Wall clock time and date at job start Tue Mar 31 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.46682 * 2 1 4 4 C 1.38233 * 119.99974 * 269.72039 * 3 2 1 5 5 C 1.38232 * 120.00123 * 179.76279 * 4 3 2 6 6 C 1.38237 * 119.99623 * 0.51584 * 5 4 3 7 7 C 1.50701 * 119.99912 * 179.71816 * 6 5 4 8 8 C 1.53002 * 109.47232 * 127.52205 * 7 6 5 9 9 C 1.52995 * 109.47360 * 247.52497 * 7 6 5 10 10 C 1.50699 * 109.47166 * 7.52419 * 7 6 5 11 11 O 1.21279 * 120.00446 * 246.27683 * 10 7 6 12 12 N 1.34779 * 119.99849 * 66.27605 * 10 7 6 13 13 C 1.46501 * 119.99927 * 354.76169 * 12 10 7 14 14 C 1.46501 * 119.99920 * 174.76590 * 12 10 7 15 15 C 1.50696 * 109.47306 * 89.99699 * 14 12 10 16 16 H 1.08000 * 120.00014 * 0.02562 * 15 14 12 17 17 C 1.37875 * 120.00070 * 179.97438 * 15 14 12 18 18 N 1.31519 * 120.00162 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00130 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47032 * 89.99803 * 19 17 15 21 21 H 1.48497 * 109.47033 * 210.00378 * 19 17 15 22 22 H 1.48507 * 109.46769 * 330.00094 * 19 17 15 23 23 C 1.38240 * 120.00313 * 359.74490 * 6 5 4 24 24 C 1.38231 * 119.99635 * 359.97438 * 23 6 5 25 25 H 1.08994 * 109.47071 * 60.00656 * 1 2 3 26 26 H 1.09000 * 109.46533 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47171 * 299.99627 * 1 2 3 28 28 H 1.08998 * 109.47426 * 240.00101 * 2 1 3 29 29 H 1.09006 * 109.47465 * 119.99324 * 2 1 3 30 30 H 1.08000 * 120.00027 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.00451 * 180.23069 * 5 4 3 32 32 H 1.09005 * 109.46827 * 68.75176 * 8 7 6 33 33 H 1.08991 * 109.47506 * 188.75045 * 8 7 6 34 34 H 1.08999 * 109.47050 * 308.75599 * 8 7 6 35 35 H 1.09005 * 109.47374 * 60.00182 * 9 7 6 36 36 H 1.09004 * 109.47735 * 180.02562 * 9 7 6 37 37 H 1.09005 * 109.47142 * 299.99956 * 9 7 6 38 38 H 1.09009 * 109.46734 * 92.95067 * 13 12 10 39 39 H 1.09002 * 109.47161 * 212.94447 * 13 12 10 40 40 H 1.08998 * 109.47477 * 332.95087 * 13 12 10 41 41 H 1.09005 * 109.46745 * 209.99894 * 14 12 10 42 42 H 1.09000 * 109.47248 * 329.99542 * 14 12 10 43 43 H 0.96992 * 119.99823 * 179.97438 * 18 17 15 44 44 H 1.07995 * 119.99813 * 179.97438 * 23 6 5 45 45 H 1.08002 * 119.99518 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7241 3.3756 -1.1972 6 6 2.9544 4.0272 0.0000 7 6 3.4576 5.4478 0.0000 8 6 2.5492 6.3106 0.8781 9 6 4.8841 5.4836 0.5519 10 6 3.4505 5.9832 -1.4087 11 8 4.4966 6.2497 -1.9614 12 7 2.2816 6.1658 -2.0542 13 6 1.0264 5.7375 -1.4320 14 6 2.2662 6.7927 -3.3783 15 6 2.3963 5.7299 -4.4388 16 1 2.4815 4.6914 -4.1549 17 6 2.4056 6.0833 -5.7714 18 7 2.3004 7.3478 -6.1172 19 14 2.5661 4.7658 -7.0860 20 1 1.2150 4.2901 -7.4776 21 1 3.2548 5.3326 -8.2733 22 1 3.3563 3.6275 -6.5520 23 6 2.7237 3.3757 1.1972 24 6 2.2622 2.0727 1.1972 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8901 30 1 2.0921 1.5601 -2.1324 31 1 2.9048 3.8844 -2.1324 32 1 2.6730 6.0227 1.9221 33 1 2.8166 7.3602 0.7565 34 1 1.5107 6.1635 0.5814 35 1 5.5314 4.8689 -0.0737 36 1 5.2479 6.5111 0.5524 37 1 4.8893 5.0963 1.5709 38 1 0.5906 6.5715 -0.8817 39 1 0.3313 5.4092 -2.2047 40 1 1.2234 4.9133 -0.7464 41 1 1.3275 7.3296 -3.5152 42 1 3.0993 7.4908 -3.4595 43 1 2.3073 7.5964 -7.0547 44 1 2.9041 3.8848 2.1324 45 1 2.0824 1.5636 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267334628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:06 Heat of formation + Delta-G solvation = -34.518217 kcal Electronic energy + Delta-G solvation = -24103.830304 eV Core-core repulsion = 20892.322094 eV Total energy + Delta-G solvation = -3211.508210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96766 -39.83394 -36.78734 -36.68776 -34.67393 -33.96723 -31.84809 -29.97411 -29.63825 -28.12364 -27.42074 -25.84625 -24.79012 -23.58292 -22.64322 -21.45830 -19.68775 -18.83564 -18.10511 -17.30314 -16.91367 -16.47819 -16.14624 -15.84207 -15.61007 -15.00564 -14.78417 -14.58824 -14.49785 -14.25606 -14.15742 -13.96930 -13.64340 -13.55460 -13.31125 -13.09246 -13.05018 -12.96389 -12.71703 -12.58221 -12.48980 -12.28335 -12.23952 -12.08302 -11.85331 -11.73331 -11.62548 -11.48153 -10.67564 -10.47572 -9.77774 -9.44615 -9.32214 -8.25499 -6.39706 0.40198 0.52476 1.30775 1.34045 1.44162 1.78551 2.27707 2.42274 2.82873 3.03513 3.50118 3.63591 3.97114 4.00690 4.08309 4.12011 4.20930 4.38411 4.40086 4.55426 4.59414 4.60252 4.69067 4.73730 4.74909 4.82767 4.87062 4.89593 4.94414 5.01766 5.09027 5.12758 5.17549 5.19332 5.23084 5.24483 5.34718 5.43803 5.52895 5.58656 5.70520 5.77764 5.81737 6.03125 6.13759 6.66362 6.75824 7.25013 7.44807 8.81605 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.005965 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.642217 B = 4692.528793 C = 6071.055215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.083 4.083 4 C -0.128 4.128 5 C -0.134 4.134 6 C -0.080 4.080 7 C -0.036 4.036 8 C -0.146 4.146 9 C -0.116 4.116 10 C 0.506 3.494 11 O -0.597 6.597 12 N -0.600 5.600 13 C 0.070 3.930 14 C 0.260 3.740 15 C -0.537 4.537 16 H 0.049 0.951 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.963 3.037 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.276 1.276 23 C -0.098 4.098 24 C -0.111 4.111 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.023 0.977 42 H -0.004 1.004 43 H 0.267 0.733 44 H 0.157 0.843 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 -12.643 20.259 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.083 4.083 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.081 4.081 7 C -0.039 4.039 8 C -0.203 4.203 9 C -0.174 4.174 10 C 0.295 3.705 11 O -0.478 6.478 12 N -0.331 5.331 13 C -0.072 4.072 14 C 0.139 3.861 15 C -0.576 4.576 16 H 0.067 0.933 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.787 3.213 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.201 1.201 23 C -0.115 4.115 24 C -0.129 4.129 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.041 0.959 42 H 0.014 0.986 43 H 0.076 0.924 44 H 0.174 0.826 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.403 -12.367 19.803 23.759 hybrid contribution 0.359 0.101 -1.965 2.000 sum -4.044 -12.265 17.838 22.022 Atomic orbital electron populations 1.21733 0.94136 1.02383 1.01917 1.20589 0.96607 0.91246 1.03560 1.20165 0.98305 0.97245 0.92565 1.21041 1.00762 0.94117 0.98700 1.21251 1.00328 0.95952 0.97674 1.19434 1.00691 0.93934 0.93996 1.19811 0.99492 0.93508 0.91105 1.22207 0.99481 0.98285 1.00302 1.21641 0.92283 1.02065 1.01396 1.21196 0.82927 0.77485 0.88885 1.90620 1.33276 1.53925 1.70005 1.48042 1.07168 1.59164 1.18692 1.22327 0.85317 1.00954 0.98626 1.18750 0.95548 0.92632 0.79181 1.21631 1.50518 0.93558 0.91879 0.93258 1.25818 0.94550 0.97792 1.00830 1.70044 1.50950 1.17607 1.18122 0.85483 0.78838 0.78759 0.78170 1.18659 1.20343 1.20091 1.21169 0.98469 0.94920 0.96966 1.21325 0.99006 0.94416 0.98162 0.93979 0.91093 0.91875 0.91533 0.89018 0.87000 0.89527 0.87762 0.92810 0.90194 0.94559 0.92739 0.88103 0.90899 0.92419 0.88519 0.95889 0.98579 0.92376 0.82558 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.89 71.98 0.71 -1.40 16 2 C -0.08 -1.32 6.07 29.85 0.18 -1.14 16 3 C -0.08 -1.79 5.13 -19.86 -0.10 -1.89 16 4 C -0.13 -3.73 9.70 22.27 0.22 -3.52 16 5 C -0.13 -4.62 7.21 22.27 0.16 -4.46 16 6 C -0.08 -2.27 3.11 -19.86 -0.06 -2.33 16 7 C -0.04 -1.11 0.59 -53.68 -0.03 -1.14 16 8 C -0.15 -3.32 7.61 71.98 0.55 -2.77 16 9 C -0.12 -3.33 7.66 71.98 0.55 -2.78 16 10 C 0.51 22.65 4.87 87.66 0.43 23.07 16 11 O -0.60 -33.17 15.62 -3.03 -0.05 -33.21 16 12 N -0.60 -27.19 2.21 -851.12 -1.88 -29.07 16 13 C 0.07 2.38 7.90 127.77 1.01 3.39 16 14 C 0.26 14.72 5.14 85.63 0.44 15.16 16 15 C -0.54 -32.26 9.39 25.60 0.24 -32.02 16 16 H 0.05 2.96 7.13 -2.91 -0.02 2.94 16 17 C 0.01 0.54 5.46 84.65 0.46 1.00 16 18 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 19 Si 0.96 46.53 29.54 68.60 2.03 48.56 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 23 C -0.10 -1.92 8.84 22.27 0.20 -1.73 16 24 C -0.11 -1.98 9.70 22.27 0.22 -1.77 16 25 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 29 H 0.09 1.08 8.09 -2.38 -0.02 1.06 16 30 H 0.11 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.09 3.89 5.30 -2.91 -0.02 3.88 16 32 H 0.10 1.53 7.35 -2.38 -0.02 1.51 16 33 H 0.05 1.33 8.12 -2.39 -0.02 1.31 16 34 H 0.08 1.74 4.51 -2.39 -0.01 1.73 16 35 H 0.04 1.21 8.03 -2.38 -0.02 1.19 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.10 1.95 7.88 -2.38 -0.02 1.94 16 38 H 0.07 2.07 7.11 -2.38 -0.02 2.05 16 39 H 0.06 2.08 8.09 -2.39 -0.02 2.07 16 40 H 0.10 2.90 3.40 -2.39 -0.01 2.89 16 41 H 0.02 1.32 8.07 -2.38 -0.02 1.30 16 42 H 0.00 -0.25 7.50 -2.39 -0.02 -0.27 16 43 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.16 2.00 7.27 -2.91 -0.02 1.98 16 45 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -77.61 353.18 6.51 -71.10 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.96 Total: 14.24 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 5.17 Total: -14.33 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -1.60 Total: -86.35 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.05 Total: -33.21 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -77.61 6.51 -71.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267334628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.580 kcal (2) G-P(sol) polarization free energy of solvation -77.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds