Wall clock time and date at job start Tue Mar 31 2020 06:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47103 * 2 1 4 4 C 1.53000 * 109.46927 * 305.90152 * 3 2 1 5 5 C 1.53006 * 109.46861 * 185.41826 * 4 3 2 6 6 C 1.50690 * 109.47066 * 185.89960 * 3 2 1 7 7 O 1.21285 * 120.00104 * 243.31027 * 6 3 2 8 8 N 1.34775 * 120.00412 * 63.31339 * 6 3 2 9 9 C 1.46502 * 119.99566 * 5.90501 * 8 6 3 10 10 C 1.46495 * 120.00504 * 185.90604 * 8 6 3 11 11 C 1.50696 * 109.47373 * 89.99988 * 10 8 6 12 12 H 1.08005 * 119.99577 * 0.02562 * 11 10 8 13 13 C 1.37879 * 120.00172 * 180.02562 * 11 10 8 14 14 N 1.31511 * 119.99994 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99896 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47182 * 60.00038 * 15 13 11 17 17 H 1.48495 * 109.47044 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46876 * 300.00051 * 15 13 11 19 19 C 1.50707 * 109.46961 * 65.89840 * 3 2 1 20 20 C 1.38232 * 119.99509 * 64.73072 * 19 3 2 21 21 C 1.38237 * 119.99752 * 179.97438 * 20 19 3 22 22 C 1.38242 * 119.99983 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99538 * 0.27095 * 22 21 20 24 24 C 1.38227 * 119.99946 * 244.71086 * 19 3 2 25 25 H 1.09002 * 109.47189 * 65.29832 * 1 2 3 26 26 H 1.08999 * 109.47179 * 185.29354 * 1 2 3 27 27 H 1.08997 * 109.47378 * 305.29500 * 1 2 3 28 28 H 1.08999 * 109.46627 * 240.00222 * 2 1 3 29 29 H 1.08997 * 109.46684 * 120.00069 * 2 1 3 30 30 H 1.08998 * 109.47054 * 305.41513 * 4 3 2 31 31 H 1.08996 * 109.47287 * 65.41992 * 4 3 2 32 32 H 1.08994 * 109.46993 * 66.41948 * 5 4 3 33 33 H 1.08997 * 109.47389 * 186.42190 * 5 4 3 34 34 H 1.09002 * 109.47056 * 306.42394 * 5 4 3 35 35 H 1.09006 * 109.46968 * 92.88269 * 9 8 6 36 36 H 1.09000 * 109.47270 * 212.88275 * 9 8 6 37 37 H 1.08997 * 109.47463 * 332.88650 * 9 8 6 38 38 H 1.09008 * 109.47375 * 209.99928 * 10 8 6 39 39 H 1.09000 * 109.47133 * 329.99823 * 10 8 6 40 40 H 0.96997 * 119.99853 * 180.02562 * 14 13 11 41 41 H 1.07996 * 120.00516 * 359.97438 * 20 19 3 42 42 H 1.08002 * 120.00315 * 179.97438 * 21 20 19 43 43 H 1.07995 * 119.99875 * 179.97438 * 22 21 20 44 44 H 1.08000 * 119.99550 * 179.73251 * 23 22 21 45 45 H 1.08002 * 120.00260 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4125 2.2052 -1.1685 5 6 2.0233 3.6057 -1.2501 6 6 3.5398 1.4450 -0.1460 7 8 4.2351 1.8853 0.7448 8 7 4.1087 0.9580 -1.2666 9 6 3.2694 0.5461 -2.3946 10 6 5.5661 0.8404 -1.3567 11 6 5.9929 -0.5144 -0.8534 12 1 5.2524 -1.2177 -0.5019 13 6 7.3287 -0.8560 -0.8416 14 7 8.2303 0.0006 -1.2691 15 14 7.8576 -2.5357 -0.2183 16 1 7.2242 -3.5930 -1.0465 17 1 9.3351 -2.6544 -0.3084 18 1 7.4340 -2.6947 1.1961 19 6 1.6604 2.1095 1.2970 20 6 2.1919 1.6549 2.4894 21 6 1.8441 2.2670 3.6790 22 6 0.9653 3.3341 3.6763 23 6 0.4300 3.7854 2.4843 24 6 0.7812 3.1761 1.2942 25 1 -0.3634 0.4295 -0.9336 26 1 -0.3633 -1.0233 0.0948 27 1 -0.3634 0.5937 0.8387 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6062 1.6697 -2.0978 31 1 0.3367 2.2866 -1.0134 32 1 3.0769 3.5275 -1.5180 33 1 1.4981 4.1877 -2.0073 34 1 1.9302 4.0996 -0.2829 35 1 3.1563 1.3804 -3.0869 36 1 3.7386 -0.2923 -2.9094 37 1 2.2889 0.2439 -2.0266 38 1 5.8765 0.9565 -2.3952 39 1 6.0315 1.6168 -0.7495 40 1 9.1700 -0.2400 -1.2611 41 1 2.8788 0.8215 2.4915 42 1 2.2590 1.9116 4.6107 43 1 0.6933 3.8120 4.6057 44 1 -0.2600 4.6163 2.4826 45 1 0.3665 3.5317 0.3626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266591548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:28 Heat of formation + Delta-G solvation = 4.171880 kcal Electronic energy + Delta-G solvation = -24562.977186 eV Core-core repulsion = 21353.146705 eV Total energy + Delta-G solvation = -3209.830481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.81386 -38.29047 -35.99148 -34.79163 -32.53437 -32.14538 -30.50399 -30.03390 -28.13097 -26.87433 -25.71571 -23.29266 -22.81409 -22.26970 -21.92129 -20.05810 -18.51638 -16.75534 -16.48808 -15.77592 -15.53415 -15.06720 -14.97438 -14.61265 -14.42751 -13.94763 -13.82013 -13.61891 -12.99907 -12.83454 -12.48058 -12.41102 -12.23987 -12.07562 -11.95238 -11.89704 -11.65839 -11.40572 -11.23281 -11.04002 -10.97438 -10.83831 -10.70906 -10.53508 -10.25463 -10.19226 -9.89102 -9.62118 -8.77896 -8.54633 -8.43156 -8.38730 -7.58404 -6.03620 -4.08730 1.59552 1.68860 3.31176 3.35918 3.37377 3.48131 3.88630 4.18961 4.44646 4.66676 4.83614 5.01160 5.16184 5.18908 5.21128 5.28431 5.30496 5.34483 5.43145 5.49661 5.62324 5.67023 5.70652 5.79742 5.88237 5.93514 5.96569 6.01246 6.05567 6.17119 6.18654 6.23220 6.29434 6.32851 6.43846 6.49589 6.69629 6.77848 6.93266 7.09708 7.26221 7.47886 7.57660 7.93167 8.24556 8.46984 8.91040 9.14368 9.56513 11.04284 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.005228 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.007475 B = 5354.825333 C = 5786.874821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.039 4.039 4 C -0.132 4.132 5 C -0.167 4.167 6 C 0.521 3.479 7 O -0.535 6.535 8 N -0.598 5.598 9 C 0.062 3.938 10 C 0.246 3.754 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.047 4.047 20 C -0.078 4.078 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.121 4.121 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.030 0.970 39 H 0.044 0.956 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.345 3.975 1.406 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.043 4.043 4 C -0.169 4.169 5 C -0.224 4.224 6 C 0.307 3.693 7 O -0.412 6.412 8 N -0.330 5.330 9 C -0.082 4.082 10 C 0.127 3.873 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.048 4.048 20 C -0.096 4.096 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.139 4.139 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.729 4.231 1.826 18.318 hybrid contribution 0.566 -0.942 0.297 1.138 sum -17.163 3.289 2.124 17.604 Atomic orbital electron populations 1.21812 0.95252 1.01562 1.02039 1.21819 0.96318 0.93923 1.03751 1.19835 0.94125 0.96387 0.93904 1.22108 1.00084 0.96635 0.98080 1.22088 1.01563 0.96360 1.02374 1.19931 0.88581 0.78217 0.82564 1.90673 1.63980 1.46359 1.40147 1.47998 1.09429 1.61712 1.13853 1.22272 0.95903 0.99937 0.90064 1.19265 0.72815 0.97709 0.97558 1.21395 0.92296 1.00044 1.42814 0.92566 1.24929 0.96423 0.97399 0.95288 1.69924 1.01423 1.35112 1.46858 0.86581 0.77412 0.84056 0.79507 1.20245 1.21170 1.20224 1.19283 0.96399 0.95693 0.93406 1.21030 0.97069 0.99793 0.91723 1.21093 0.98427 0.96819 0.97989 1.21050 0.98262 0.97384 0.97774 1.21008 1.00938 1.00359 0.92714 1.21221 0.98466 0.95987 0.98181 0.92433 0.92738 0.92415 0.89713 0.91232 0.89384 0.90885 0.92274 0.92721 0.91450 0.93623 0.91190 0.90205 0.95174 0.93810 0.92679 0.86030 0.86487 0.86758 0.86649 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.12 37.16 0.34 -1.26 16 2 C -0.12 -1.66 4.61 -26.73 -0.12 -1.78 16 3 C -0.04 -0.60 0.16 -156.81 -0.02 -0.63 16 4 C -0.13 -1.64 3.32 -26.73 -0.09 -1.73 16 5 C -0.17 -2.24 8.69 37.16 0.32 -1.92 16 6 C 0.52 10.80 4.91 -10.99 -0.05 10.75 16 7 O -0.53 -13.48 14.16 5.55 0.08 -13.40 16 8 N -0.60 -12.59 2.86 -182.96 -0.52 -13.11 16 9 C 0.06 0.98 8.28 59.85 0.50 1.47 16 10 C 0.25 6.46 5.22 -5.20 -0.03 6.43 16 11 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 12 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 15 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 C -0.05 -0.74 3.15 -104.62 -0.33 -1.07 16 20 C -0.08 -1.31 7.76 -39.58 -0.31 -1.61 16 21 C -0.13 -1.82 10.05 -39.58 -0.40 -2.21 16 22 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 23 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 24 C -0.12 -1.62 7.30 -39.59 -0.29 -1.90 16 25 H 0.06 0.53 6.79 -51.93 -0.35 0.18 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.64 7.21 -51.93 -0.37 0.27 16 28 H 0.08 1.15 5.09 -51.93 -0.26 0.89 16 29 H 0.07 1.05 7.50 -51.93 -0.39 0.66 16 30 H 0.09 1.02 4.17 -51.93 -0.22 0.80 16 31 H 0.07 0.75 5.57 -51.93 -0.29 0.46 16 32 H 0.06 0.96 7.33 -51.93 -0.38 0.58 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.95 5.24 -51.93 -0.27 0.68 16 35 H 0.05 0.64 7.56 -51.93 -0.39 0.24 16 36 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 37 H 0.08 1.05 2.83 -51.93 -0.15 0.90 16 38 H 0.03 0.80 8.07 -51.92 -0.42 0.39 16 39 H 0.04 1.31 7.35 -51.93 -0.38 0.93 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 2.24 7.35 -52.49 -0.39 1.86 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.13 1.47 4.89 -52.49 -0.26 1.21 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -32.82 340.27 -7.90 -40.72 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.60 Total: 2.86 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.70 Total: -13.05 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.21 Total: -39.08 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.82 -7.90 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266591548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.888 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds