.1196 8.0436 0.9904 21 1 13.5151 8.5036 1.2052 22 1 11.6842 7.2249 2.1503 23 1 12.0532 7.2244 -0.2464 24 6 4.7582 4.8206 -1.1963 25 6 4.3018 3.5157 -1.1969 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9288 -0.8909 34 1 3.9337 0.9284 0.8891 35 1 4.1240 3.0044 2.1325 36 1 4.9454 5.3258 2.1334 37 1 5.1339 7.4037 0.8921 38 1 5.1332 7.4047 -0.8879 39 1 7.1928 8.8976 0.0032 40 1 10.7358 8.0556 -1.4483 41 1 9.3937 6.9499 -1.8287 42 1 9.1922 8.7043 -2.0524 43 1 10.9228 11.5084 0.7303 44 1 4.9337 5.3317 -2.1314 45 1 4.1207 3.0074 -2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194655594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:50 Heat of formation + Delta-G solvation = -68.647588 kcal Electronic energy + Delta-G solvation = -22000.334414 eV Core-core repulsion = 18787.346244 eV Total energy + Delta-G solvation = -3212.988170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01151 -39.92879 -36.99888 -36.56492 -34.47953 -34.09170 -31.92969 -31.78796 -30.58021 -27.76944 -26.87634 -24.63865 -23.62056 -22.86696 -21.96945 -21.47339 -21.11881 -19.76536 -17.86201 -17.36077 -16.91422 -16.63852 -16.14251 -15.97100 -15.54419 -15.44247 -14.93544 -14.76267 -14.64499 -14.30569 -14.25869 -14.06382 -13.83487 -13.60659 -13.43087 -13.31017 -12.91890 -12.84982 -12.45625 -12.32358 -12.15498 -12.03492 -11.96752 -11.76746 -11.75686 -11.47617 -11.37422 -11.23375 -10.81419 -10.46687 -9.88809 -9.76972 -9.37998 -8.81533 -6.42931 0.42290 0.55263 1.45329 1.47844 1.69100 1.79422 2.40962 2.48107 2.93744 2.97294 3.71031 3.87068 3.89382 4.10359 4.13752 4.16891 4.23048 4.32839 4.38366 4.50384 4.55327 4.57441 4.65273 4.71482 4.77104 4.79690 4.81120 4.85077 4.98841 4.99104 5.07902 5.15909 5.21978 5.23441 5.32614 5.40365 5.42548 5.51706 5.53374 5.66455 5.67704 5.72209 5.75860 6.01480 6.16341 6.52991 6.87714 7.26402 7.47675 8.55504 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.038416 B = 0.002586 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.691568 B =10824.713048 C =11023.004872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.077 4.077 5 C -0.090 4.090 6 C -0.127 4.127 7 C -0.120 4.120 8 C -0.081 4.081 9 C -0.094 4.094 10 C 0.502 3.498 11 O -0.590 6.590 12 N -0.706 5.706 13 C 0.245 3.755 14 H 0.018 0.982 15 C -0.147 4.147 16 C -0.620 4.620 17 H 0.044 0.956 18 C 0.002 3.998 19 N -0.918 5.918 20 Si 1.066 2.934 21 H -0.279 1.279 22 H -0.276 1.276 23 H -0.256 1.256 24 C -0.117 4.117 25 C -0.126 4.126 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.405 0.595 40 H 0.049 0.951 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.261 0.739 44 H 0.127 0.873 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.904 -17.478 -3.269 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.114 4.114 5 C -0.090 4.090 6 C -0.144 4.144 7 C -0.138 4.138 8 C -0.082 4.082 9 C -0.133 4.133 10 C 0.289 3.711 11 O -0.471 6.471 12 N -0.355 5.355 13 C 0.140 3.860 14 H 0.036 0.964 15 C -0.206 4.206 16 C -0.658 4.658 17 H 0.062 0.938 18 C -0.200 4.200 19 N -0.552 5.552 20 Si 0.889 3.111 21 H -0.205 1.205 22 H -0.201 1.201 23 H -0.181 1.181 24 C -0.135 4.135 25 C -0.144 4.144 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.240 0.760 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.145 0.855 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.904 -18.621 -2.961 27.417 hybrid contribution -1.402 1.558 -0.126 2.099 sum -21.306 -17.064 -3.087 27.471 Atomic orbital electron populations 1.21780 0.95578 1.01931 1.01814 1.21542 0.96131 0.96134 1.02357 1.21545 0.93572 0.97311 1.02102 1.20627 0.96148 0.91234 1.03368 1.20142 0.98839 0.97134 0.92901 1.21201 1.00208 0.94523 0.98511 1.21185 0.99254 0.95708 0.97650 1.19462 0.99293 0.95389 0.94046 1.20715 0.89587 0.95861 1.07176 1.21246 0.91112 0.83284 0.75413 1.90642 1.71630 1.32738 1.52080 1.46155 1.07774 1.08412 1.73178 1.18674 0.78105 0.95892 0.93313 0.96394 1.22287 1.00713 0.99238 0.98346 1.22161 0.94538 1.01566 1.47529 0.93823 1.26702 0.98219 1.02767 0.92348 1.70963 1.38519 0.99300 1.46389 0.83732 0.75166 0.73366 0.78828 1.20474 1.20127 1.18084 1.21190 0.99134 0.95620 0.97581 1.21218 1.00158 0.94524 0.98471 0.92206 0.92842 0.92788 0.91665 0.91741 0.92246 0.92138 0.90493 0.90636 0.84742 0.85947 0.86167 0.85681 0.76008 0.93202 0.94551 0.92843 0.92954 0.85533 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.87 16 2 C -0.12 -1.39 5.93 30.59 0.18 -1.21 16 3 C -0.11 -1.46 5.20 30.59 0.16 -1.30 16 4 C -0.08 -1.21 5.34 29.85 0.16 -1.05 16 5 C -0.09 -1.96 5.13 -19.87 -0.10 -2.06 16 6 C -0.13 -2.95 9.70 22.27 0.22 -2.74 16 7 C -0.12 -3.17 9.70 22.27 0.22 -2.95 16 8 C -0.08 -2.23 4.37 -19.87 -0.09 -2.31 16 9 C -0.09 -2.42 5.83 29.10 0.17 -2.25 16 10 C 0.50 18.67 7.79 87.66 0.68 19.35 16 11 O -0.59 -27.06 15.70 -3.02 -0.05 -27.11 16 12 N -0.71 -27.94 5.07 -446.11 -2.26 -30.20 16 13 C 0.25 11.83 2.16 44.24 0.10 11.93 16 14 H 0.02 0.96 6.15 -2.38 -0.01 0.95 16 15 C -0.15 -6.63 9.20 71.98 0.66 -5.97 16 16 C -0.62 -33.81 8.95 25.60 0.23 -33.58 16 17 H 0.04 2.49 7.96 -2.91 -0.02 2.47 16 18 C 0.00 0.12 5.19 84.66 0.44 0.56 16 19 N -0.92 -55.06 13.70 21.45 0.29 -54.77 16 20 Si 1.07 50.92 26.44 68.60 1.81 52.73 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.26 -11.41 6.14 99.48 0.61 -10.80 16 24 C -0.12 -2.99 9.70 22.27 0.22 -2.78 16 25 C -0.13 -2.86 9.70 22.27 0.22 -2.64 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 34 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 37 H 0.12 2.54 8.09 -2.38 -0.02 2.52 16 38 H 0.13 2.50 8.08 -2.39 -0.02 2.48 16 39 H 0.41 13.89 8.52 -92.71 -0.79 13.10 16 40 H 0.05 2.30 5.47 -2.39 -0.01 2.29 16 41 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.26 15.62 8.73 -92.71 -0.81 14.81 16 44 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -68.54 369.78 4.00 -64.55 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.03 Total: 24.68 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 4.17 Total: -29.88 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.97 Total: -84.97 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 1.81 Total: 52.73 kcal Total: -68.54 4.00 -64.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194655594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.101 kcal (2) G-P(sol) polarization free energy of solvation -68.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds