Wall clock time and date at job start Tue Mar 31 2020 06:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46946 * 2 1 4 4 C 1.53004 * 109.47293 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47671 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47355 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46977 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47266 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99698 * 354.83556 * 8 7 6 10 10 N 1.34779 * 120.00551 * 174.84079 * 8 7 6 11 11 C 1.37145 * 119.99420 * 5.67082 * 10 8 7 12 12 H 1.07998 * 119.99633 * 55.67594 * 11 10 8 13 13 C 1.38885 * 120.00095 * 235.66821 * 11 10 8 14 14 N 1.31432 * 119.99822 * 9.25400 * 13 11 10 15 15 Si 1.86797 * 120.00347 * 189.25114 * 13 11 10 16 16 H 1.48497 * 109.46879 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47324 * 119.99950 * 15 13 11 18 18 H 1.48496 * 109.47473 * 240.00378 * 15 13 11 19 19 C 1.39785 * 120.00130 * 185.67673 * 10 8 7 20 20 C 1.38961 * 120.07283 * 175.18842 * 19 10 8 21 21 C 1.38081 * 119.91704 * 179.97438 * 20 19 10 22 22 C 1.38303 * 120.08186 * 359.97438 * 21 20 19 23 23 C 1.38313 * 120.15414 * 0.02562 * 22 21 20 24 24 C 1.38080 * 120.07962 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47589 * 300.00153 * 1 2 3 27 27 H 1.09000 * 109.46738 * 60.00561 * 1 2 3 28 28 H 1.09005 * 109.47487 * 239.99389 * 2 1 3 29 29 H 1.09006 * 109.47103 * 119.99682 * 2 1 3 30 30 H 1.09000 * 109.47496 * 59.99898 * 3 2 1 31 31 H 1.09000 * 109.46944 * 299.99313 * 3 2 1 32 32 H 1.09005 * 109.47012 * 59.99467 * 4 3 2 33 33 H 1.09001 * 109.47031 * 300.00679 * 4 3 2 34 34 H 1.09003 * 109.46519 * 59.99766 * 5 4 3 35 35 H 1.08998 * 109.47263 * 300.00737 * 5 4 3 36 36 H 1.08998 * 109.47096 * 60.00649 * 6 5 4 37 37 H 1.09000 * 109.47046 * 300.00022 * 6 5 4 38 38 H 1.09000 * 109.47496 * 60.00294 * 7 6 5 39 39 H 1.09006 * 109.46959 * 300.00165 * 7 6 5 40 40 H 0.96994 * 119.99721 * 184.98388 * 14 13 11 41 41 H 1.07998 * 120.04322 * 359.69957 * 20 19 10 42 42 H 1.08007 * 119.96193 * 179.97438 * 21 20 19 43 43 H 1.08004 * 119.92595 * 179.97438 * 22 21 20 44 44 H 1.08004 * 119.95761 * 180.02562 * 23 22 21 45 45 H 1.08000 * 120.04146 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0013 7 6 6.1199 4.3275 0.0013 8 6 7.6269 4.3276 0.0019 9 8 8.2333 3.2816 0.0969 10 7 8.3009 5.4901 -0.1029 11 6 7.6201 6.6806 -0.0930 12 1 6.9623 6.9195 0.7294 13 6 7.7769 7.5789 -1.1406 14 7 8.4288 7.2184 -2.2234 15 14 7.0611 9.2994 -1.0107 16 1 6.3798 9.4544 0.2996 17 1 8.1532 10.2996 -1.1215 18 1 6.0819 9.5122 -2.1065 19 6 9.6937 5.4822 -0.2218 20 6 10.3814 6.6715 -0.4303 21 6 11.7573 6.6601 -0.5468 22 6 12.4508 5.4670 -0.4557 23 6 11.7694 4.2814 -0.2483 24 6 10.3937 4.2853 -0.1308 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8908 34 1 3.7162 3.3993 0.8896 35 1 3.7170 3.3984 -0.8904 36 1 5.9741 2.3706 -0.8880 37 1 5.9726 2.3719 0.8920 38 1 5.7559 4.8417 0.8908 39 1 5.7573 4.8411 -0.8892 40 1 8.6011 7.8666 -2.9241 41 1 9.8402 7.6031 -0.5055 42 1 12.2926 7.5841 -0.7092 43 1 13.5269 5.4610 -0.5476 44 1 12.3143 3.3515 -0.1773 45 1 9.8622 3.3591 0.0307 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194952869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:14 Heat of formation + Delta-G solvation = -29.803475 kcal Electronic energy + Delta-G solvation = -22632.831331 eV Core-core repulsion = 19421.527568 eV Total energy + Delta-G solvation = -3211.303763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.68557 -37.37361 -36.50486 -35.00623 -33.95844 -31.94207 -30.73201 -29.58550 -28.75406 -26.45924 -25.15384 -23.15060 -21.64287 -21.16627 -20.93582 -20.38494 -19.23185 -17.62238 -16.10651 -16.03148 -15.55757 -15.17881 -14.91159 -14.45607 -14.05510 -14.01470 -13.67171 -13.19214 -13.05344 -12.97054 -12.78556 -12.35694 -12.05182 -11.90184 -11.87823 -11.60156 -11.44371 -11.27281 -11.15696 -11.04688 -10.90013 -10.81301 -10.63783 -10.51440 -10.44536 -10.26242 -10.13971 -10.00571 -9.21152 -8.73037 -8.07621 -7.76984 -6.86453 -6.29327 -4.53513 2.45538 2.59256 3.01946 3.12132 3.15313 3.78633 3.97117 4.47755 4.73505 4.77705 4.82762 4.98918 5.15429 5.18341 5.33845 5.40243 5.50622 5.65956 5.67206 5.78660 5.81438 5.88871 5.90807 5.94945 6.04620 6.07218 6.08546 6.17137 6.22563 6.27587 6.32619 6.40435 6.47013 6.72988 6.74034 6.76509 6.83393 6.97244 7.18499 7.25784 7.54085 7.64945 7.72616 7.81734 8.08655 8.46713 8.86263 9.28869 9.66724 10.48317 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.003667 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.299862 B = 7633.194108 C = 9139.203073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.103 4.103 7 C -0.116 4.116 8 C 0.493 3.507 9 O -0.569 6.569 10 N -0.387 5.387 11 C -0.365 4.365 12 H 0.093 0.907 13 C 0.055 3.945 14 N -0.842 5.842 15 Si 0.913 3.087 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.277 1.277 19 C 0.184 3.816 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.175 4.175 23 C -0.121 4.121 24 C -0.194 4.194 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.274 0.726 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.435 -5.634 2.953 10.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.156 4.156 8 C 0.286 3.714 9 O -0.454 6.454 10 N -0.094 5.094 11 C -0.493 4.493 12 H 0.111 0.889 13 C -0.154 4.154 14 N -0.474 5.474 15 Si 0.738 3.262 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.203 1.203 19 C 0.087 3.913 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.195 4.195 23 C -0.140 4.140 24 C -0.214 4.214 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.148 0.852 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.248 -6.077 2.770 10.613 hybrid contribution -0.124 1.243 -0.301 1.285 sum -8.372 -4.834 2.470 9.978 Atomic orbital electron populations 1.21783 0.96196 1.01313 1.01729 1.21553 0.95554 0.97347 1.01928 1.21640 0.95925 0.96319 1.01935 1.21605 0.94714 0.97372 1.02025 1.21610 0.95954 0.96199 1.01885 1.21360 0.93813 0.96188 1.02790 1.21352 0.92586 0.97440 1.04196 1.21038 0.90386 0.82827 0.77180 1.90156 1.68905 1.32923 1.53378 1.41054 1.02476 1.06009 1.59845 1.19353 1.28574 0.94972 1.06374 0.88942 1.25623 0.95704 1.00453 0.93662 1.70048 1.36783 1.34869 1.05692 0.86089 0.79261 0.81922 0.78914 1.18809 1.20125 1.20275 1.18321 0.84002 0.93452 0.95513 1.21032 0.92865 0.98576 1.00360 1.20763 0.94193 0.96949 1.02365 1.20778 0.98276 0.93410 1.07012 1.20868 0.94526 0.96800 1.01772 1.22815 0.94197 1.00550 1.03807 0.93034 0.92852 0.92827 0.92132 0.92156 0.92159 0.92117 0.92103 0.92129 0.92205 0.92082 0.91866 0.91788 0.89935 0.89006 0.91598 0.85150 0.87860 0.88246 0.87792 0.80826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.11 5.93 -26.73 -0.16 -1.27 16 3 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 4 C -0.12 -1.35 5.21 -26.73 -0.14 -1.49 16 5 C -0.12 -1.54 5.21 -26.73 -0.14 -1.68 16 6 C -0.10 -1.68 4.52 -26.73 -0.12 -1.80 16 7 C -0.12 -2.20 4.52 -27.88 -0.13 -2.32 16 8 C 0.49 11.62 7.57 -10.99 -0.08 11.54 16 9 O -0.57 -14.04 12.37 5.56 0.07 -13.97 16 10 N -0.39 -9.76 2.62 -58.98 -0.15 -9.92 16 11 C -0.37 -8.95 7.61 -14.94 -0.11 -9.06 16 12 H 0.09 2.15 7.85 -52.49 -0.41 1.74 16 13 C 0.06 1.33 3.49 -17.48 -0.06 1.27 16 14 N -0.84 -21.84 11.39 55.49 0.63 -21.21 16 15 Si 0.91 18.50 29.57 -169.99 -5.03 13.48 16 16 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 17 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 19 C 0.18 4.71 6.05 -83.70 -0.51 4.21 16 20 C -0.11 -2.63 7.87 -39.37 -0.31 -2.94 16 21 C -0.12 -2.67 10.04 -39.61 -0.40 -3.06 16 22 C -0.18 -3.57 10.04 -39.53 -0.40 -3.97 16 23 C -0.12 -2.58 10.04 -39.61 -0.40 -2.97 16 24 C -0.19 -4.71 9.06 -39.37 -0.36 -5.07 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.09 1.79 8.04 -51.93 -0.42 1.37 16 40 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 41 H 0.13 3.28 5.15 -52.49 -0.27 3.01 16 42 H 0.10 1.94 8.06 -52.48 -0.42 1.51 16 43 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 44 H 0.10 1.91 8.06 -52.48 -0.42 1.48 16 45 H 0.18 4.36 4.50 -56.37 -0.25 4.10 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -27.54 361.50 -9.78 -37.32 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -7.67 Total: 9.63 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -3.08 Total: -20.77 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.48 Total: -31.13 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.07 Total: -13.97 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.54 -9.78 -37.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194952869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.517 kcal (2) G-P(sol) polarization free energy of solvation -27.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds