Wall clock time and date at job start Tue Mar 31 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47298 * 2 1 4 4 C 1.53000 * 109.47453 * 179.97438 * 3 2 1 5 5 C 1.50692 * 109.47601 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99823 * 89.99702 * 5 4 3 7 7 C 1.38235 * 120.00126 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99918 * 0.02828 * 7 6 5 9 9 C 1.50696 * 120.00046 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46941 * 90.00416 * 9 8 7 11 11 O 1.21281 * 120.00311 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99965 * 180.02562 * 10 9 8 13 13 C 1.46506 * 120.00067 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.46943 * 34.99959 * 13 12 10 15 15 C 1.53000 * 109.47074 * 275.00178 * 13 12 10 16 16 C 1.50696 * 109.46871 * 154.99639 * 13 12 10 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 13 12 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38237 * 120.00129 * 0.25509 * 8 7 6 25 25 C 1.38234 * 119.99923 * 359.46383 * 24 8 7 26 26 H 1.08996 * 109.47408 * 300.00386 * 1 2 3 27 27 H 1.09004 * 109.46987 * 60.00166 * 1 2 3 28 28 H 1.09001 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47230 * 239.99667 * 2 1 3 30 30 H 1.08998 * 109.47085 * 120.00288 * 2 1 3 31 31 H 1.09004 * 109.46848 * 60.00026 * 3 2 1 32 32 H 1.08998 * 109.47288 * 300.00164 * 3 2 1 33 33 H 1.09005 * 109.46857 * 59.99800 * 4 3 2 34 34 H 1.08998 * 109.47302 * 300.00516 * 4 3 2 35 35 H 1.07999 * 119.99946 * 359.97438 * 6 5 4 36 36 H 1.07998 * 120.00365 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47502 * 329.99903 * 9 8 7 38 38 H 1.09005 * 109.47488 * 210.00029 * 9 8 7 39 39 H 0.97000 * 119.99961 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.46637 * 179.97438 * 15 13 12 41 41 H 1.08997 * 109.46749 * 299.99711 * 15 13 12 42 42 H 1.08996 * 109.47024 * 59.99854 * 15 13 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.07997 * 120.00152 * 179.73132 * 24 8 7 45 45 H 1.07995 * 120.00475 * 180.29631 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8632 0.0000 6 6 4.3023 3.5156 1.1969 7 6 4.7636 4.8186 1.1964 8 6 4.9946 5.4696 -0.0010 9 6 5.4970 6.8903 -0.0016 10 6 7.0040 6.8902 -0.0010 11 8 7.6103 5.8399 0.0002 12 7 7.6780 8.0574 -0.0009 13 6 9.1430 8.0573 0.0002 14 1 9.5067 7.2152 -0.5887 15 6 9.6519 7.9320 1.4377 16 6 9.6458 9.3447 -0.6004 17 1 8.9444 10.0888 -0.9477 18 6 11.0016 9.5727 -0.7064 19 7 11.4404 10.6964 -1.2300 20 14 12.2148 8.2854 -0.1062 21 1 12.5362 8.5357 1.3218 22 1 11.6145 6.9346 -0.2491 23 1 13.4583 8.3625 -0.9143 24 6 4.7592 4.8193 -1.1979 25 6 4.3034 3.5142 -1.1974 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 4.1214 3.0071 2.1324 36 1 4.9436 5.3282 2.1315 37 1 5.1333 7.4048 0.8879 38 1 5.1341 7.4038 -0.8920 39 1 7.1930 8.8975 -0.0015 40 1 10.7419 7.9314 1.4384 41 1 9.2882 8.7740 2.0265 42 1 9.2882 7.0008 1.8719 43 1 12.3942 10.8569 -1.3043 44 1 4.9355 5.3293 -2.1334 45 1 4.1240 3.0045 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194655610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:53 Heat of formation + Delta-G solvation = -61.021953 kcal Electronic energy + Delta-G solvation = -22001.119348 eV Core-core repulsion = 18788.461850 eV Total energy + Delta-G solvation = -3212.657498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00142 -39.92320 -37.01431 -36.56600 -34.40932 -34.07464 -32.06673 -31.77369 -30.64935 -27.77773 -27.20780 -24.67782 -23.60601 -23.07028 -21.98447 -21.50322 -21.08306 -19.09319 -17.72651 -17.47512 -16.93798 -16.82843 -16.14800 -16.07107 -15.74431 -15.49867 -14.95705 -14.89604 -14.66058 -14.26565 -14.18573 -14.06339 -13.85478 -13.71913 -13.44881 -13.28249 -12.92191 -12.81069 -12.77006 -12.31392 -12.16153 -12.13396 -11.96323 -11.74979 -11.63442 -11.46747 -11.37040 -11.28320 -10.88334 -10.75288 -9.85182 -9.75551 -9.35876 -8.39017 -6.44382 0.43681 0.56704 1.25705 1.34152 1.43686 1.81112 2.25041 2.47465 2.96647 2.98435 3.72947 3.88316 3.90819 4.11339 4.15063 4.17777 4.23893 4.34732 4.38978 4.45750 4.56636 4.56915 4.61158 4.67592 4.71236 4.80431 4.81607 4.85435 4.98969 4.99634 5.00310 5.16229 5.23323 5.24142 5.32443 5.33158 5.40832 5.43256 5.52077 5.55020 5.67070 5.73850 5.76965 6.13863 6.18143 6.57490 6.91387 7.19263 7.50265 8.76083 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.040553 B = 0.002556 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.287059 B =10951.839404 C =11116.060445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.077 4.077 5 C -0.091 4.091 6 C -0.126 4.126 7 C -0.117 4.117 8 C -0.081 4.081 9 C -0.094 4.094 10 C 0.503 3.497 11 O -0.591 6.591 12 N -0.703 5.703 13 C 0.241 3.759 14 H 0.018 0.982 15 C -0.154 4.154 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.028 3.972 19 N -0.932 5.932 20 Si 0.939 3.061 21 H -0.259 1.259 22 H -0.266 1.266 23 H -0.292 1.292 24 C -0.120 4.120 25 C -0.127 4.127 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.409 0.591 40 H 0.039 0.961 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.270 0.730 44 H 0.123 0.877 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.536 -17.082 4.526 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.114 4.114 5 C -0.091 4.091 6 C -0.144 4.144 7 C -0.135 4.135 8 C -0.082 4.082 9 C -0.133 4.133 10 C 0.291 3.709 11 O -0.473 6.473 12 N -0.353 5.353 13 C 0.136 3.864 14 H 0.036 0.964 15 C -0.212 4.212 16 C -0.570 4.570 17 H 0.077 0.923 18 C -0.172 4.172 19 N -0.571 5.571 20 Si 0.766 3.234 21 H -0.185 1.185 22 H -0.191 1.191 23 H -0.219 1.219 24 C -0.138 4.138 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.244 0.756 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.141 0.859 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.949 -17.694 4.476 27.784 hybrid contribution 0.984 0.409 -0.030 1.066 sum -19.964 -17.285 4.446 26.779 Atomic orbital electron populations 1.21780 0.95561 1.01926 1.01827 1.21544 0.96145 0.96148 1.02337 1.21543 0.93559 0.97296 1.02117 1.20626 0.96164 0.91277 1.03319 1.20140 0.98893 0.97115 0.92933 1.21216 1.00180 0.94608 0.98428 1.21197 0.99057 0.95588 0.97646 1.19479 0.99234 0.95473 0.93990 1.20717 0.89418 0.95769 1.07395 1.21250 0.91137 0.83191 0.75316 1.90651 1.71666 1.32851 1.52086 1.46053 1.07357 1.08639 1.73214 1.18729 0.78673 0.95841 0.93162 0.96405 1.22328 0.99432 1.00710 0.98721 1.21266 0.92801 1.02171 1.40727 0.92331 1.25556 0.99977 0.96900 0.94729 1.69974 1.15408 1.25906 1.45838 0.86010 0.78346 0.80391 0.78633 1.18490 1.19105 1.21920 1.21198 0.99244 0.95660 0.97710 1.21200 1.00295 0.94551 0.98477 0.92763 0.92842 0.92217 0.91771 0.91676 0.92111 0.92241 0.90696 0.90526 0.84571 0.85427 0.85425 0.86009 0.75583 0.94264 0.91472 0.93755 0.92061 0.85899 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.40 5.93 30.59 0.18 -1.21 16 3 C -0.11 -1.46 5.20 30.59 0.16 -1.31 16 4 C -0.08 -1.22 5.34 29.85 0.16 -1.06 16 5 C -0.09 -1.97 5.13 -19.87 -0.10 -2.07 16 6 C -0.13 -2.86 9.70 22.27 0.22 -2.64 16 7 C -0.12 -2.95 9.70 22.27 0.22 -2.73 16 8 C -0.08 -2.19 4.37 -19.87 -0.09 -2.28 16 9 C -0.09 -2.34 5.83 29.10 0.17 -2.17 16 10 C 0.50 18.41 7.79 87.66 0.68 19.10 16 11 O -0.59 -27.02 15.70 -3.03 -0.05 -27.07 16 12 N -0.70 -27.20 5.07 -446.08 -2.26 -29.46 16 13 C 0.24 11.55 2.15 44.24 0.10 11.64 16 14 H 0.02 0.97 6.63 -2.38 -0.02 0.96 16 15 C -0.15 -6.76 8.97 71.98 0.65 -6.12 16 16 C -0.53 -29.05 9.31 25.60 0.24 -28.81 16 17 H 0.06 3.38 7.98 -2.91 -0.02 3.35 16 18 C 0.03 1.60 5.45 84.66 0.46 2.06 16 19 N -0.93 -55.97 13.96 21.45 0.30 -55.67 16 20 Si 0.94 45.31 24.37 68.60 1.67 46.99 16 21 H -0.26 -11.73 6.87 99.48 0.68 -11.05 16 22 H -0.27 -12.93 6.53 99.48 0.65 -12.28 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 C -0.12 -3.16 9.70 22.27 0.22 -2.94 16 25 C -0.13 -2.98 9.70 22.27 0.22 -2.76 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.13 8.09 -2.38 -0.02 1.11 16 34 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 37 H 0.13 2.43 8.09 -2.39 -0.02 2.41 16 38 H 0.12 2.49 8.08 -2.38 -0.02 2.47 16 39 H 0.41 13.48 8.54 -92.71 -0.79 12.69 16 40 H 0.04 1.77 3.28 -2.39 -0.01 1.76 16 41 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 45 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -69.62 366.39 3.93 -65.69 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.08 Total: 23.71 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 4.18 Total: -24.19 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -1.96 Total: -85.13 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.67 Total: 46.99 kcal Total: -69.62 3.93 -65.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194655610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.672 kcal (2) G-P(sol) polarization free energy of solvation -69.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds