Wall clock time and date at job start Tue Mar 31 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47253 * 2 1 4 4 C 1.53003 * 109.47340 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47215 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47215 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.46874 * 54.99575 * 6 5 4 8 8 C 1.53001 * 109.47456 * 174.99914 * 6 5 4 9 9 N 1.46501 * 109.47037 * 294.99733 * 6 5 4 10 10 C 1.34774 * 120.00045 * 154.99975 * 9 6 5 11 11 O 1.21582 * 119.99909 * 359.97438 * 10 9 6 12 12 C 1.47644 * 119.99959 * 180.02562 * 10 9 6 13 13 C 1.40017 * 119.89281 * 359.72506 * 12 10 9 14 14 C 1.36316 * 120.10481 * 179.76179 * 13 12 10 15 15 C 1.40896 * 119.89195 * 0.51348 * 14 13 12 16 16 C 1.41105 * 120.10332 * 179.71912 * 15 14 13 17 17 H 1.07999 * 119.99846 * 204.64428 * 16 15 14 18 18 C 1.40224 * 120.00430 * 24.64704 * 16 15 14 19 19 N 1.30652 * 119.99788 * 17.87096 * 18 16 15 20 20 Si 1.86799 * 120.00259 * 197.87781 * 18 16 15 21 21 H 1.48501 * 109.46865 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47227 * 119.99832 * 20 18 16 23 23 H 1.48502 * 109.46790 * 239.99673 * 20 18 16 24 24 C 1.40892 * 119.79199 * 359.73674 * 15 14 13 25 25 C 1.36321 * 119.89051 * 0.02562 * 24 15 14 26 26 H 1.08998 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47122 * 300.00557 * 1 2 3 28 28 H 1.09006 * 109.46950 * 60.00011 * 1 2 3 29 29 H 1.09001 * 109.47608 * 240.00016 * 2 1 3 30 30 H 1.09003 * 109.47439 * 119.99420 * 2 1 3 31 31 H 1.08997 * 109.47175 * 59.99829 * 3 2 1 32 32 H 1.09003 * 109.46715 * 299.99577 * 3 2 1 33 33 H 1.09004 * 109.47170 * 59.99360 * 4 3 2 34 34 H 1.09006 * 109.46815 * 299.99960 * 4 3 2 35 35 H 1.08997 * 109.47241 * 59.99754 * 5 4 3 36 36 H 1.09006 * 109.47193 * 299.99725 * 5 4 3 37 37 H 1.09005 * 109.46841 * 299.99962 * 8 6 5 38 38 H 1.09000 * 109.47086 * 179.97438 * 8 6 5 39 39 H 1.08995 * 109.46842 * 59.99320 * 8 6 5 40 40 H 0.96997 * 119.99905 * 335.00337 * 9 6 5 41 41 H 1.07994 * 119.94607 * 0.02562 * 13 12 10 42 42 H 1.07994 * 120.05779 * 180.22805 * 14 13 12 43 43 H 0.97004 * 119.99769 * 180.02562 * 19 18 16 44 44 H 1.07997 * 120.05429 * 179.97438 * 24 15 14 45 45 H 1.08005 * 119.94506 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0000 7 1 5.9733 2.2958 -0.8421 8 6 6.1201 4.3220 -0.1251 9 7 6.0983 2.3008 1.2516 10 6 7.3203 1.7342 1.2992 11 8 8.0172 1.7076 0.3032 12 6 7.8122 1.1449 2.5604 13 6 7.0096 1.1810 3.7071 14 6 7.4575 0.6340 4.8726 15 6 8.7346 0.0411 4.9249 16 6 9.2050 -0.5212 6.1305 17 1 10.2668 -0.6099 6.3068 18 6 8.2940 -0.9650 7.0997 19 7 7.0489 -1.1879 6.7724 20 14 8.8603 -1.2372 8.8588 21 1 10.3061 -0.9162 8.9686 22 1 8.0865 -0.3562 9.7699 23 1 8.6388 -2.6563 9.2360 24 6 9.5406 0.0119 3.7696 25 6 9.0821 0.5573 2.6074 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 3.7170 3.3983 0.8904 36 1 3.7163 3.3994 -0.8896 37 1 5.7567 4.7568 -1.0564 38 1 7.2101 4.3220 -0.1246 39 1 5.7567 4.9111 0.7169 40 1 5.5422 2.3217 2.0460 41 1 6.0325 1.6393 3.6671 42 1 6.8364 0.6590 5.7557 43 1 6.4186 -1.4945 7.4429 44 1 10.5203 -0.4410 3.8050 45 1 9.6994 0.5357 1.7214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270306086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:46 Heat of formation + Delta-G solvation = -63.973694 kcal Electronic energy + Delta-G solvation = -22369.520126 eV Core-core repulsion = 19156.734631 eV Total energy + Delta-G solvation = -3212.785495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.29174 -37.42461 -36.55205 -34.92825 -33.85747 -31.94271 -30.56314 -29.50186 -29.35717 -26.46296 -25.84795 -22.83316 -21.95321 -21.05378 -21.01385 -20.36638 -19.61031 -17.51797 -16.74680 -16.15572 -15.55232 -15.30727 -14.41363 -14.15772 -14.00233 -13.94769 -13.78689 -13.46681 -13.22553 -12.89457 -12.78551 -12.38859 -12.13185 -12.08692 -11.99376 -11.81219 -11.66132 -11.36004 -11.27618 -11.15397 -10.98971 -10.94653 -10.78355 -10.62654 -10.54772 -10.36629 -10.02434 -9.55553 -9.34371 -8.90722 -8.53338 -7.71008 -7.52950 -7.03130 -4.59424 2.25152 2.90873 2.95239 3.00831 3.04573 3.74422 3.86446 3.89903 4.54454 4.58354 4.81983 4.91549 5.07880 5.14874 5.19429 5.42510 5.53914 5.57265 5.59762 5.61211 5.70619 5.77800 5.83043 5.90977 5.91895 5.97422 5.99064 6.06819 6.14108 6.22706 6.33200 6.34117 6.36143 6.42667 6.77786 6.83509 7.00311 7.12494 7.15033 7.44766 7.67301 7.81020 7.87156 8.08178 8.30537 8.40936 8.64109 8.76395 9.13935 9.88917 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.003631 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.591362 B = 7710.209239 C = 9230.253640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.122 4.122 5 C -0.125 4.125 6 C 0.143 3.857 7 H 0.082 0.918 8 C -0.162 4.162 9 N -0.735 5.735 10 C 0.572 3.428 11 O -0.577 6.577 12 C -0.284 4.284 13 C -0.063 4.063 14 C -0.178 4.178 15 C 0.128 3.872 16 C -0.443 4.443 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.772 5.772 20 Si 0.912 3.088 21 H -0.257 1.257 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.239 4.239 25 C -0.022 4.022 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.395 0.605 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.098 0.902 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 4.957 -6.458 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.160 4.160 5 C -0.163 4.163 6 C 0.038 3.962 7 H 0.100 0.900 8 C -0.220 4.220 9 N -0.388 5.388 10 C 0.367 3.633 11 O -0.459 6.459 12 C -0.288 4.288 13 C -0.082 4.082 14 C -0.198 4.198 15 C 0.125 3.875 16 C -0.471 4.471 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.395 5.395 20 Si 0.736 3.264 21 H -0.181 1.181 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.259 4.259 25 C -0.042 4.042 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.230 0.770 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.348 4.847 -7.080 13.442 hybrid contribution -0.211 -0.185 1.215 1.247 sum -10.559 4.662 -5.865 12.947 Atomic orbital electron populations 1.21775 0.96146 1.01446 1.01559 1.21552 0.95562 0.97147 1.02268 1.21615 0.95596 0.96636 1.01699 1.21622 0.94886 0.96591 1.02869 1.21888 0.94460 0.97403 1.02508 1.20815 0.92774 0.94055 0.88564 0.89958 1.22180 1.02291 0.96406 1.01162 1.45990 1.18685 1.61486 1.12637 1.18571 0.79999 0.76059 0.88683 1.90621 1.56990 1.60954 1.37331 1.18934 0.98928 1.17882 0.93059 1.20468 0.96510 0.97949 0.93248 1.20971 0.98574 1.02880 0.97338 1.17787 0.91212 0.86863 0.91621 1.19871 0.94839 1.33012 0.99377 0.89716 1.26095 0.94350 0.92728 1.01487 1.69758 1.04415 1.29325 1.36049 0.86181 0.80601 0.78797 0.80830 1.18072 1.19392 1.19679 1.20722 1.01545 1.10416 0.93212 1.20364 0.93541 0.93556 0.96713 0.92919 0.92824 0.92991 0.92138 0.91792 0.92115 0.92332 0.91997 0.91350 0.91618 0.90940 0.92360 0.92014 0.92788 0.76954 0.89396 0.86245 0.90327 0.88432 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.15 0.37 -0.90 16 2 C -0.13 -1.22 5.93 -26.73 -0.16 -1.38 16 3 C -0.12 -1.12 5.21 -26.73 -0.14 -1.26 16 4 C -0.12 -1.36 5.10 -26.73 -0.14 -1.50 16 5 C -0.12 -1.33 4.75 -26.73 -0.13 -1.45 16 6 C 0.14 1.99 2.57 -67.93 -0.17 1.82 16 7 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 8 C -0.16 -2.10 9.48 37.16 0.35 -1.74 16 9 N -0.74 -12.18 4.48 -54.81 -0.25 -12.42 16 10 C 0.57 12.15 7.73 -12.42 -0.10 12.06 16 11 O -0.58 -13.74 15.98 5.29 0.08 -13.65 16 12 C -0.28 -6.50 5.89 -104.73 -0.62 -7.12 16 13 C -0.06 -1.39 9.47 -39.61 -0.38 -1.76 16 14 C -0.18 -4.37 8.64 -39.27 -0.34 -4.71 16 15 C 0.13 3.28 5.58 -106.80 -0.60 2.68 16 16 C -0.44 -11.06 9.04 -37.75 -0.34 -11.40 16 17 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 19 N -0.77 -18.48 10.95 55.56 0.61 -17.87 16 20 Si 0.91 17.26 29.60 -169.99 -5.03 12.23 16 21 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 23 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 24 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 25 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.88 7.75 -51.93 -0.40 0.47 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.40 5.95 6.60 -40.82 -0.27 5.68 16 41 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 42 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 43 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 44 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.10 2.31 7.63 -52.48 -0.40 1.91 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -27.71 368.24 -9.85 -37.57 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.59 Total: 10.75 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -3.23 Total: -22.15 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.36 Total: -30.30 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.08 Total: -13.65 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.71 -9.85 -37.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270306086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.406 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds