Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47163 * 2 1 4 4 C 1.53114 * 109.52334 * 174.99824 * 3 2 1 5 5 C 1.53036 * 109.27552 * 177.55569 * 4 3 2 6 6 N 1.46847 * 109.52977 * 300.82014 * 5 4 3 7 7 C 1.46899 * 111.00424 * 185.83968 * 6 5 4 8 8 C 1.50691 * 109.46994 * 170.00123 * 7 6 5 9 9 C 1.38300 * 119.93364 * 269.72676 * 8 7 6 10 10 C 1.38095 * 120.07261 * 179.72807 * 9 8 7 11 11 C 1.38884 * 119.92978 * 0.54600 * 10 9 8 12 12 O 1.35753 * 120.06831 * 179.74778 * 11 10 9 13 13 C 1.34831 * 116.99592 * 174.44159 * 12 11 10 14 14 H 1.07997 * 119.99787 * 5.05571 * 13 12 11 15 15 C 1.38648 * 119.99547 * 185.05628 * 13 12 11 16 16 N 1.31549 * 120.00597 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99861 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46937 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47491 * 119.99560 * 17 15 13 20 20 H 1.48498 * 109.47246 * 239.99924 * 17 15 13 21 21 C 1.38881 * 119.86021 * 359.72957 * 11 10 9 22 22 C 1.38101 * 119.93156 * 359.97438 * 21 11 10 23 23 C 1.46845 * 111.19321 * 61.74302 * 6 5 4 24 24 C 1.53044 * 109.52313 * 298.25654 * 23 6 5 25 25 H 1.08997 * 109.47128 * 60.00495 * 1 2 3 26 26 H 1.09002 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47470 * 299.99983 * 1 2 3 28 28 H 1.08996 * 109.47470 * 240.00017 * 2 1 3 29 29 H 1.08997 * 109.47128 * 119.99505 * 2 1 3 30 30 H 1.09004 * 109.52198 * 54.87042 * 3 2 1 31 31 H 1.09002 * 109.50149 * 57.61752 * 4 3 2 32 32 H 1.08995 * 109.53845 * 297.52144 * 4 3 2 33 33 H 1.09003 * 109.46215 * 180.79992 * 5 4 3 34 34 H 1.08995 * 109.45433 * 60.83705 * 5 4 3 35 35 H 1.09003 * 109.47005 * 290.00089 * 7 6 5 36 36 H 1.08997 * 109.46764 * 49.99634 * 7 6 5 37 37 H 1.08003 * 119.96454 * 359.97438 * 9 8 7 38 38 H 1.08000 * 120.03805 * 180.27357 * 10 9 8 39 39 H 0.96998 * 120.00746 * 180.02562 * 16 15 13 40 40 H 1.07996 * 120.03615 * 179.97438 * 21 11 10 41 41 H 1.07996 * 119.96911 * 180.02562 * 22 21 11 42 42 H 1.08998 * 109.46825 * 58.27624 * 23 6 5 43 43 H 1.08996 * 109.46369 * 178.24747 * 23 6 5 44 44 H 1.08992 * 109.50429 * 299.24122 * 24 23 6 45 45 H 1.09002 * 109.50183 * 179.12273 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5660 1.4457 0.1258 5 6 4.0750 2.8877 0.0639 6 7 3.6697 3.4971 -1.2092 7 6 4.2578 4.8343 -1.3636 8 6 4.0271 5.3251 -2.7696 9 6 4.9603 5.0595 -3.7551 10 6 4.7492 5.5030 -5.0457 11 6 3.6036 6.2264 -5.3511 12 8 3.3957 6.6682 -6.6178 13 6 2.2126 7.2628 -6.8721 14 1 1.5149 7.4430 -6.0677 15 6 1.8919 7.6428 -8.1664 16 7 2.7415 7.4229 -9.1463 17 14 0.2530 8.4672 -8.5187 18 1 -0.5166 8.5987 -7.2555 19 1 0.4906 9.8144 -9.0966 20 1 -0.5181 7.6435 -9.4841 21 6 2.6711 6.4965 -4.3580 22 6 2.8851 6.0449 -3.0706 23 6 2.2072 3.5480 -1.3315 24 6 1.6424 2.1258 -1.3114 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6041 1.9830 0.8402 31 1 3.9998 0.8712 -0.6926 32 1 3.8543 0.9985 1.0771 33 1 5.1624 2.8925 0.1390 34 1 3.6515 3.4579 0.8906 35 1 3.7899 5.5207 -0.6578 36 1 5.3287 4.7851 -1.1670 37 1 5.8533 4.5011 -3.5160 38 1 5.4762 5.2915 -5.8158 39 1 2.5173 7.6891 -10.0516 40 1 1.7795 7.0591 -4.5923 41 1 2.1601 6.2542 -2.2980 42 1 1.7925 4.1153 -0.4983 43 1 1.9379 4.0324 -2.2701 44 1 2.0460 1.5620 -2.1524 45 1 0.5557 2.1647 -1.3866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264591766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = -37.640795 kcal Electronic energy + Delta-G solvation = -22769.411882 eV Core-core repulsion = 19557.768267 eV Total energy + Delta-G solvation = -3211.643615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94112 -40.08402 -38.33764 -36.14804 -34.30716 -32.54824 -31.90270 -31.51926 -30.33005 -27.60387 -26.50400 -24.67025 -24.00279 -23.41374 -22.04871 -21.66540 -20.54320 -19.82434 -18.80514 -16.97993 -16.51253 -16.48348 -16.20114 -15.77485 -15.54503 -15.48746 -15.29370 -14.85216 -14.81285 -14.48389 -14.25866 -14.11151 -13.93069 -13.58502 -13.24003 -12.97295 -12.91291 -12.71651 -12.52242 -12.33939 -12.20538 -12.12101 -12.07240 -12.00730 -11.82295 -11.41224 -11.16434 -11.01347 -10.97279 -10.78985 -9.74822 -9.19826 -8.86335 -8.47064 -6.15187 0.61164 0.69167 1.34427 1.42827 1.52817 2.17457 2.75386 3.05148 3.34467 3.53830 3.83375 3.87848 3.93649 4.02977 4.05592 4.21768 4.36179 4.38288 4.43535 4.50297 4.55057 4.61732 4.64832 4.71700 4.74206 4.79109 4.80806 4.87566 5.01127 5.09506 5.10199 5.13903 5.15663 5.18315 5.23006 5.29367 5.31380 5.36621 5.48582 5.59322 5.61694 5.72121 5.82563 6.03454 6.18880 6.24371 6.33704 6.97790 7.79378 8.76584 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.003318 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.737485 B = 8437.538147 C = 9299.828888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.084 4.084 4 C -0.108 4.108 5 C 0.055 3.945 6 N -0.544 5.544 7 C 0.115 3.885 8 C -0.151 4.151 9 C -0.048 4.048 10 C -0.206 4.206 11 C 0.114 3.886 12 O -0.234 6.234 13 C -0.413 4.413 14 H 0.100 0.900 15 C -0.023 4.023 16 N -0.921 5.921 17 Si 1.018 2.982 18 H -0.252 1.252 19 H -0.268 1.268 20 H -0.268 1.268 21 C -0.242 4.242 22 C -0.062 4.062 23 C 0.053 3.947 24 C -0.109 4.109 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.145 0.855 38 H 0.111 0.889 39 H 0.272 0.728 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.034 0.966 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 -11.272 21.992 24.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.103 4.103 4 C -0.146 4.146 5 C -0.072 4.072 6 N -0.270 5.270 7 C -0.012 4.012 8 C -0.153 4.153 9 C -0.066 4.066 10 C -0.225 4.225 11 C 0.064 3.936 12 O -0.140 6.140 13 C -0.489 4.489 14 H 0.118 0.882 15 C -0.221 4.221 16 N -0.560 5.560 17 Si 0.838 3.162 18 H -0.175 1.175 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.262 4.262 22 C -0.080 4.080 23 C -0.075 4.075 24 C -0.146 4.146 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.162 0.838 38 H 0.130 0.870 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.507 -11.551 21.228 24.214 hybrid contribution -0.914 1.093 -0.344 1.466 sum -2.422 -10.458 20.884 23.482 Atomic orbital electron populations 1.21819 0.95802 1.01784 1.01762 1.21525 0.95992 0.95692 1.02062 1.21206 0.95779 0.96294 0.96975 1.21625 0.94923 0.95654 1.02349 1.22148 1.00851 0.95333 0.88878 1.61913 1.09298 1.21041 1.34699 1.20799 1.00558 0.88572 0.91224 1.19585 0.95887 1.03234 0.96546 1.20826 0.99120 0.96383 0.90274 1.20465 0.98019 1.05411 0.98597 1.19917 0.95181 0.93156 0.85326 1.83944 1.37312 1.67901 1.24892 1.21845 0.93436 1.38088 0.95503 0.88224 1.26584 1.03716 0.98064 0.93708 1.70186 1.37820 1.46854 1.01125 0.84534 0.74828 0.77594 0.79270 1.17511 1.19259 1.19319 1.21197 1.01767 1.08846 0.94363 1.20884 0.96806 0.95764 0.94550 1.22112 0.87513 0.97511 1.00357 1.21644 1.00029 0.94830 0.98134 0.93163 0.92364 0.92496 0.92581 0.91093 0.91320 0.92101 0.89922 0.89903 0.94681 0.93845 0.88887 0.83752 0.87040 0.91847 0.86589 0.85098 0.94802 0.92197 0.92767 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.68 71.98 0.70 -1.44 16 2 C -0.12 -1.65 5.41 30.60 0.17 -1.49 16 3 C -0.08 -1.37 2.25 -10.71 -0.02 -1.39 16 4 C -0.11 -1.70 5.38 30.64 0.16 -1.53 16 5 C 0.06 0.97 5.46 86.33 0.47 1.44 16 6 N -0.54 -12.61 4.65 -900.95 -4.19 -16.79 16 7 C 0.12 2.75 5.12 85.55 0.44 3.18 16 8 C -0.15 -4.83 4.89 -19.84 -0.10 -4.92 16 9 C -0.05 -1.65 9.69 22.25 0.22 -1.44 16 10 C -0.21 -9.03 9.99 22.39 0.22 -8.80 16 11 C 0.11 5.84 6.65 22.58 0.15 5.99 16 12 O -0.23 -14.39 9.76 -22.78 -0.22 -14.61 16 13 C -0.41 -24.48 9.49 67.92 0.64 -23.84 16 14 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 15 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 16 N -0.92 -57.38 13.67 21.61 0.30 -57.08 16 17 Si 1.02 43.47 29.55 68.60 2.03 45.49 16 18 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 21 C -0.24 -10.81 9.17 22.39 0.21 -10.60 16 22 C -0.06 -2.17 7.86 22.25 0.17 -1.99 16 23 C 0.05 1.26 5.15 86.33 0.44 1.70 16 24 C -0.11 -2.27 5.08 30.65 0.16 -2.11 16 25 H 0.05 0.77 6.64 -2.39 -0.02 0.76 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.29 8.02 -2.39 -0.02 1.27 16 34 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.04 0.96 8.07 -2.39 -0.02 0.94 16 36 H 0.09 1.91 7.93 -2.39 -0.02 1.89 16 37 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 38 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 39 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 41 H 0.13 3.84 7.95 -2.91 -0.02 3.82 16 42 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 1.73 5.74 -2.39 -0.01 1.72 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.07 1.37 6.71 -2.39 -0.02 1.35 16 Total: -1.00 -69.37 353.43 3.36 -66.01 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.95 Total: 25.11 kcal Atomic # 6 Polarization: -52.62 SS G_CDS: 4.50 Total: -48.12 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -3.89 Total: -73.88 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.22 Total: -14.61 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -69.37 3.36 -66.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264591766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.366 kcal (2) G-P(sol) polarization free energy of solvation -69.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds