Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47203 * 2 1 4 4 C 1.38235 * 119.99657 * 269.72055 * 3 2 1 5 5 C 1.38234 * 119.99562 * 179.76250 * 4 3 2 6 6 C 1.38243 * 120.00251 * 0.51866 * 5 4 3 7 7 C 1.50699 * 120.00203 * 179.72108 * 6 5 4 8 8 C 1.52994 * 109.47236 * 128.27478 * 7 6 5 9 9 C 1.53006 * 109.46698 * 248.27738 * 7 6 5 10 10 C 1.50702 * 109.46944 * 8.27563 * 7 6 5 11 11 O 1.21291 * 119.99849 * 245.15691 * 10 7 6 12 12 N 1.34770 * 120.00122 * 65.16095 * 10 7 6 13 13 C 1.37104 * 120.00094 * 4.06522 * 12 10 7 14 14 H 1.08002 * 119.99707 * 322.83533 * 13 12 10 15 15 C 1.38948 * 119.99864 * 142.83113 * 13 12 10 16 16 N 1.31411 * 119.99879 * 158.14523 * 15 13 12 17 17 Si 1.86800 * 120.00273 * 338.14298 * 15 13 12 18 18 H 1.48497 * 109.47117 * 95.14351 * 17 15 13 19 19 H 1.48497 * 109.47225 * 215.14645 * 17 15 13 20 20 H 1.48507 * 109.46973 * 335.14682 * 17 15 13 21 21 C 1.46497 * 120.00172 * 184.06838 * 12 10 7 22 22 C 1.53002 * 109.47184 * 84.94357 * 21 12 10 23 23 C 1.38232 * 119.99405 * 359.74310 * 6 5 4 24 24 C 1.38230 * 120.00159 * 90.00363 * 3 2 1 25 25 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46840 * 299.99921 * 1 2 3 27 27 H 1.09002 * 109.47034 * 59.99881 * 1 2 3 28 28 H 1.09002 * 109.46696 * 239.99595 * 2 1 3 29 29 H 1.09002 * 109.47034 * 120.00119 * 2 1 3 30 30 H 1.07996 * 120.00362 * 0.02562 * 4 3 2 31 31 H 1.08006 * 120.00242 * 180.23423 * 5 4 3 32 32 H 1.09011 * 109.46776 * 71.60570 * 8 7 6 33 33 H 1.08995 * 109.47293 * 191.60048 * 8 7 6 34 34 H 1.08997 * 109.47421 * 311.61066 * 8 7 6 35 35 H 1.08996 * 109.47114 * 55.26518 * 9 7 6 36 36 H 1.09006 * 109.46325 * 175.26354 * 9 7 6 37 37 H 1.08994 * 109.47209 * 295.26228 * 9 7 6 38 38 H 0.96998 * 120.00037 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.47432 * 204.94219 * 21 12 10 40 40 H 1.08999 * 109.47182 * 324.94106 * 21 12 10 41 41 H 1.08998 * 109.47335 * 184.22264 * 22 21 12 42 42 H 1.09000 * 109.47054 * 304.22387 * 22 21 12 43 43 H 1.08995 * 109.46918 * 64.22128 * 22 21 12 44 44 H 1.08007 * 119.99705 * 179.97438 * 23 6 5 45 45 H 1.08006 * 119.99936 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0704 -1.1972 5 6 2.7244 3.3753 -1.1972 6 6 2.9548 4.0271 0.0000 7 6 3.4581 5.4476 0.0000 8 6 2.5607 6.3065 0.8931 9 6 4.8914 5.4807 0.5343 10 6 3.4335 5.9891 -1.4062 11 8 4.4716 6.2772 -1.9633 12 7 2.2580 6.1535 -2.0445 13 6 1.0804 5.9073 -1.3868 14 1 1.0151 5.0897 -0.6842 15 6 -0.0288 6.7098 -1.6243 16 7 -1.2345 6.2589 -1.3600 17 14 0.1939 8.4294 -2.3190 18 1 0.0360 8.3912 -3.7950 19 1 -0.8277 9.3353 -1.7351 20 1 1.5505 8.9287 -1.9791 21 6 2.2383 6.5950 -3.4412 22 6 2.4026 5.3838 -4.3614 23 6 2.7241 3.3755 1.1971 24 6 2.2628 2.0724 1.1971 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0921 1.5600 -2.1324 31 1 2.9051 3.8843 -2.1325 32 1 2.7347 6.0490 1.9379 33 1 2.7923 7.3598 0.7351 34 1 1.5160 6.1226 0.6427 35 1 5.5131 4.8033 -0.0509 36 1 5.2849 6.4943 0.4559 37 1 4.8972 5.1685 1.5786 38 1 -2.0089 6.8190 -1.5261 39 1 1.2889 7.0866 -3.6537 40 1 3.0561 7.2950 -3.6125 41 1 2.4633 5.7195 -5.3967 42 1 3.3154 4.8491 -4.0988 43 1 1.5462 4.7198 -4.2444 44 1 2.9045 3.8845 2.1325 45 1 2.0825 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267542048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = -24.881958 kcal Electronic energy + Delta-G solvation = -24778.918119 eV Core-core repulsion = 21567.827769 eV Total energy + Delta-G solvation = -3211.090350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77881 -39.78916 -37.13191 -36.56287 -34.15111 -33.83144 -31.89800 -31.49565 -29.52033 -27.97005 -26.95267 -25.49263 -24.65007 -23.35647 -22.67327 -21.50917 -20.28711 -18.77997 -18.16794 -17.22885 -16.92043 -16.38762 -15.96449 -15.59448 -15.38843 -15.06481 -14.93710 -14.49768 -14.38019 -14.31911 -14.15382 -14.04234 -13.86064 -13.54431 -13.22109 -13.16687 -12.96978 -12.86297 -12.68856 -12.51059 -12.48286 -12.17324 -12.08214 -12.00607 -11.69865 -11.63099 -11.56022 -11.35354 -10.99823 -10.30973 -9.65304 -9.64637 -9.20955 -8.42220 -5.98399 0.57957 0.66674 1.16453 1.30777 1.40611 1.88490 2.20297 2.61788 2.97312 3.01858 3.83227 3.84483 4.03636 4.06080 4.12721 4.26575 4.30684 4.37719 4.42268 4.44799 4.45745 4.59759 4.67809 4.77216 4.79244 4.81089 4.83986 4.93447 4.97545 5.04365 5.10441 5.13369 5.14305 5.21493 5.25197 5.32817 5.33772 5.45897 5.50563 5.66970 5.68684 5.84622 5.87088 6.18153 6.26923 6.34713 7.02220 7.46438 7.81869 8.69361 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.006996 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.179993 B = 4001.406640 C = 4557.415243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.117 4.117 6 C -0.067 4.067 7 C -0.026 4.026 8 C -0.137 4.137 9 C -0.111 4.111 10 C 0.484 3.516 11 O -0.621 6.621 12 N -0.468 5.468 13 C -0.318 4.318 14 H 0.105 0.895 15 C 0.032 3.968 16 N -0.892 5.892 17 Si 0.910 3.090 18 H -0.265 1.265 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.086 3.914 22 C -0.145 4.145 23 C -0.114 4.114 24 C -0.121 4.121 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.276 0.724 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.139 0.861 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -8.674 4.401 10.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.135 4.135 6 C -0.067 4.067 7 C -0.029 4.029 8 C -0.194 4.194 9 C -0.169 4.169 10 C 0.275 3.725 11 O -0.507 6.507 12 N -0.188 5.188 13 C -0.445 4.445 14 H 0.123 0.877 15 C -0.171 4.171 16 N -0.530 5.530 17 Si 0.738 3.262 18 H -0.191 1.191 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.037 4.037 22 C -0.203 4.203 23 C -0.132 4.132 24 C -0.139 4.139 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.157 0.843 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.369 -8.490 4.100 10.391 hybrid contribution -0.378 1.406 -0.846 1.684 sum 3.991 -7.084 3.253 8.758 Atomic orbital electron populations 1.21730 0.94809 1.02224 1.01441 1.20532 0.95987 0.91156 1.03666 1.20134 0.98959 0.97538 0.92678 1.21055 1.00730 0.94432 0.98502 1.21154 0.99513 0.95266 0.97606 1.19468 0.99498 0.93731 0.94001 1.19511 0.97936 0.92957 0.92505 1.22029 1.01458 0.97524 0.98365 1.21592 0.92524 1.01740 1.01014 1.20808 0.82898 0.80269 0.88528 1.90500 1.33732 1.56745 1.69758 1.43892 1.05724 1.60254 1.08963 1.19141 0.86141 1.14381 1.24838 0.87745 1.25670 0.94708 0.99783 0.96971 1.69820 0.98330 1.37217 1.47613 0.86407 0.77938 0.82957 0.78912 1.19105 1.21483 1.19935 1.21702 1.00561 0.97981 0.83407 1.21912 1.01198 0.97825 0.99358 1.21093 0.99736 0.95209 0.97187 1.21216 0.99868 0.94561 0.98264 0.90555 0.93049 0.94313 0.90665 0.89279 0.86180 0.88386 0.90274 0.94236 0.90356 0.93577 0.92942 0.89575 0.91426 0.91904 0.92042 0.89855 0.93526 0.92776 0.84284 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.89 71.98 0.71 -2.49 16 2 C -0.08 -1.66 6.07 29.85 0.18 -1.48 16 3 C -0.09 -2.72 5.13 -19.87 -0.10 -2.82 16 4 C -0.13 -4.46 9.70 22.27 0.22 -4.24 16 5 C -0.12 -4.68 7.66 22.27 0.17 -4.51 16 6 C -0.07 -2.50 3.24 -19.86 -0.06 -2.57 16 7 C -0.03 -1.03 0.59 -53.67 -0.03 -1.06 16 8 C -0.14 -5.17 7.39 71.98 0.53 -4.64 16 9 C -0.11 -3.77 7.61 71.98 0.55 -3.23 16 10 C 0.48 22.61 4.85 87.66 0.42 23.03 16 11 O -0.62 -31.45 15.62 -3.06 -0.05 -31.50 16 12 N -0.47 -22.22 1.45 -635.54 -0.92 -23.14 16 13 C -0.32 -15.91 6.07 84.04 0.51 -15.40 16 14 H 0.11 5.54 4.60 -2.91 -0.01 5.53 16 15 C 0.03 1.67 5.28 84.93 0.45 2.11 16 16 N -0.89 -48.40 13.96 21.66 0.30 -48.10 16 17 Si 0.91 41.87 25.00 68.60 1.72 43.58 16 18 H -0.26 -11.57 6.67 99.48 0.66 -10.91 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 21 C 0.09 3.82 4.73 86.38 0.41 4.23 16 22 C -0.14 -5.54 9.64 71.98 0.69 -4.84 16 23 C -0.11 -3.58 8.95 22.27 0.20 -3.38 16 24 C -0.12 -3.40 9.70 22.27 0.22 -3.19 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 29 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 30 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 31 H 0.10 4.35 4.92 -2.91 -0.01 4.34 16 32 H 0.08 2.38 7.38 -2.38 -0.02 2.36 16 33 H 0.04 1.53 8.09 -2.39 -0.02 1.51 16 34 H 0.08 3.44 4.96 -2.39 -0.01 3.42 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.82 8.04 -2.38 -0.02 1.80 16 37 H 0.09 2.30 8.01 -2.39 -0.02 2.28 16 38 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 39 H 0.06 2.82 3.44 -2.38 -0.01 2.82 16 40 H 0.06 2.73 7.52 -2.39 -0.02 2.71 16 41 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.05 1.83 7.64 -2.39 -0.02 1.81 16 43 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.14 3.63 7.33 -2.91 -0.02 3.61 16 45 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -61.14 344.80 7.04 -54.10 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.92 Total: 29.54 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 5.06 Total: -24.48 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -0.62 Total: -71.24 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.05 Total: -31.50 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.72 Total: 43.58 kcal Total: -61.14 7.04 -54.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267542048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.217 kcal (2) G-P(sol) polarization free energy of solvation -61.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds