Wall clock time and date at job start Tue Mar 31 2020 06:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47075 * 2 1 4 4 C 1.53004 * 109.47345 * 240.00103 * 2 1 3 5 5 C 1.50703 * 109.46944 * 119.99861 * 2 1 3 6 6 C 1.38230 * 119.99810 * 60.00431 * 5 2 1 7 7 C 1.38234 * 120.00263 * 180.27541 * 6 5 2 8 8 C 1.38242 * 119.99622 * 359.46314 * 7 6 5 9 9 C 1.50690 * 120.00124 * 180.28050 * 8 7 6 10 10 C 1.53004 * 109.47192 * 275.67707 * 9 8 7 11 11 C 1.53000 * 109.47453 * 35.67728 * 9 8 7 12 12 N 1.46500 * 109.47554 * 155.68259 * 9 8 7 13 13 C 1.34774 * 120.00680 * 178.19849 * 12 9 8 14 14 O 1.21686 * 119.99645 * 359.97438 * 13 12 9 15 15 C 1.46375 * 120.00176 * 179.97438 * 13 12 9 16 16 H 1.07996 * 120.00319 * 6.15639 * 15 13 12 17 17 C 1.40052 * 119.99760 * 186.15942 * 15 13 12 18 18 N 1.30668 * 119.99935 * 353.75445 * 17 15 13 19 19 Si 1.86802 * 119.99918 * 173.75514 * 17 15 13 20 20 H 1.48500 * 109.46663 * 94.96960 * 19 17 15 21 21 H 1.48497 * 109.47043 * 214.97214 * 19 17 15 22 22 H 1.48504 * 109.47021 * 334.97470 * 19 17 15 23 23 C 1.38241 * 119.99703 * 0.56109 * 8 7 6 24 24 C 1.38230 * 120.00139 * 240.01830 * 5 2 1 25 25 H 1.08999 * 109.47096 * 300.00106 * 1 2 3 26 26 H 1.09006 * 109.46751 * 59.99717 * 1 2 3 27 27 H 1.09001 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46971 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47328 * 299.99799 * 3 2 1 30 30 H 1.08999 * 109.47245 * 59.99986 * 3 2 1 31 31 H 1.08995 * 109.46793 * 300.00247 * 4 2 1 32 32 H 1.08998 * 109.46740 * 59.99803 * 4 2 1 33 33 H 1.09000 * 109.47186 * 179.97438 * 4 2 1 34 34 H 1.08002 * 120.00079 * 359.97438 * 6 5 2 35 35 H 1.08001 * 120.00608 * 179.72402 * 7 6 5 36 36 H 1.09005 * 109.47071 * 60.00258 * 10 9 8 37 37 H 1.08997 * 109.47598 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47701 * 300.00319 * 10 9 8 39 39 H 1.08998 * 109.46919 * 59.99972 * 11 9 8 40 40 H 1.08998 * 109.47539 * 179.97438 * 11 9 8 41 41 H 1.09004 * 109.46843 * 300.00394 * 11 9 8 42 42 H 0.97004 * 119.99660 * 358.19510 * 12 9 8 43 43 H 0.96998 * 120.00115 * 180.02562 * 18 17 15 44 44 H 1.07997 * 119.99916 * 179.72354 * 23 8 7 45 45 H 1.08004 * 119.99926 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 1.6984 -2.0338 1.4492 7 6 2.1544 -2.6839 2.5807 8 6 2.9535 -2.0136 3.4881 9 6 3.4559 -2.7240 4.7184 10 6 2.3891 -2.6635 5.8136 11 6 3.7544 -4.1854 4.3775 12 7 4.6798 -2.0734 5.1926 13 6 5.2906 -2.5182 6.3086 14 8 4.8253 -3.4601 6.9226 15 6 6.5138 -1.8683 6.7820 16 1 6.8721 -0.9727 6.2965 17 6 7.2195 -2.4081 7.8646 18 7 6.7241 -3.4182 8.5291 19 14 8.8691 -1.6840 8.3586 20 1 8.6681 -0.6885 9.4420 21 1 9.7609 -2.7685 8.8420 22 1 9.4895 -1.0193 7.1844 23 6 3.2870 -0.6900 3.2696 24 6 2.8267 -0.0385 2.1406 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1301 -0.7208 -1.2495 34 1 1.0772 -2.5586 0.7384 35 1 1.8898 -3.7166 2.7539 36 1 1.4784 -3.1477 5.4609 37 1 2.7522 -3.1778 6.7034 38 1 2.1763 -1.6225 6.0565 39 1 4.5144 -4.2285 3.5973 40 1 4.1182 -4.6991 5.2673 41 1 2.8437 -4.6695 4.0247 42 1 5.0506 -1.3223 4.7033 43 1 7.2126 -3.7919 9.2791 44 1 3.9077 -0.1650 3.9806 45 1 3.0871 0.9957 1.9701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259150090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:33 Heat of formation + Delta-G solvation = -49.565971 kcal Electronic energy + Delta-G solvation = -23310.700581 eV Core-core repulsion = 20098.539851 eV Total energy + Delta-G solvation = -3212.160729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25557 -39.75236 -37.73448 -35.68170 -34.45833 -32.71572 -31.67886 -29.93135 -28.40311 -28.11998 -28.03950 -27.92686 -24.57853 -23.24815 -22.23403 -20.59968 -19.78847 -19.43396 -17.77128 -17.20756 -16.47491 -16.04267 -15.70577 -15.54883 -15.13189 -15.03651 -14.85327 -14.49666 -14.40424 -14.24241 -14.21225 -13.67282 -13.44799 -13.25443 -12.97099 -12.84078 -12.80644 -12.72665 -12.58279 -12.55893 -12.48405 -12.21276 -12.06668 -12.03757 -11.89786 -11.75427 -11.35079 -11.28181 -10.89230 -9.76927 -9.63311 -9.53642 -9.23492 -8.25002 -6.80644 0.45579 0.54880 1.39251 1.40490 1.55789 2.25214 2.52019 2.85532 3.12539 3.63105 3.67158 3.83316 3.85832 4.11252 4.17623 4.18652 4.29448 4.38074 4.44226 4.57472 4.63538 4.75538 4.79722 4.84202 4.89958 4.90082 4.95446 4.99994 5.06773 5.07481 5.08523 5.18566 5.21577 5.27524 5.33354 5.40228 5.44423 5.46461 5.49984 5.64298 5.74575 5.79059 5.91759 6.14720 6.27224 6.40777 6.90908 7.61234 8.55374 8.73325 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026178 B = 0.003600 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.344862 B = 7775.939130 C = 8425.290480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.028 4.028 3 C -0.145 4.145 4 C -0.137 4.137 5 C -0.077 4.077 6 C -0.112 4.112 7 C -0.116 4.116 8 C -0.089 4.089 9 C 0.219 3.781 10 C -0.144 4.144 11 C -0.146 4.146 12 N -0.750 5.750 13 C 0.546 3.454 14 O -0.611 6.611 15 C -0.579 4.579 16 H 0.080 0.920 17 C 0.033 3.967 18 N -0.818 5.818 19 Si 0.992 3.008 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.252 1.252 23 C -0.127 4.127 24 C -0.120 4.120 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.388 0.612 43 H 0.273 0.727 44 H 0.115 0.885 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.194 7.991 -19.178 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 C -0.202 4.202 4 C -0.194 4.194 5 C -0.077 4.077 6 C -0.130 4.130 7 C -0.135 4.135 8 C -0.089 4.089 9 C 0.132 3.868 10 C -0.202 4.202 11 C -0.204 4.204 12 N -0.405 5.405 13 C 0.350 3.650 14 O -0.497 6.497 15 C -0.616 4.616 16 H 0.098 0.902 17 C -0.182 4.182 18 N -0.448 5.448 19 Si 0.812 3.188 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.175 1.175 23 C -0.146 4.146 24 C -0.137 4.137 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.160 0.840 35 H 0.149 0.851 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.223 0.777 43 H 0.083 0.917 44 H 0.133 0.867 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.536 7.180 -18.606 22.555 hybrid contribution 1.046 0.295 0.698 1.292 sum -9.489 7.476 -17.909 21.602 Atomic orbital electron populations 1.21880 0.92969 1.02346 1.02151 1.19540 0.96190 0.95213 0.91849 1.21971 1.01143 0.94635 1.02447 1.21882 1.00806 1.00451 0.96256 1.20091 0.97138 0.94149 0.96347 1.21137 1.00239 0.94510 0.97108 1.21142 0.97731 1.00435 0.94156 1.19888 0.98967 0.94720 0.95346 1.18834 0.85230 0.91890 0.90855 1.22070 0.97893 1.00940 0.99327 1.22123 1.01451 0.96093 1.00767 1.46140 1.27536 1.37479 1.29382 1.18379 0.84356 0.83165 0.79103 1.90496 1.67735 1.32381 1.59133 1.21420 1.09446 1.13515 1.17236 0.90226 1.26848 1.02799 0.94118 0.94455 1.70170 1.38069 1.20958 1.15589 0.85095 0.76100 0.78382 0.79257 1.18798 1.19775 1.17513 1.21074 1.00755 0.94282 0.98456 1.21308 0.98104 1.00741 0.93592 0.93225 0.90986 0.92200 0.92523 0.91071 0.92479 0.92221 0.90968 0.93312 0.84034 0.85052 0.90947 0.93368 0.93840 0.93522 0.94032 0.90170 0.77708 0.91726 0.86712 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.29 71.98 0.60 -1.25 16 2 C -0.03 -0.43 0.85 -52.92 -0.05 -0.48 16 3 C -0.14 -2.04 7.13 71.98 0.51 -1.52 16 4 C -0.14 -1.89 8.29 71.98 0.60 -1.29 16 5 C -0.08 -1.65 4.76 -19.87 -0.09 -1.74 16 6 C -0.11 -2.47 8.71 22.27 0.19 -2.27 16 7 C -0.12 -3.11 9.15 22.27 0.20 -2.91 16 8 C -0.09 -2.86 4.80 -19.87 -0.10 -2.95 16 9 C 0.22 8.72 0.89 2.86 0.00 8.72 16 10 C -0.14 -5.93 8.35 71.98 0.60 -5.33 16 11 C -0.15 -5.85 7.88 71.98 0.57 -5.28 16 12 N -0.75 -34.76 4.86 -430.58 -2.09 -36.85 16 13 C 0.55 31.63 7.16 86.36 0.62 32.24 16 14 O -0.61 -39.60 11.25 -4.30 -0.05 -39.65 16 15 C -0.58 -33.36 9.54 24.83 0.24 -33.12 16 16 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 17 C 0.03 1.86 5.49 85.31 0.47 2.33 16 18 N -0.82 -50.21 11.85 21.84 0.26 -49.95 16 19 Si 0.99 41.70 29.56 68.60 2.03 43.73 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 23 C -0.13 -3.81 9.02 22.27 0.20 -3.61 16 24 C -0.12 -2.90 8.98 22.27 0.20 -2.70 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 0.78 7.39 -2.39 -0.02 0.76 16 28 H 0.06 0.83 7.51 -2.39 -0.02 0.81 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.83 7.51 -2.39 -0.02 0.81 16 31 H 0.06 0.79 7.39 -2.39 -0.02 0.78 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.14 2.38 7.10 -2.91 -0.02 2.36 16 35 H 0.13 3.20 6.35 -2.91 -0.02 3.18 16 36 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.05 2.41 6.03 -2.39 -0.01 2.39 16 38 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.04 2.03 6.30 -2.39 -0.02 2.02 16 41 H 0.08 2.58 6.52 -2.39 -0.02 2.57 16 42 H 0.39 16.23 6.39 -92.71 -0.59 15.64 16 43 H 0.27 15.21 8.29 -92.71 -0.77 14.44 16 44 H 0.11 3.58 6.42 -2.91 -0.02 3.56 16 45 H 0.14 2.83 5.90 -2.91 -0.02 2.81 16 Total: -1.00 -72.66 350.24 5.30 -67.36 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: 0.39 Total: 36.53 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 4.76 Total: -21.17 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -1.84 Total: -86.80 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.05 Total: -39.65 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -72.66 5.30 -67.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259150090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.794 kcal (2) G-P(sol) polarization free energy of solvation -72.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds