Wall clock time and date at job start Tue Mar 31 2020 06:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46946 * 2 1 4 4 C 1.53004 * 109.47293 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47671 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47355 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46977 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47266 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99698 * 354.83556 * 8 7 6 10 10 N 1.34779 * 120.00551 * 174.84079 * 8 7 6 11 11 C 1.37145 * 119.99420 * 5.67082 * 10 8 7 12 12 H 1.07998 * 119.99633 * 55.67594 * 11 10 8 13 13 C 1.38885 * 120.00095 * 235.66821 * 11 10 8 14 14 N 1.31432 * 119.99822 * 9.25400 * 13 11 10 15 15 Si 1.86797 * 120.00347 * 189.25114 * 13 11 10 16 16 H 1.48497 * 109.46879 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47324 * 119.99950 * 15 13 11 18 18 H 1.48496 * 109.47473 * 240.00378 * 15 13 11 19 19 C 1.39785 * 120.00130 * 185.67673 * 10 8 7 20 20 C 1.38961 * 120.07283 * 175.18842 * 19 10 8 21 21 C 1.38081 * 119.91704 * 179.97438 * 20 19 10 22 22 C 1.38303 * 120.08186 * 359.97438 * 21 20 19 23 23 C 1.38313 * 120.15414 * 0.02562 * 22 21 20 24 24 C 1.38080 * 120.07962 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47589 * 300.00153 * 1 2 3 27 27 H 1.09000 * 109.46738 * 60.00561 * 1 2 3 28 28 H 1.09005 * 109.47487 * 239.99389 * 2 1 3 29 29 H 1.09006 * 109.47103 * 119.99682 * 2 1 3 30 30 H 1.09000 * 109.47496 * 59.99898 * 3 2 1 31 31 H 1.09000 * 109.46944 * 299.99313 * 3 2 1 32 32 H 1.09005 * 109.47012 * 59.99467 * 4 3 2 33 33 H 1.09001 * 109.47031 * 300.00679 * 4 3 2 34 34 H 1.09003 * 109.46519 * 59.99766 * 5 4 3 35 35 H 1.08998 * 109.47263 * 300.00737 * 5 4 3 36 36 H 1.08998 * 109.47096 * 60.00649 * 6 5 4 37 37 H 1.09000 * 109.47046 * 300.00022 * 6 5 4 38 38 H 1.09000 * 109.47496 * 60.00294 * 7 6 5 39 39 H 1.09006 * 109.46959 * 300.00165 * 7 6 5 40 40 H 0.96994 * 119.99721 * 184.98388 * 14 13 11 41 41 H 1.07998 * 120.04322 * 359.69957 * 20 19 10 42 42 H 1.08007 * 119.96193 * 179.97438 * 21 20 19 43 43 H 1.08004 * 119.92595 * 179.97438 * 22 21 20 44 44 H 1.08004 * 119.95761 * 180.02562 * 23 22 21 45 45 H 1.08000 * 120.04146 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0013 7 6 6.1199 4.3275 0.0013 8 6 7.6269 4.3276 0.0019 9 8 8.2333 3.2816 0.0969 10 7 8.3009 5.4901 -0.1029 11 6 7.6201 6.6806 -0.0930 12 1 6.9623 6.9195 0.7294 13 6 7.7769 7.5789 -1.1406 14 7 8.4288 7.2184 -2.2234 15 14 7.0611 9.2994 -1.0107 16 1 6.3798 9.4544 0.2996 17 1 8.1532 10.2996 -1.1215 18 1 6.0819 9.5122 -2.1065 19 6 9.6937 5.4822 -0.2218 20 6 10.3814 6.6715 -0.4303 21 6 11.7573 6.6601 -0.5468 22 6 12.4508 5.4670 -0.4557 23 6 11.7694 4.2814 -0.2483 24 6 10.3937 4.2853 -0.1308 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8908 34 1 3.7162 3.3993 0.8896 35 1 3.7170 3.3984 -0.8904 36 1 5.9741 2.3706 -0.8880 37 1 5.9726 2.3719 0.8920 38 1 5.7559 4.8417 0.8908 39 1 5.7573 4.8411 -0.8892 40 1 8.6011 7.8666 -2.9241 41 1 9.8402 7.6031 -0.5055 42 1 12.2926 7.5841 -0.7092 43 1 13.5269 5.4610 -0.5476 44 1 12.3143 3.3515 -0.1773 45 1 9.8622 3.3591 0.0307 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194952869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:14 Heat of formation + Delta-G solvation = -40.720876 kcal Electronic energy + Delta-G solvation = -22633.304745 eV Core-core repulsion = 19421.527568 eV Total energy + Delta-G solvation = -3211.777177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48604 -39.06839 -37.50796 -36.81420 -35.05922 -33.80972 -31.94268 -31.33150 -30.32567 -27.66377 -26.96312 -24.39181 -23.24776 -22.66368 -21.85387 -21.63728 -21.00037 -19.40653 -17.87537 -17.43213 -17.01358 -16.82530 -16.30115 -16.09558 -15.34664 -15.26249 -14.92495 -14.70069 -14.58349 -14.20190 -14.12463 -13.99330 -13.54195 -13.31746 -13.05266 -12.99213 -12.85383 -12.77402 -12.71646 -12.46624 -12.08856 -12.01579 -11.91244 -11.75526 -11.70783 -11.45179 -11.28948 -11.24532 -11.01682 -10.55214 -9.89320 -9.53953 -8.70831 -8.12713 -6.44290 0.69432 0.81041 1.40920 1.45634 1.58195 2.00908 2.25981 2.82588 2.93642 3.36151 3.81351 4.02217 4.03979 4.20826 4.23076 4.30495 4.32418 4.38112 4.48807 4.55515 4.61474 4.76455 4.78723 4.83747 4.89679 4.95844 4.99338 5.04978 5.06203 5.09344 5.15831 5.22216 5.25556 5.34750 5.36157 5.38608 5.43689 5.48800 5.54696 5.58794 5.80084 5.89216 5.90904 6.06570 6.24744 6.63494 7.00373 7.44939 7.82770 8.65510 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.003667 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.299862 B = 7633.194108 C = 9139.203073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.094 4.094 7 C -0.106 4.106 8 C 0.474 3.526 9 O -0.589 6.589 10 N -0.401 5.401 11 C -0.378 4.378 12 H 0.100 0.900 13 C 0.021 3.979 14 N -0.879 5.879 15 Si 0.980 3.020 16 H -0.253 1.253 17 H -0.275 1.275 18 H -0.276 1.276 19 C 0.150 3.850 20 C -0.129 4.129 21 C -0.124 4.124 22 C -0.167 4.167 23 C -0.120 4.120 24 C -0.220 4.220 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.274 0.726 41 H 0.117 0.883 42 H 0.133 0.867 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.607 -5.093 3.351 10.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.154 4.154 4 C -0.154 4.154 5 C -0.148 4.148 6 C -0.132 4.132 7 C -0.146 4.146 8 C 0.268 3.732 9 O -0.475 6.475 10 N -0.109 5.109 11 C -0.505 4.505 12 H 0.117 0.883 13 C -0.185 4.185 14 N -0.512 5.512 15 Si 0.802 3.198 16 H -0.176 1.176 17 H -0.201 1.201 18 H -0.201 1.201 19 C 0.054 3.946 20 C -0.150 4.150 21 C -0.143 4.143 22 C -0.185 4.185 23 C -0.138 4.138 24 C -0.240 4.240 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.134 0.866 42 H 0.150 0.850 43 H 0.160 0.840 44 H 0.153 0.847 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.425 -5.544 3.181 10.575 hybrid contribution 0.049 1.027 -0.417 1.110 sum -8.376 -4.516 2.764 9.909 Atomic orbital electron populations 1.21775 0.95312 1.01913 1.01931 1.21551 0.96344 0.96596 1.01936 1.21602 0.94510 0.97132 1.02195 1.21571 0.95954 0.96055 1.01859 1.21549 0.93151 0.97606 1.02536 1.21290 0.96203 0.94029 1.01672 1.21359 0.89451 0.99330 1.04420 1.21865 0.92239 0.82362 0.76687 1.90134 1.69773 1.33397 1.54213 1.41342 1.02813 1.06652 1.60070 1.19655 1.28768 0.95219 1.06812 0.88297 1.26377 0.95499 1.03795 0.92862 1.70164 1.38331 1.36127 1.06561 0.85078 0.78385 0.77080 0.79215 1.17625 1.20072 1.20135 1.18719 0.84606 0.94421 0.96891 1.21072 0.94275 0.97671 1.01964 1.21154 0.93247 0.98911 1.00995 1.21216 1.00335 0.92248 1.04746 1.21248 0.93482 0.98810 1.00297 1.22850 0.95799 0.99763 1.05556 0.92281 0.92549 0.92736 0.92302 0.92035 0.91673 0.92064 0.92595 0.92054 0.91059 0.91869 0.93524 0.92360 0.88414 0.89683 0.91655 0.86565 0.84963 0.84002 0.84701 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.13 -2.07 5.93 30.59 0.18 -1.88 16 3 C -0.12 -2.13 5.21 30.59 0.16 -1.97 16 4 C -0.12 -2.54 5.21 30.59 0.16 -2.38 16 5 C -0.11 -2.78 5.21 30.59 0.16 -2.62 16 6 C -0.09 -3.08 4.52 30.59 0.14 -2.94 16 7 C -0.11 -4.10 4.52 29.85 0.14 -3.96 16 8 C 0.47 23.19 7.57 87.66 0.66 23.86 16 9 O -0.59 -30.33 12.37 -3.03 -0.04 -30.37 16 10 N -0.40 -20.90 2.62 -458.90 -1.20 -22.10 16 11 C -0.38 -18.82 7.61 84.02 0.64 -18.18 16 12 H 0.10 4.64 7.85 -2.91 -0.02 4.62 16 13 C 0.02 1.01 3.49 84.91 0.30 1.30 16 14 N -0.88 -46.47 11.39 21.65 0.25 -46.23 16 15 Si 0.98 37.84 29.57 68.60 2.03 39.87 16 16 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 17 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 18 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 19 C 0.15 7.89 6.05 38.22 0.23 8.13 16 20 C -0.13 -6.36 7.87 22.41 0.18 -6.18 16 21 C -0.12 -5.16 10.04 22.25 0.22 -4.94 16 22 C -0.17 -6.33 10.04 22.30 0.22 -6.10 16 23 C -0.12 -4.94 10.04 22.25 0.22 -4.72 16 24 C -0.22 -10.88 9.06 22.41 0.20 -10.67 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.96 8.04 -2.39 -0.02 1.95 16 38 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.08 3.39 8.04 -2.38 -0.02 3.37 16 40 H 0.27 13.65 8.32 -92.71 -0.77 12.88 16 41 H 0.12 5.96 5.15 -2.91 -0.02 5.95 16 42 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 44 H 0.14 4.62 8.06 -2.91 -0.02 4.59 16 45 H 0.16 8.33 4.50 -64.43 -0.29 8.04 16 Total: -1.00 -60.67 361.50 6.22 -54.45 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: 0.66 Total: 39.07 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 4.53 Total: -34.68 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -0.96 Total: -68.33 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.04 Total: -30.37 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -60.67 6.22 -54.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194952869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.726 kcal (2) G-P(sol) polarization free energy of solvation -60.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds