Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47203 * 2 1 4 4 C 1.38235 * 119.99657 * 269.72055 * 3 2 1 5 5 C 1.38234 * 119.99562 * 179.76250 * 4 3 2 6 6 C 1.38243 * 120.00251 * 0.51866 * 5 4 3 7 7 C 1.50699 * 120.00203 * 179.72108 * 6 5 4 8 8 C 1.52994 * 109.47236 * 128.27478 * 7 6 5 9 9 C 1.53006 * 109.46698 * 248.27738 * 7 6 5 10 10 C 1.50702 * 109.46944 * 8.27563 * 7 6 5 11 11 O 1.21291 * 119.99849 * 245.15691 * 10 7 6 12 12 N 1.34770 * 120.00122 * 65.16095 * 10 7 6 13 13 C 1.37104 * 120.00094 * 4.06522 * 12 10 7 14 14 H 1.08002 * 119.99707 * 322.83533 * 13 12 10 15 15 C 1.38948 * 119.99864 * 142.83113 * 13 12 10 16 16 N 1.31411 * 119.99879 * 158.14523 * 15 13 12 17 17 Si 1.86800 * 120.00273 * 338.14298 * 15 13 12 18 18 H 1.48497 * 109.47117 * 95.14351 * 17 15 13 19 19 H 1.48497 * 109.47225 * 215.14645 * 17 15 13 20 20 H 1.48507 * 109.46973 * 335.14682 * 17 15 13 21 21 C 1.46497 * 120.00172 * 184.06838 * 12 10 7 22 22 C 1.53002 * 109.47184 * 84.94357 * 21 12 10 23 23 C 1.38232 * 119.99405 * 359.74310 * 6 5 4 24 24 C 1.38230 * 120.00159 * 90.00363 * 3 2 1 25 25 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46840 * 299.99921 * 1 2 3 27 27 H 1.09002 * 109.47034 * 59.99881 * 1 2 3 28 28 H 1.09002 * 109.46696 * 239.99595 * 2 1 3 29 29 H 1.09002 * 109.47034 * 120.00119 * 2 1 3 30 30 H 1.07996 * 120.00362 * 0.02562 * 4 3 2 31 31 H 1.08006 * 120.00242 * 180.23423 * 5 4 3 32 32 H 1.09011 * 109.46776 * 71.60570 * 8 7 6 33 33 H 1.08995 * 109.47293 * 191.60048 * 8 7 6 34 34 H 1.08997 * 109.47421 * 311.61066 * 8 7 6 35 35 H 1.08996 * 109.47114 * 55.26518 * 9 7 6 36 36 H 1.09006 * 109.46325 * 175.26354 * 9 7 6 37 37 H 1.08994 * 109.47209 * 295.26228 * 9 7 6 38 38 H 0.96998 * 120.00037 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.47432 * 204.94219 * 21 12 10 40 40 H 1.08999 * 109.47182 * 324.94106 * 21 12 10 41 41 H 1.08998 * 109.47335 * 184.22264 * 22 21 12 42 42 H 1.09000 * 109.47054 * 304.22387 * 22 21 12 43 43 H 1.08995 * 109.46918 * 64.22128 * 22 21 12 44 44 H 1.08007 * 119.99705 * 179.97438 * 23 6 5 45 45 H 1.08006 * 119.99936 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0704 -1.1972 5 6 2.7244 3.3753 -1.1972 6 6 2.9548 4.0271 0.0000 7 6 3.4581 5.4476 0.0000 8 6 2.5607 6.3065 0.8931 9 6 4.8914 5.4807 0.5343 10 6 3.4335 5.9891 -1.4062 11 8 4.4716 6.2772 -1.9633 12 7 2.2580 6.1535 -2.0445 13 6 1.0804 5.9073 -1.3868 14 1 1.0151 5.0897 -0.6842 15 6 -0.0288 6.7098 -1.6243 16 7 -1.2345 6.2589 -1.3600 17 14 0.1939 8.4294 -2.3190 18 1 0.0360 8.3912 -3.7950 19 1 -0.8277 9.3353 -1.7351 20 1 1.5505 8.9287 -1.9791 21 6 2.2383 6.5950 -3.4412 22 6 2.4026 5.3838 -4.3614 23 6 2.7241 3.3755 1.1971 24 6 2.2628 2.0724 1.1971 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0921 1.5600 -2.1324 31 1 2.9051 3.8843 -2.1325 32 1 2.7347 6.0490 1.9379 33 1 2.7923 7.3598 0.7351 34 1 1.5160 6.1226 0.6427 35 1 5.5131 4.8033 -0.0509 36 1 5.2849 6.4943 0.4559 37 1 4.8972 5.1685 1.5786 38 1 -2.0089 6.8190 -1.5261 39 1 1.2889 7.0866 -3.6537 40 1 3.0561 7.2950 -3.6125 41 1 2.4633 5.7195 -5.3967 42 1 3.3154 4.8491 -4.0988 43 1 1.5462 4.7198 -4.2444 44 1 2.9045 3.8845 2.1325 45 1 2.0825 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267542048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = -11.708311 kcal Electronic energy + Delta-G solvation = -24778.346867 eV Core-core repulsion = 21567.827769 eV Total energy + Delta-G solvation = -3210.519098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.16813 -38.31738 -35.41514 -34.97309 -32.73872 -32.08327 -30.47397 -29.89641 -28.27994 -26.46151 -25.07099 -23.98085 -23.32605 -21.92383 -21.26663 -20.07305 -18.53179 -17.08695 -16.44231 -15.47077 -15.35602 -15.00349 -14.51470 -14.05265 -13.83450 -13.46041 -13.41740 -13.18346 -12.92488 -12.87172 -12.68997 -12.50806 -12.29267 -11.96708 -11.80320 -11.62033 -11.42790 -11.29700 -11.20660 -11.00342 -10.94052 -10.90048 -10.68740 -10.40872 -10.35008 -10.07799 -9.84113 -9.80528 -9.12045 -8.46963 -8.31535 -7.91558 -7.72429 -6.45040 -4.01358 1.89372 1.99827 3.03968 3.21469 3.29977 3.69813 4.13054 4.30081 4.36209 4.92253 5.07072 5.14721 5.36578 5.41669 5.52787 5.57766 5.66569 5.76797 5.77794 5.83690 5.94735 5.97122 6.00875 6.04667 6.07762 6.12473 6.24639 6.27566 6.39581 6.41128 6.41569 6.52487 6.54897 6.58720 6.63345 6.70398 6.73988 6.83984 7.01895 7.11899 7.25735 7.27123 7.38747 7.56905 8.09755 8.29558 8.95989 9.36163 9.68923 10.63695 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.006996 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.179993 B = 4001.406640 C = 4557.415243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.094 4.094 4 C -0.116 4.116 5 C -0.090 4.090 6 C -0.049 4.049 7 C -0.025 4.025 8 C -0.145 4.145 9 C -0.118 4.118 10 C 0.490 3.510 11 O -0.597 6.597 12 N -0.461 5.461 13 C -0.338 4.338 14 H 0.119 0.881 15 C 0.066 3.934 16 N -0.857 5.857 17 Si 0.869 3.131 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.262 1.262 21 C 0.096 3.904 22 C -0.157 4.157 23 C -0.112 4.112 24 C -0.123 4.123 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.273 0.727 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.117 0.883 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 -7.331 3.094 8.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.094 4.094 4 C -0.134 4.134 5 C -0.108 4.108 6 C -0.049 4.049 7 C -0.028 4.028 8 C -0.202 4.202 9 C -0.175 4.175 10 C 0.279 3.721 11 O -0.481 6.481 12 N -0.181 5.181 13 C -0.465 4.465 14 H 0.136 0.864 15 C -0.141 4.141 16 N -0.492 5.492 17 Si 0.697 3.303 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.186 1.186 21 C -0.027 4.027 22 C -0.215 4.215 23 C -0.130 4.130 24 C -0.141 4.141 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.142 0.858 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.135 0.865 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.086 -7.149 2.807 8.699 hybrid contribution -0.342 1.060 -0.448 1.201 sum 3.744 -6.089 2.359 7.527 Atomic orbital electron populations 1.21746 0.94914 1.00979 1.02731 1.20466 0.96096 0.93126 1.01959 1.19729 1.00348 0.95989 0.93357 1.20870 1.00541 0.94971 0.97043 1.21222 0.97331 0.94016 0.98232 1.19476 0.98122 0.94132 0.93202 1.19451 0.96388 0.92293 0.94655 1.22141 1.03455 0.98191 0.96375 1.21622 0.94323 1.02294 0.99306 1.20157 0.83545 0.81169 0.87230 1.90532 1.33096 1.55770 1.68747 1.43791 1.05879 1.60090 1.08364 1.19291 0.86010 1.15401 1.25773 0.86350 1.25292 0.94849 0.97773 0.96144 1.69771 0.97783 1.36229 1.45445 0.87074 0.78937 0.85673 0.78660 1.20341 1.21632 1.18639 1.21568 1.01040 0.96807 0.83304 1.22022 1.01994 0.99264 0.98211 1.20822 1.00274 0.94536 0.97338 1.20795 1.01373 0.94995 0.96956 0.93022 0.92524 0.92264 0.91622 0.91688 0.86910 0.85760 0.93791 0.93232 0.87581 0.92632 0.92225 0.92912 0.91626 0.91440 0.91710 0.93002 0.92779 0.92030 0.86517 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 37.16 0.37 -1.43 16 2 C -0.08 -0.98 6.07 -27.88 -0.17 -1.15 16 3 C -0.09 -1.47 5.13 -104.63 -0.54 -2.01 16 4 C -0.12 -2.02 9.70 -39.58 -0.38 -2.40 16 5 C -0.09 -1.77 7.66 -39.58 -0.30 -2.07 16 6 C -0.05 -0.93 3.24 -104.62 -0.34 -1.27 16 7 C -0.02 -0.49 0.59 -156.81 -0.09 -0.59 16 8 C -0.14 -2.79 7.39 37.15 0.27 -2.52 16 9 C -0.12 -2.07 7.61 37.16 0.28 -1.79 16 10 C 0.49 11.24 4.85 -10.99 -0.05 11.18 16 11 O -0.60 -14.83 15.62 5.55 0.09 -14.75 16 12 N -0.46 -10.74 1.45 -114.81 -0.17 -10.90 16 13 C -0.34 -8.31 6.07 -14.93 -0.09 -8.40 16 14 H 0.12 3.06 4.60 -52.49 -0.24 2.82 16 15 C 0.07 1.69 5.28 -17.47 -0.09 1.60 16 16 N -0.86 -22.93 13.96 55.50 0.77 -22.15 16 17 Si 0.87 20.18 25.00 -169.99 -4.25 15.93 16 18 H -0.28 -6.23 6.67 56.52 0.38 -5.85 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.10 2.10 4.73 -4.04 -0.02 2.08 16 22 C -0.16 -2.99 9.64 37.16 0.36 -2.63 16 23 C -0.11 -1.88 8.95 -39.59 -0.35 -2.23 16 24 C -0.12 -1.91 9.70 -39.59 -0.38 -2.29 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.12 2.64 4.92 -52.48 -0.26 2.39 16 32 H 0.04 0.71 7.38 -51.92 -0.38 0.33 16 33 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 34 H 0.11 2.32 4.96 -51.93 -0.26 2.06 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 37 H 0.05 0.78 8.01 -51.93 -0.42 0.36 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.07 1.52 3.44 -51.93 -0.18 1.34 16 40 H 0.06 1.42 7.52 -51.93 -0.39 1.03 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 1.04 7.64 -51.93 -0.40 0.65 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.12 1.74 7.33 -52.48 -0.38 1.35 16 45 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -27.96 344.80 -7.02 -34.98 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.13 Total: 7.60 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -1.54 Total: -15.90 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.61 Total: -33.05 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.09 Total: -14.75 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.25 Total: 15.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.96 -7.02 -34.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267542048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.268 kcal (2) G-P(sol) polarization free energy of solvation -27.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds