Wall clock time and date at job start Tue Mar 31 2020 06:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47075 * 2 1 4 4 C 1.53004 * 109.47345 * 240.00103 * 2 1 3 5 5 C 1.50703 * 109.46944 * 119.99861 * 2 1 3 6 6 C 1.38230 * 119.99810 * 60.00431 * 5 2 1 7 7 C 1.38234 * 120.00263 * 180.27541 * 6 5 2 8 8 C 1.38242 * 119.99622 * 359.46314 * 7 6 5 9 9 C 1.50690 * 120.00124 * 180.28050 * 8 7 6 10 10 C 1.53004 * 109.47192 * 275.67707 * 9 8 7 11 11 C 1.53000 * 109.47453 * 35.67728 * 9 8 7 12 12 N 1.46500 * 109.47554 * 155.68259 * 9 8 7 13 13 C 1.34774 * 120.00680 * 178.19849 * 12 9 8 14 14 O 1.21686 * 119.99645 * 359.97438 * 13 12 9 15 15 C 1.46375 * 120.00176 * 179.97438 * 13 12 9 16 16 H 1.07996 * 120.00319 * 6.15639 * 15 13 12 17 17 C 1.40052 * 119.99760 * 186.15942 * 15 13 12 18 18 N 1.30668 * 119.99935 * 353.75445 * 17 15 13 19 19 Si 1.86802 * 119.99918 * 173.75514 * 17 15 13 20 20 H 1.48500 * 109.46663 * 94.96960 * 19 17 15 21 21 H 1.48497 * 109.47043 * 214.97214 * 19 17 15 22 22 H 1.48504 * 109.47021 * 334.97470 * 19 17 15 23 23 C 1.38241 * 119.99703 * 0.56109 * 8 7 6 24 24 C 1.38230 * 120.00139 * 240.01830 * 5 2 1 25 25 H 1.08999 * 109.47096 * 300.00106 * 1 2 3 26 26 H 1.09006 * 109.46751 * 59.99717 * 1 2 3 27 27 H 1.09001 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46971 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47328 * 299.99799 * 3 2 1 30 30 H 1.08999 * 109.47245 * 59.99986 * 3 2 1 31 31 H 1.08995 * 109.46793 * 300.00247 * 4 2 1 32 32 H 1.08998 * 109.46740 * 59.99803 * 4 2 1 33 33 H 1.09000 * 109.47186 * 179.97438 * 4 2 1 34 34 H 1.08002 * 120.00079 * 359.97438 * 6 5 2 35 35 H 1.08001 * 120.00608 * 179.72402 * 7 6 5 36 36 H 1.09005 * 109.47071 * 60.00258 * 10 9 8 37 37 H 1.08997 * 109.47598 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47701 * 300.00319 * 10 9 8 39 39 H 1.08998 * 109.46919 * 59.99972 * 11 9 8 40 40 H 1.08998 * 109.47539 * 179.97438 * 11 9 8 41 41 H 1.09004 * 109.46843 * 300.00394 * 11 9 8 42 42 H 0.97004 * 119.99660 * 358.19510 * 12 9 8 43 43 H 0.96998 * 120.00115 * 180.02562 * 18 17 15 44 44 H 1.07997 * 119.99916 * 179.72354 * 23 8 7 45 45 H 1.08004 * 119.99926 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 1.6984 -2.0338 1.4492 7 6 2.1544 -2.6839 2.5807 8 6 2.9535 -2.0136 3.4881 9 6 3.4559 -2.7240 4.7184 10 6 2.3891 -2.6635 5.8136 11 6 3.7544 -4.1854 4.3775 12 7 4.6798 -2.0734 5.1926 13 6 5.2906 -2.5182 6.3086 14 8 4.8253 -3.4601 6.9226 15 6 6.5138 -1.8683 6.7820 16 1 6.8721 -0.9727 6.2965 17 6 7.2195 -2.4081 7.8646 18 7 6.7241 -3.4182 8.5291 19 14 8.8691 -1.6840 8.3586 20 1 8.6681 -0.6885 9.4420 21 1 9.7609 -2.7685 8.8420 22 1 9.4895 -1.0193 7.1844 23 6 3.2870 -0.6900 3.2696 24 6 2.8267 -0.0385 2.1406 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1301 -0.7208 -1.2495 34 1 1.0772 -2.5586 0.7384 35 1 1.8898 -3.7166 2.7539 36 1 1.4784 -3.1477 5.4609 37 1 2.7522 -3.1778 6.7034 38 1 2.1763 -1.6225 6.0565 39 1 4.5144 -4.2285 3.5973 40 1 4.1182 -4.6991 5.2673 41 1 2.8437 -4.6695 4.0247 42 1 5.0506 -1.3223 4.7033 43 1 7.2126 -3.7919 9.2791 44 1 3.9077 -0.1650 3.9806 45 1 3.0871 0.9957 1.9701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259150090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:33 Heat of formation + Delta-G solvation = -31.240691 kcal Electronic energy + Delta-G solvation = -23309.905937 eV Core-core repulsion = 20098.539851 eV Total energy + Delta-G solvation = -3211.366086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07932 -38.22222 -36.34901 -34.15559 -32.35581 -31.30280 -30.21994 -28.75710 -27.49188 -27.40381 -26.49338 -26.02683 -23.32851 -22.09433 -20.66059 -19.35540 -18.41197 -17.62745 -16.30247 -15.32202 -15.28735 -14.68306 -14.56743 -14.40415 -13.96404 -13.74038 -13.43582 -13.28818 -13.17351 -12.76586 -12.48743 -12.38701 -12.30406 -12.09938 -11.86867 -11.75359 -11.59018 -11.33222 -11.17900 -11.05338 -10.97606 -10.89134 -10.87266 -10.47628 -10.43974 -10.30329 -10.19011 -10.07797 -8.82196 -8.69628 -8.32639 -7.44730 -7.43133 -6.16179 -4.60840 1.55720 1.62093 3.14489 3.22206 3.25898 3.94553 4.12463 4.50976 4.60751 4.63861 4.82148 4.86489 5.09669 5.19009 5.20121 5.21416 5.40801 5.44380 5.59680 5.62315 5.66765 5.70561 5.72057 5.78844 5.81242 5.87903 5.91770 6.06152 6.10984 6.14917 6.19956 6.23446 6.32472 6.43070 6.49548 6.65892 6.69574 6.77851 6.88995 7.14581 7.17498 7.24140 7.45853 7.95052 8.17750 8.37023 9.05320 9.58616 10.62363 10.82309 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026178 B = 0.003600 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.344862 B = 7775.939130 C = 8425.290480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.084 4.084 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.069 4.069 9 C 0.222 3.778 10 C -0.152 4.152 11 C -0.155 4.155 12 N -0.760 5.760 13 C 0.560 3.440 14 O -0.574 6.574 15 C -0.547 4.547 16 H 0.065 0.935 17 C 0.090 3.910 18 N -0.767 5.767 19 Si 0.904 3.096 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.114 4.114 24 C -0.119 4.119 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.379 0.621 43 H 0.267 0.733 44 H 0.125 0.875 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.800 6.436 -16.540 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.084 4.084 6 C -0.134 4.134 7 C -0.131 4.131 8 C -0.070 4.070 9 C 0.134 3.866 10 C -0.210 4.210 11 C -0.213 4.213 12 N -0.416 5.416 13 C 0.364 3.636 14 O -0.457 6.457 15 C -0.584 4.584 16 H 0.084 0.916 17 C -0.130 4.130 18 N -0.396 5.396 19 Si 0.729 3.271 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.132 4.132 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.212 0.788 43 H 0.078 0.922 44 H 0.143 0.857 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.121 5.599 -15.924 19.682 hybrid contribution 1.039 0.753 -0.012 1.283 sum -9.081 6.352 -15.936 19.411 Atomic orbital electron populations 1.21883 0.93966 1.01961 1.01641 1.19459 0.95475 0.94950 0.92892 1.21958 1.01306 0.95092 1.01725 1.21882 1.01328 1.00153 0.96113 1.19697 0.98652 0.94167 0.95921 1.20856 1.00676 0.94291 0.97559 1.21020 0.98117 0.99959 0.94011 1.20202 0.96751 0.94180 0.95860 1.18739 0.86683 0.91714 0.89445 1.22199 0.96622 1.01477 1.00729 1.22240 1.00042 0.96067 1.02922 1.46389 1.26891 1.37576 1.30740 1.18100 0.83972 0.83417 0.78085 1.90518 1.66712 1.30871 1.57598 1.20887 1.08682 1.12611 1.16267 0.91642 1.25663 0.98295 0.94033 0.95004 1.70014 1.35775 1.19056 1.14718 0.86417 0.82270 0.79169 0.79255 1.19899 1.20456 1.18916 1.21073 1.00125 0.94479 0.97520 1.21105 0.98331 0.99894 0.94331 0.92509 0.92639 0.92494 0.92204 0.92646 0.92251 0.92489 0.92642 0.92468 0.86634 0.85944 0.93808 0.89010 0.93630 0.93512 0.89577 0.93525 0.78804 0.92215 0.85690 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.29 37.16 0.31 -0.86 16 2 C -0.03 -0.26 0.85 -155.65 -0.13 -0.39 16 3 C -0.14 -1.23 7.13 37.16 0.27 -0.96 16 4 C -0.14 -1.19 8.29 37.16 0.31 -0.88 16 5 C -0.08 -1.01 4.76 -104.63 -0.50 -1.51 16 6 C -0.12 -1.44 8.71 -39.59 -0.34 -1.79 16 7 C -0.11 -1.62 9.15 -39.58 -0.36 -1.98 16 8 C -0.07 -1.14 4.80 -104.62 -0.50 -1.64 16 9 C 0.22 4.32 0.89 -132.97 -0.12 4.20 16 10 C -0.15 -3.03 8.35 37.16 0.31 -2.72 16 11 C -0.15 -3.02 7.88 37.16 0.29 -2.72 16 12 N -0.76 -16.97 4.86 -50.08 -0.24 -17.21 16 13 C 0.56 15.49 7.16 -12.99 -0.09 15.39 16 14 O -0.57 -17.52 11.25 5.20 0.06 -17.46 16 15 C -0.55 -15.34 9.54 -35.63 -0.34 -15.68 16 16 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 17 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 18 N -0.77 -22.68 11.85 55.55 0.66 -22.02 16 19 Si 0.90 20.13 29.56 -169.99 -5.03 15.11 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 23 C -0.11 -1.74 9.02 -39.58 -0.36 -2.09 16 24 C -0.12 -1.55 8.98 -39.59 -0.36 -1.90 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 28 H 0.06 0.52 7.51 -51.93 -0.39 0.13 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 31 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.12 1.20 7.10 -52.49 -0.37 0.83 16 35 H 0.12 1.64 6.35 -52.49 -0.33 1.30 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 2.17 6.03 -51.93 -0.31 1.86 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 2.01 6.30 -51.93 -0.33 1.68 16 41 H 0.05 0.76 6.52 -51.93 -0.34 0.42 16 42 H 0.38 7.69 6.39 -40.82 -0.26 7.43 16 43 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 44 H 0.13 1.92 6.42 -52.49 -0.34 1.58 16 45 H 0.12 1.36 5.90 -52.48 -0.31 1.05 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -31.88 350.24 -8.06 -39.94 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.07 Total: 9.53 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -1.72 Total: -13.15 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.41 Total: -39.24 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.06 Total: -17.46 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.88 -8.06 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259150090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.699 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds