Wall clock time and date at job start Tue Mar 31 2020 06:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47103 * 2 1 4 4 C 1.53000 * 109.46927 * 305.90152 * 3 2 1 5 5 C 1.53006 * 109.46861 * 185.41826 * 4 3 2 6 6 C 1.50690 * 109.47066 * 185.89960 * 3 2 1 7 7 O 1.21285 * 120.00104 * 243.31027 * 6 3 2 8 8 N 1.34775 * 120.00412 * 63.31339 * 6 3 2 9 9 C 1.46502 * 119.99566 * 5.90501 * 8 6 3 10 10 C 1.46495 * 120.00504 * 185.90604 * 8 6 3 11 11 C 1.50696 * 109.47373 * 89.99988 * 10 8 6 12 12 H 1.08005 * 119.99577 * 0.02562 * 11 10 8 13 13 C 1.37879 * 120.00172 * 180.02562 * 11 10 8 14 14 N 1.31511 * 119.99994 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99896 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47182 * 60.00038 * 15 13 11 17 17 H 1.48495 * 109.47044 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46876 * 300.00051 * 15 13 11 19 19 C 1.50707 * 109.46961 * 65.89840 * 3 2 1 20 20 C 1.38232 * 119.99509 * 64.73072 * 19 3 2 21 21 C 1.38237 * 119.99752 * 179.97438 * 20 19 3 22 22 C 1.38242 * 119.99983 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99538 * 0.27095 * 22 21 20 24 24 C 1.38227 * 119.99946 * 244.71086 * 19 3 2 25 25 H 1.09002 * 109.47189 * 65.29832 * 1 2 3 26 26 H 1.08999 * 109.47179 * 185.29354 * 1 2 3 27 27 H 1.08997 * 109.47378 * 305.29500 * 1 2 3 28 28 H 1.08999 * 109.46627 * 240.00222 * 2 1 3 29 29 H 1.08997 * 109.46684 * 120.00069 * 2 1 3 30 30 H 1.08998 * 109.47054 * 305.41513 * 4 3 2 31 31 H 1.08996 * 109.47287 * 65.41992 * 4 3 2 32 32 H 1.08994 * 109.46993 * 66.41948 * 5 4 3 33 33 H 1.08997 * 109.47389 * 186.42190 * 5 4 3 34 34 H 1.09002 * 109.47056 * 306.42394 * 5 4 3 35 35 H 1.09006 * 109.46968 * 92.88269 * 9 8 6 36 36 H 1.09000 * 109.47270 * 212.88275 * 9 8 6 37 37 H 1.08997 * 109.47463 * 332.88650 * 9 8 6 38 38 H 1.09008 * 109.47375 * 209.99928 * 10 8 6 39 39 H 1.09000 * 109.47133 * 329.99823 * 10 8 6 40 40 H 0.96997 * 119.99853 * 180.02562 * 14 13 11 41 41 H 1.07996 * 120.00516 * 359.97438 * 20 19 3 42 42 H 1.08002 * 120.00315 * 179.97438 * 21 20 19 43 43 H 1.07995 * 119.99875 * 179.97438 * 22 21 20 44 44 H 1.08000 * 119.99550 * 179.73251 * 23 22 21 45 45 H 1.08002 * 120.00260 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4125 2.2052 -1.1685 5 6 2.0233 3.6057 -1.2501 6 6 3.5398 1.4450 -0.1460 7 8 4.2351 1.8853 0.7448 8 7 4.1087 0.9580 -1.2666 9 6 3.2694 0.5461 -2.3946 10 6 5.5661 0.8404 -1.3567 11 6 5.9929 -0.5144 -0.8534 12 1 5.2524 -1.2177 -0.5019 13 6 7.3287 -0.8560 -0.8416 14 7 8.2303 0.0006 -1.2691 15 14 7.8576 -2.5357 -0.2183 16 1 7.2242 -3.5930 -1.0465 17 1 9.3351 -2.6544 -0.3084 18 1 7.4340 -2.6947 1.1961 19 6 1.6604 2.1095 1.2970 20 6 2.1919 1.6549 2.4894 21 6 1.8441 2.2670 3.6790 22 6 0.9653 3.3341 3.6763 23 6 0.4300 3.7854 2.4843 24 6 0.7812 3.1761 1.2942 25 1 -0.3634 0.4295 -0.9336 26 1 -0.3633 -1.0233 0.0948 27 1 -0.3634 0.5937 0.8387 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6062 1.6697 -2.0978 31 1 0.3367 2.2866 -1.0134 32 1 3.0769 3.5275 -1.5180 33 1 1.4981 4.1877 -2.0073 34 1 1.9302 4.0996 -0.2829 35 1 3.1563 1.3804 -3.0869 36 1 3.7386 -0.2923 -2.9094 37 1 2.2889 0.2439 -2.0266 38 1 5.8765 0.9565 -2.3952 39 1 6.0315 1.6168 -0.7495 40 1 9.1700 -0.2400 -1.2611 41 1 2.8788 0.8215 2.4915 42 1 2.2590 1.9116 4.6107 43 1 0.6933 3.8120 4.6057 44 1 -0.2600 4.6163 2.4826 45 1 0.3665 3.5317 0.3626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266591548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:27 Heat of formation + Delta-G solvation = -15.243023 kcal Electronic energy + Delta-G solvation = -24563.819079 eV Core-core repulsion = 21353.146705 eV Total energy + Delta-G solvation = -3210.672375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.12945 -39.61178 -37.35396 -36.52859 -34.63290 -33.17607 -31.56465 -31.17009 -29.94143 -28.17512 -27.30469 -24.95674 -24.15779 -23.35581 -22.98063 -21.44527 -19.94658 -18.69896 -17.95772 -17.25947 -17.05993 -16.45206 -16.31421 -16.11802 -15.61298 -15.33080 -15.03413 -14.96008 -14.46329 -14.05626 -13.95892 -13.70616 -13.63325 -13.39312 -13.27203 -13.07256 -13.00227 -12.89716 -12.73190 -12.60622 -12.48723 -12.22604 -12.10333 -11.93467 -11.79617 -11.67863 -11.35145 -11.04536 -10.66777 -10.33101 -9.67295 -9.51217 -9.38302 -8.24259 -6.39790 0.51148 0.59560 1.33466 1.37867 1.45214 1.87622 2.31031 2.45581 2.99010 3.04833 3.48705 3.69102 3.91512 3.96393 4.18115 4.20725 4.23062 4.30792 4.36624 4.45764 4.54348 4.57982 4.63865 4.69587 4.75368 4.82286 4.92753 4.97773 5.00164 5.04604 5.11055 5.17411 5.21791 5.22585 5.23002 5.30491 5.42728 5.47484 5.54420 5.65133 5.68790 5.81745 5.85496 6.04506 6.19894 6.68224 6.81839 7.26541 7.51631 8.82503 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.005228 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.007475 B = 5354.825333 C = 5786.874821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.028 4.028 4 C -0.129 4.129 5 C -0.165 4.165 6 C 0.513 3.487 7 O -0.593 6.593 8 N -0.605 5.605 9 C 0.056 3.944 10 C 0.261 3.739 11 C -0.542 4.542 12 H 0.053 0.947 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.967 3.033 16 H -0.258 1.258 17 H -0.277 1.277 18 H -0.279 1.279 19 C -0.063 4.063 20 C -0.110 4.110 21 C -0.140 4.140 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.120 4.120 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.020 0.980 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.021 0.979 39 H -0.007 1.007 40 H 0.267 0.733 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.152 0.848 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.924 4.039 0.712 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C -0.031 4.031 4 C -0.165 4.165 5 C -0.222 4.222 6 C 0.302 3.698 7 O -0.474 6.474 8 N -0.336 5.336 9 C -0.085 4.085 10 C 0.140 3.860 11 C -0.581 4.581 12 H 0.071 0.929 13 C -0.191 4.191 14 N -0.568 5.568 15 Si 0.791 3.209 16 H -0.182 1.182 17 H -0.202 1.202 18 H -0.205 1.205 19 C -0.063 4.063 20 C -0.128 4.128 21 C -0.158 4.158 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.137 4.137 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.039 0.961 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.039 0.961 39 H 0.011 0.989 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.142 0.858 43 H 0.162 0.838 44 H 0.170 0.830 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -21.353 4.282 1.097 21.805 hybrid contribution 1.701 -0.879 0.559 1.995 sum -19.651 3.403 1.655 20.012 Atomic orbital electron populations 1.21768 0.92004 1.02666 1.03285 1.21834 0.99008 0.92455 1.02508 1.19813 0.89530 0.98150 0.95649 1.22199 1.01781 0.95572 0.96993 1.22082 0.99705 0.97512 1.02914 1.21024 0.91118 0.76491 0.81208 1.90630 1.66019 1.48730 1.42015 1.47985 1.07812 1.61940 1.15813 1.22599 0.96361 1.00747 0.88828 1.18698 0.76334 0.95436 0.95554 1.21660 0.92740 1.00659 1.43019 0.92871 1.25866 0.96408 1.01589 0.95242 1.70052 1.01821 1.37211 1.47742 0.85486 0.77379 0.79373 0.78701 1.18204 1.20247 1.20503 1.19376 0.97435 0.96878 0.92658 1.20941 0.98046 1.00101 0.93755 1.21284 0.99274 0.97699 0.97519 1.21418 0.97045 0.96316 0.99563 1.21478 1.00531 1.00581 0.91934 1.21508 0.97616 0.94739 0.99852 0.89765 0.91550 0.92707 0.89599 0.93904 0.88053 0.87108 0.96097 0.89344 0.92296 0.91139 0.91739 0.86883 0.96147 0.98865 0.92404 0.89826 0.85828 0.83781 0.82998 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.12 71.98 0.66 -1.88 16 2 C -0.12 -3.22 4.61 30.60 0.14 -3.08 16 3 C -0.03 -0.86 0.16 -53.67 -0.01 -0.86 16 4 C -0.13 -2.81 3.32 30.60 0.10 -2.71 16 5 C -0.17 -4.09 8.69 71.98 0.63 -3.47 16 6 C 0.51 22.34 4.91 87.65 0.43 22.77 16 7 O -0.59 -32.42 14.16 -3.05 -0.04 -32.46 16 8 N -0.60 -26.54 2.86 -851.14 -2.43 -28.97 16 9 C 0.06 1.73 8.28 127.77 1.06 2.79 16 10 C 0.26 14.64 5.22 85.63 0.45 15.08 16 11 C -0.54 -32.00 9.39 25.60 0.24 -31.76 16 12 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 13 C 0.01 0.47 5.46 84.66 0.46 0.93 16 14 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 15 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 C -0.06 -1.95 3.15 -19.87 -0.06 -2.01 16 20 C -0.11 -3.90 7.76 22.27 0.17 -3.72 16 21 C -0.14 -4.13 10.05 22.27 0.22 -3.90 16 22 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 23 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 24 C -0.12 -2.88 7.30 22.27 0.16 -2.72 16 25 H 0.08 1.10 6.79 -2.39 -0.02 1.08 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.05 7.21 -2.39 -0.02 1.04 16 28 H 0.09 2.22 5.09 -2.39 -0.01 2.20 16 29 H 0.04 1.35 7.50 -2.39 -0.02 1.34 16 30 H 0.10 1.95 4.17 -2.39 -0.01 1.94 16 31 H 0.11 1.67 5.57 -2.39 -0.01 1.65 16 32 H 0.02 0.66 7.33 -2.39 -0.02 0.64 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.56 5.24 -2.39 -0.01 1.54 16 35 H 0.07 1.84 7.56 -2.38 -0.02 1.82 16 36 H 0.06 2.07 8.09 -2.39 -0.02 2.05 16 37 H 0.11 2.71 2.83 -2.39 -0.01 2.70 16 38 H 0.02 1.16 8.07 -2.38 -0.02 1.14 16 39 H -0.01 -0.44 7.35 -2.39 -0.02 -0.46 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.08 3.48 7.35 -2.91 -0.02 3.46 16 42 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 43 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 45 H 0.15 2.82 4.89 -2.91 -0.01 2.81 16 Total: -1.00 -78.52 340.27 5.92 -72.60 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.99 Total: 18.08 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 5.10 Total: -19.78 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.15 Total: -86.17 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.04 Total: -32.46 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -78.52 5.92 -72.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266591548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.357 kcal (2) G-P(sol) polarization free energy of solvation -78.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds