Wall clock time and date at job start Tue Mar 31 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.46682 * 2 1 4 4 C 1.38233 * 119.99974 * 269.72039 * 3 2 1 5 5 C 1.38232 * 120.00123 * 179.76279 * 4 3 2 6 6 C 1.38237 * 119.99623 * 0.51584 * 5 4 3 7 7 C 1.50701 * 119.99912 * 179.71816 * 6 5 4 8 8 C 1.53002 * 109.47232 * 127.52205 * 7 6 5 9 9 C 1.52995 * 109.47360 * 247.52497 * 7 6 5 10 10 C 1.50699 * 109.47166 * 7.52419 * 7 6 5 11 11 O 1.21279 * 120.00446 * 246.27683 * 10 7 6 12 12 N 1.34779 * 119.99849 * 66.27605 * 10 7 6 13 13 C 1.46501 * 119.99927 * 354.76169 * 12 10 7 14 14 C 1.46501 * 119.99920 * 174.76590 * 12 10 7 15 15 C 1.50696 * 109.47306 * 89.99699 * 14 12 10 16 16 H 1.08000 * 120.00014 * 0.02562 * 15 14 12 17 17 C 1.37875 * 120.00070 * 179.97438 * 15 14 12 18 18 N 1.31519 * 120.00162 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00130 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47032 * 89.99803 * 19 17 15 21 21 H 1.48497 * 109.47033 * 210.00378 * 19 17 15 22 22 H 1.48507 * 109.46769 * 330.00094 * 19 17 15 23 23 C 1.38240 * 120.00313 * 359.74490 * 6 5 4 24 24 C 1.38231 * 119.99635 * 359.97438 * 23 6 5 25 25 H 1.08994 * 109.47071 * 60.00656 * 1 2 3 26 26 H 1.09000 * 109.46533 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47171 * 299.99627 * 1 2 3 28 28 H 1.08998 * 109.47426 * 240.00101 * 2 1 3 29 29 H 1.09006 * 109.47465 * 119.99324 * 2 1 3 30 30 H 1.08000 * 120.00027 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.00451 * 180.23069 * 5 4 3 32 32 H 1.09005 * 109.46827 * 68.75176 * 8 7 6 33 33 H 1.08991 * 109.47506 * 188.75045 * 8 7 6 34 34 H 1.08999 * 109.47050 * 308.75599 * 8 7 6 35 35 H 1.09005 * 109.47374 * 60.00182 * 9 7 6 36 36 H 1.09004 * 109.47735 * 180.02562 * 9 7 6 37 37 H 1.09005 * 109.47142 * 299.99956 * 9 7 6 38 38 H 1.09009 * 109.46734 * 92.95067 * 13 12 10 39 39 H 1.09002 * 109.47161 * 212.94447 * 13 12 10 40 40 H 1.08998 * 109.47477 * 332.95087 * 13 12 10 41 41 H 1.09005 * 109.46745 * 209.99894 * 14 12 10 42 42 H 1.09000 * 109.47248 * 329.99542 * 14 12 10 43 43 H 0.96992 * 119.99823 * 179.97438 * 18 17 15 44 44 H 1.07995 * 119.99813 * 179.97438 * 23 6 5 45 45 H 1.08002 * 119.99518 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7241 3.3756 -1.1972 6 6 2.9544 4.0272 0.0000 7 6 3.4576 5.4478 0.0000 8 6 2.5492 6.3106 0.8781 9 6 4.8841 5.4836 0.5519 10 6 3.4505 5.9832 -1.4087 11 8 4.4966 6.2497 -1.9614 12 7 2.2816 6.1658 -2.0542 13 6 1.0264 5.7375 -1.4320 14 6 2.2662 6.7927 -3.3783 15 6 2.3963 5.7299 -4.4388 16 1 2.4815 4.6914 -4.1549 17 6 2.4056 6.0833 -5.7714 18 7 2.3004 7.3478 -6.1172 19 14 2.5661 4.7658 -7.0860 20 1 1.2150 4.2901 -7.4776 21 1 3.2548 5.3326 -8.2733 22 1 3.3563 3.6275 -6.5520 23 6 2.7237 3.3757 1.1972 24 6 2.2622 2.0727 1.1972 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8901 30 1 2.0921 1.5601 -2.1324 31 1 2.9048 3.8844 -2.1324 32 1 2.6730 6.0227 1.9221 33 1 2.8166 7.3602 0.7565 34 1 1.5107 6.1635 0.5814 35 1 5.5314 4.8689 -0.0737 36 1 5.2479 6.5111 0.5524 37 1 4.8893 5.0963 1.5709 38 1 0.5906 6.5715 -0.8817 39 1 0.3313 5.4092 -2.2047 40 1 1.2234 4.9133 -0.7464 41 1 1.3275 7.3296 -3.5152 42 1 3.0993 7.4908 -3.4595 43 1 2.3073 7.5964 -7.0547 44 1 2.9041 3.8848 2.1324 45 1 2.0824 1.5636 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267334628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:06 Heat of formation + Delta-G solvation = -16.382402 kcal Electronic energy + Delta-G solvation = -24103.043876 eV Core-core repulsion = 20892.322094 eV Total energy + Delta-G solvation = -3210.721782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61349 -38.52745 -35.50075 -34.88051 -33.08526 -32.47314 -30.78467 -28.69333 -28.08311 -26.77573 -25.92261 -24.35770 -23.53981 -22.25876 -21.47628 -20.24506 -18.19000 -16.98940 -16.39616 -15.67309 -15.59052 -15.13852 -14.67181 -14.49755 -14.20718 -13.83760 -13.61029 -13.42549 -13.28312 -13.09428 -12.82569 -12.48353 -12.21285 -12.09646 -12.03004 -11.90656 -11.53007 -11.46946 -11.33253 -11.21737 -11.15457 -10.89202 -10.71860 -10.70392 -10.54554 -10.44065 -10.12712 -9.60380 -8.77803 -8.72458 -8.42330 -8.29397 -7.58401 -6.03000 -4.07437 1.44000 1.57530 3.30152 3.36701 3.39241 3.44577 3.86650 3.98128 4.45350 4.70859 4.78982 4.90796 4.94119 5.14975 5.21615 5.27987 5.30174 5.31094 5.40061 5.49880 5.59770 5.65322 5.74680 5.78288 5.81128 5.88250 5.96210 5.97995 6.01839 6.04079 6.09570 6.15175 6.24868 6.27111 6.35184 6.49290 6.60834 6.77245 6.79510 7.09436 7.16225 7.45040 7.57931 7.93451 8.24647 8.45406 8.91203 9.12248 9.57512 11.05068 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.005965 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.642217 B = 4692.528793 C = 6071.055215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.088 4.088 4 C -0.113 4.113 5 C -0.105 4.105 6 C -0.070 4.070 7 C -0.046 4.046 8 C -0.149 4.149 9 C -0.119 4.119 10 C 0.515 3.485 11 O -0.536 6.536 12 N -0.598 5.598 13 C 0.069 3.931 14 C 0.246 3.754 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.111 4.111 24 C -0.122 4.122 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.139 0.861 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.042 0.958 43 H 0.263 0.737 44 H 0.120 0.880 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.615 -10.168 16.790 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.131 4.131 5 C -0.123 4.123 6 C -0.070 4.070 7 C -0.049 4.049 8 C -0.206 4.206 9 C -0.177 4.177 10 C 0.301 3.699 11 O -0.413 6.413 12 N -0.329 5.329 13 C -0.074 4.074 14 C 0.126 3.874 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.129 4.129 24 C -0.140 4.140 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.156 0.844 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.138 0.862 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.083 -9.880 16.305 19.312 hybrid contribution -0.044 -0.633 -0.912 1.111 sum -3.127 -10.512 15.393 18.901 Atomic orbital electron populations 1.21747 0.94831 1.01430 1.02361 1.20519 0.96126 0.92902 1.02525 1.19863 0.99599 0.96101 0.93251 1.21027 0.99866 0.94727 0.97507 1.21580 0.97180 0.94737 0.98784 1.19523 0.99485 0.94560 0.93475 1.19828 0.97795 0.92356 0.94951 1.22170 1.00264 0.99424 0.98747 1.21616 0.93567 1.02824 0.99661 1.20054 0.84214 0.78905 0.86727 1.90671 1.31282 1.51372 1.68013 1.48098 1.05027 1.59602 1.20192 1.22113 0.87526 0.99166 0.98639 1.19282 0.98105 0.93522 0.76457 1.21398 1.50346 0.93552 0.90811 0.92514 1.24921 0.95147 0.95458 0.98526 1.69929 1.50370 1.15725 1.17386 0.86540 0.78073 0.81849 0.81248 1.20670 1.21089 1.19867 1.20854 1.00142 0.94675 0.97192 1.20875 1.01120 0.94825 0.97196 0.92342 0.92675 0.92632 0.91188 0.91362 0.86164 0.84384 0.91990 0.91968 0.90652 0.91791 0.91857 0.92530 0.93761 0.91270 0.90759 0.95056 0.94042 0.92756 0.86174 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.08 -0.80 6.07 -27.88 -0.17 -0.97 16 3 C -0.09 -1.08 5.13 -104.62 -0.54 -1.61 16 4 C -0.11 -1.65 9.70 -39.59 -0.38 -2.03 16 5 C -0.10 -1.76 7.21 -39.58 -0.29 -2.05 16 6 C -0.07 -1.05 3.11 -104.62 -0.33 -1.37 16 7 C -0.05 -0.73 0.59 -156.81 -0.09 -0.82 16 8 C -0.15 -1.92 7.61 37.16 0.28 -1.63 16 9 C -0.12 -1.76 7.66 37.15 0.28 -1.48 16 10 C 0.52 10.90 4.87 -10.98 -0.05 10.85 16 11 O -0.54 -13.76 15.62 5.56 0.09 -13.67 16 12 N -0.60 -12.78 2.21 -182.95 -0.40 -13.18 16 13 C 0.07 1.17 7.90 59.85 0.47 1.64 16 14 C 0.25 6.46 5.14 -5.20 -0.03 6.43 16 15 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 16 H 0.06 1.59 7.13 -52.49 -0.37 1.22 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 19 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 23 C -0.11 -1.35 8.84 -39.58 -0.35 -1.70 16 24 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.14 2.85 5.30 -52.49 -0.28 2.57 16 32 H 0.06 0.63 7.35 -51.93 -0.38 0.25 16 33 H 0.06 0.83 8.12 -51.93 -0.42 0.40 16 34 H 0.07 0.94 4.51 -51.93 -0.23 0.71 16 35 H 0.06 1.05 8.03 -51.93 -0.42 0.64 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.66 7.88 -51.93 -0.41 0.25 16 38 H 0.04 0.65 7.11 -51.92 -0.37 0.28 16 39 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 40 H 0.07 1.14 3.40 -51.93 -0.18 0.96 16 41 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 42 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.12 1.21 7.27 -52.49 -0.38 0.83 16 45 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -32.27 353.18 -8.08 -40.35 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.18 Total: 1.09 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.62 Total: -10.89 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.33 Total: -39.16 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.27 -8.08 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267334628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.971 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds