Wall clock time and date at job start Tue Mar 31 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47163 * 2 1 4 4 C 1.53114 * 109.52334 * 174.99824 * 3 2 1 5 5 C 1.53036 * 109.27552 * 177.55569 * 4 3 2 6 6 N 1.46847 * 109.52977 * 300.82014 * 5 4 3 7 7 C 1.46899 * 111.00424 * 185.83968 * 6 5 4 8 8 C 1.50691 * 109.46994 * 170.00123 * 7 6 5 9 9 C 1.38300 * 119.93364 * 269.72676 * 8 7 6 10 10 C 1.38095 * 120.07261 * 179.72807 * 9 8 7 11 11 C 1.38884 * 119.92978 * 0.54600 * 10 9 8 12 12 O 1.35753 * 120.06831 * 179.74778 * 11 10 9 13 13 C 1.34831 * 116.99592 * 174.44159 * 12 11 10 14 14 H 1.07997 * 119.99787 * 5.05571 * 13 12 11 15 15 C 1.38648 * 119.99547 * 185.05628 * 13 12 11 16 16 N 1.31549 * 120.00597 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99861 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46937 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47491 * 119.99560 * 17 15 13 20 20 H 1.48498 * 109.47246 * 239.99924 * 17 15 13 21 21 C 1.38881 * 119.86021 * 359.72957 * 11 10 9 22 22 C 1.38101 * 119.93156 * 359.97438 * 21 11 10 23 23 C 1.46845 * 111.19321 * 61.74302 * 6 5 4 24 24 C 1.53044 * 109.52313 * 298.25654 * 23 6 5 25 25 H 1.08997 * 109.47128 * 60.00495 * 1 2 3 26 26 H 1.09002 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47470 * 299.99983 * 1 2 3 28 28 H 1.08996 * 109.47470 * 240.00017 * 2 1 3 29 29 H 1.08997 * 109.47128 * 119.99505 * 2 1 3 30 30 H 1.09004 * 109.52198 * 54.87042 * 3 2 1 31 31 H 1.09002 * 109.50149 * 57.61752 * 4 3 2 32 32 H 1.08995 * 109.53845 * 297.52144 * 4 3 2 33 33 H 1.09003 * 109.46215 * 180.79992 * 5 4 3 34 34 H 1.08995 * 109.45433 * 60.83705 * 5 4 3 35 35 H 1.09003 * 109.47005 * 290.00089 * 7 6 5 36 36 H 1.08997 * 109.46764 * 49.99634 * 7 6 5 37 37 H 1.08003 * 119.96454 * 359.97438 * 9 8 7 38 38 H 1.08000 * 120.03805 * 180.27357 * 10 9 8 39 39 H 0.96998 * 120.00746 * 180.02562 * 16 15 13 40 40 H 1.07996 * 120.03615 * 179.97438 * 21 11 10 41 41 H 1.07996 * 119.96911 * 180.02562 * 22 21 11 42 42 H 1.08998 * 109.46825 * 58.27624 * 23 6 5 43 43 H 1.08996 * 109.46369 * 178.24747 * 23 6 5 44 44 H 1.08992 * 109.50429 * 299.24122 * 24 23 6 45 45 H 1.09002 * 109.50183 * 179.12273 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5660 1.4457 0.1258 5 6 4.0750 2.8877 0.0639 6 7 3.6697 3.4971 -1.2092 7 6 4.2578 4.8343 -1.3636 8 6 4.0271 5.3251 -2.7696 9 6 4.9603 5.0595 -3.7551 10 6 4.7492 5.5030 -5.0457 11 6 3.6036 6.2264 -5.3511 12 8 3.3957 6.6682 -6.6178 13 6 2.2126 7.2628 -6.8721 14 1 1.5149 7.4430 -6.0677 15 6 1.8919 7.6428 -8.1664 16 7 2.7415 7.4229 -9.1463 17 14 0.2530 8.4672 -8.5187 18 1 -0.5166 8.5987 -7.2555 19 1 0.4906 9.8144 -9.0966 20 1 -0.5181 7.6435 -9.4841 21 6 2.6711 6.4965 -4.3580 22 6 2.8851 6.0449 -3.0706 23 6 2.2072 3.5480 -1.3315 24 6 1.6424 2.1258 -1.3114 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6041 1.9830 0.8402 31 1 3.9998 0.8712 -0.6926 32 1 3.8543 0.9985 1.0771 33 1 5.1624 2.8925 0.1390 34 1 3.6515 3.4579 0.8906 35 1 3.7899 5.5207 -0.6578 36 1 5.3287 4.7851 -1.1670 37 1 5.8533 4.5011 -3.5160 38 1 5.4762 5.2915 -5.8158 39 1 2.5173 7.6891 -10.0516 40 1 1.7795 7.0591 -4.5923 41 1 2.1601 6.2542 -2.2980 42 1 1.7925 4.1153 -0.4983 43 1 1.9379 4.0324 -2.2701 44 1 2.0460 1.5620 -2.1524 45 1 0.5557 2.1647 -1.3866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264591766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:53 Heat of formation + Delta-G solvation = -20.889417 kcal Electronic energy + Delta-G solvation = -22768.685488 eV Core-core repulsion = 19557.768267 eV Total energy + Delta-G solvation = -3210.917221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.56535 -38.74257 -36.76029 -35.10800 -32.35552 -31.46138 -30.77390 -30.09099 -29.06663 -25.92949 -25.09141 -23.69309 -22.88019 -21.85765 -21.09430 -20.26066 -19.69953 -17.94600 -16.91149 -16.00594 -15.17683 -15.11873 -14.76295 -14.53328 -14.35359 -14.10977 -13.90497 -13.67809 -13.50981 -13.30321 -13.10262 -12.66722 -12.53966 -12.35443 -11.99080 -11.86275 -11.69634 -11.41902 -11.23605 -11.22533 -11.11373 -10.77323 -10.73248 -10.60249 -10.54180 -10.40491 -10.20202 -10.07928 -9.30244 -8.81897 -8.18882 -8.09523 -7.13676 -6.43327 -4.02093 2.25551 2.32097 3.12756 3.14468 3.19920 3.97709 4.05808 4.57928 4.66186 4.67809 4.75110 5.09690 5.12172 5.14242 5.23354 5.24679 5.32237 5.40923 5.45528 5.47132 5.52458 5.58105 5.63984 5.75700 5.77414 5.82005 5.83002 5.91125 5.93731 5.97425 6.00181 6.06247 6.20139 6.23968 6.25624 6.40666 6.46892 6.74505 6.93796 7.06330 7.21876 7.24890 7.33161 7.44377 7.48064 7.86730 8.01979 9.02562 9.73548 10.74924 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.003318 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.737485 B = 8437.538147 C = 9299.828888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.110 4.110 5 C 0.055 3.945 6 N -0.531 5.531 7 C 0.113 3.887 8 C -0.177 4.177 9 C -0.053 4.053 10 C -0.194 4.194 11 C 0.156 3.844 12 O -0.179 6.179 13 C -0.391 4.391 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.863 5.863 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.234 4.234 22 C -0.066 4.066 23 C 0.053 3.947 24 C -0.111 4.111 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.026 0.974 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.269 0.731 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.025 0.975 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 -10.343 18.328 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.108 4.108 4 C -0.148 4.148 5 C -0.073 4.073 6 N -0.256 5.256 7 C -0.013 4.013 8 C -0.178 4.178 9 C -0.072 4.072 10 C -0.213 4.213 11 C 0.102 3.898 12 O -0.083 6.083 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.254 4.254 22 C -0.085 4.085 23 C -0.075 4.075 24 C -0.149 4.149 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.143 0.857 41 H 0.120 0.880 42 H 0.043 0.957 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.998 -10.596 17.500 20.482 hybrid contribution -1.209 0.975 0.479 1.625 sum -2.207 -9.621 17.979 20.511 Atomic orbital electron populations 1.21819 0.96043 1.01340 1.01945 1.21551 0.95792 0.96414 1.01789 1.21242 0.95556 0.95815 0.98138 1.21626 0.95233 0.96328 1.01635 1.22061 1.00052 0.94998 0.90153 1.61969 1.09351 1.21663 1.32636 1.20776 0.98942 0.87765 0.93837 1.19069 0.97628 1.06332 0.94795 1.20445 0.97790 0.97227 0.91693 1.20218 0.98789 1.05369 0.96962 1.19392 0.93249 0.91353 0.85808 1.83982 1.36441 1.65347 1.22493 1.21362 0.92994 1.37701 0.94658 0.89080 1.25277 0.99419 0.97503 0.94336 1.70042 1.35059 1.44221 1.00506 0.85661 0.80188 0.78721 0.78936 1.19133 1.20168 1.20142 1.21114 1.02444 1.08518 0.93282 1.20584 0.95796 0.96655 0.95473 1.22152 0.87234 0.96650 1.01456 1.21678 0.99879 0.95791 0.97548 0.92302 0.93045 0.93015 0.91876 0.92360 0.91853 0.91052 0.92015 0.91039 0.95529 0.95209 0.90934 0.87122 0.86612 0.92100 0.85702 0.88028 0.95714 0.89556 0.91041 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.68 37.16 0.36 -0.87 16 2 C -0.12 -0.99 5.41 -26.73 -0.14 -1.14 16 3 C -0.09 -0.85 2.25 -90.50 -0.20 -1.06 16 4 C -0.11 -1.06 5.38 -26.65 -0.14 -1.20 16 5 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 6 N -0.53 -7.06 4.65 -236.12 -1.10 -8.16 16 7 C 0.11 1.58 5.12 -4.98 -0.03 1.56 16 8 C -0.18 -3.05 4.89 -104.58 -0.51 -3.56 16 9 C -0.05 -0.96 9.69 -39.61 -0.38 -1.35 16 10 C -0.19 -4.17 9.99 -39.39 -0.39 -4.56 16 11 C 0.16 3.80 6.65 -39.10 -0.26 3.54 16 12 O -0.18 -5.16 9.76 0.04 0.00 -5.16 16 13 C -0.39 -11.00 9.49 30.88 0.29 -10.71 16 14 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 16 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 17 Si 0.94 20.64 29.55 -169.99 -5.02 15.61 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 C -0.23 -5.12 9.17 -39.39 -0.36 -5.48 16 22 C -0.07 -1.22 7.86 -39.61 -0.31 -1.53 16 23 C 0.05 0.69 5.15 -3.83 -0.02 0.67 16 24 C -0.11 -1.26 5.08 -26.64 -0.14 -1.40 16 25 H 0.06 0.50 6.64 -51.93 -0.34 0.15 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.03 0.40 8.07 -51.93 -0.42 -0.02 16 36 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 37 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 41 H 0.10 1.63 7.95 -52.49 -0.42 1.21 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 1.32 5.74 -51.93 -0.30 1.02 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.69 6.71 -51.93 -0.35 0.34 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -29.88 353.43 -9.83 -39.71 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.43 Total: 2.93 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -2.36 Total: -25.52 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: -0.34 Total: -32.88 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.88 -9.83 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264591766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.817 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds