Wall clock time and date at job start Tue Mar 31 2020 06:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47253 * 2 1 4 4 C 1.53003 * 109.47340 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47215 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47215 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.46874 * 54.99575 * 6 5 4 8 8 C 1.53001 * 109.47456 * 174.99914 * 6 5 4 9 9 N 1.46501 * 109.47037 * 294.99733 * 6 5 4 10 10 C 1.34774 * 120.00045 * 154.99975 * 9 6 5 11 11 O 1.21582 * 119.99909 * 359.97438 * 10 9 6 12 12 C 1.47644 * 119.99959 * 180.02562 * 10 9 6 13 13 C 1.40017 * 119.89281 * 359.72506 * 12 10 9 14 14 C 1.36316 * 120.10481 * 179.76179 * 13 12 10 15 15 C 1.40896 * 119.89195 * 0.51348 * 14 13 12 16 16 C 1.41105 * 120.10332 * 179.71912 * 15 14 13 17 17 H 1.07999 * 119.99846 * 204.64428 * 16 15 14 18 18 C 1.40224 * 120.00430 * 24.64704 * 16 15 14 19 19 N 1.30652 * 119.99788 * 17.87096 * 18 16 15 20 20 Si 1.86799 * 120.00259 * 197.87781 * 18 16 15 21 21 H 1.48501 * 109.46865 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47227 * 119.99832 * 20 18 16 23 23 H 1.48502 * 109.46790 * 239.99673 * 20 18 16 24 24 C 1.40892 * 119.79199 * 359.73674 * 15 14 13 25 25 C 1.36321 * 119.89051 * 0.02562 * 24 15 14 26 26 H 1.08998 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47122 * 300.00557 * 1 2 3 28 28 H 1.09006 * 109.46950 * 60.00011 * 1 2 3 29 29 H 1.09001 * 109.47608 * 240.00016 * 2 1 3 30 30 H 1.09003 * 109.47439 * 119.99420 * 2 1 3 31 31 H 1.08997 * 109.47175 * 59.99829 * 3 2 1 32 32 H 1.09003 * 109.46715 * 299.99577 * 3 2 1 33 33 H 1.09004 * 109.47170 * 59.99360 * 4 3 2 34 34 H 1.09006 * 109.46815 * 299.99960 * 4 3 2 35 35 H 1.08997 * 109.47241 * 59.99754 * 5 4 3 36 36 H 1.09006 * 109.47193 * 299.99725 * 5 4 3 37 37 H 1.09005 * 109.46841 * 299.99962 * 8 6 5 38 38 H 1.09000 * 109.47086 * 179.97438 * 8 6 5 39 39 H 1.08995 * 109.46842 * 59.99320 * 8 6 5 40 40 H 0.96997 * 119.99905 * 335.00337 * 9 6 5 41 41 H 1.07994 * 119.94607 * 0.02562 * 13 12 10 42 42 H 1.07994 * 120.05779 * 180.22805 * 14 13 12 43 43 H 0.97004 * 119.99769 * 180.02562 * 19 18 16 44 44 H 1.07997 * 120.05429 * 179.97438 * 24 15 14 45 45 H 1.08005 * 119.94506 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0000 7 1 5.9733 2.2958 -0.8421 8 6 6.1201 4.3220 -0.1251 9 7 6.0983 2.3008 1.2516 10 6 7.3203 1.7342 1.2992 11 8 8.0172 1.7076 0.3032 12 6 7.8122 1.1449 2.5604 13 6 7.0096 1.1810 3.7071 14 6 7.4575 0.6340 4.8726 15 6 8.7346 0.0411 4.9249 16 6 9.2050 -0.5212 6.1305 17 1 10.2668 -0.6099 6.3068 18 6 8.2940 -0.9650 7.0997 19 7 7.0489 -1.1879 6.7724 20 14 8.8603 -1.2372 8.8588 21 1 10.3061 -0.9162 8.9686 22 1 8.0865 -0.3562 9.7699 23 1 8.6388 -2.6563 9.2360 24 6 9.5406 0.0119 3.7696 25 6 9.0821 0.5573 2.6074 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 3.7170 3.3983 0.8904 36 1 3.7163 3.3994 -0.8896 37 1 5.7567 4.7568 -1.0564 38 1 7.2101 4.3220 -0.1246 39 1 5.7567 4.9111 0.7169 40 1 5.5422 2.3217 2.0460 41 1 6.0325 1.6393 3.6671 42 1 6.8364 0.6590 5.7557 43 1 6.4186 -1.4945 7.4429 44 1 10.5203 -0.4410 3.8050 45 1 9.6994 0.5357 1.7214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270306086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:45 Heat of formation + Delta-G solvation = -76.632026 kcal Electronic energy + Delta-G solvation = -22370.069033 eV Core-core repulsion = 19156.734631 eV Total energy + Delta-G solvation = -3213.334402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89169 -39.08066 -37.78807 -36.00249 -35.66449 -33.25442 -31.92158 -31.30181 -30.80535 -27.68291 -27.25226 -24.21737 -23.19759 -22.80777 -21.82999 -21.63076 -21.21974 -19.36478 -18.37465 -17.48272 -17.01518 -16.42753 -15.85452 -15.76053 -15.50916 -15.19558 -14.81303 -14.78305 -14.56340 -14.41150 -13.93046 -13.83877 -13.74410 -13.35399 -13.21250 -12.94235 -12.84630 -12.82154 -12.63164 -12.51360 -12.37169 -12.04654 -11.78929 -11.76548 -11.68171 -11.37862 -11.35232 -11.27690 -11.12002 -10.64147 -9.99534 -9.57321 -9.39802 -8.79426 -6.48193 0.45489 1.14691 1.38726 1.42267 1.55392 2.14113 2.18756 2.46246 2.79769 3.64980 3.69509 4.01388 4.03572 4.19857 4.28980 4.31195 4.33385 4.37975 4.44371 4.49489 4.66572 4.76687 4.79083 4.85665 4.92022 4.94272 4.98937 5.03322 5.07969 5.08840 5.16233 5.21144 5.27102 5.30624 5.32387 5.39844 5.46921 5.54486 5.58431 5.73358 5.83498 5.95587 5.99633 6.22876 6.54109 6.76303 6.77857 6.89474 7.50338 8.16036 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.003631 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.591362 B = 7710.209239 C = 9230.253640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.111 4.111 4 C -0.122 4.122 5 C -0.113 4.113 6 C 0.138 3.862 7 H 0.061 0.939 8 C -0.157 4.157 9 N -0.717 5.717 10 C 0.571 3.429 11 O -0.607 6.607 12 C -0.293 4.293 13 C -0.053 4.053 14 C -0.197 4.197 15 C 0.102 3.898 16 C -0.474 4.474 17 H 0.084 0.916 18 C 0.038 3.962 19 N -0.798 5.798 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.259 1.259 23 H -0.264 1.264 24 C -0.255 4.255 25 C -0.034 4.034 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.030 0.970 39 H 0.067 0.933 40 H 0.405 0.595 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.297 0.703 44 H 0.103 0.897 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.622 6.023 -6.013 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.149 4.149 4 C -0.160 4.160 5 C -0.151 4.151 6 C 0.034 3.966 7 H 0.079 0.921 8 C -0.215 4.215 9 N -0.369 5.369 10 C 0.365 3.635 11 O -0.492 6.492 12 C -0.298 4.298 13 C -0.072 4.072 14 C -0.217 4.217 15 C 0.098 3.902 16 C -0.502 4.502 17 H 0.102 0.898 18 C -0.181 4.181 19 N -0.422 5.422 20 Si 0.807 3.193 21 H -0.181 1.181 22 H -0.184 1.184 23 H -0.188 1.188 24 C -0.274 4.274 25 C -0.053 4.053 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.242 0.758 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.415 5.931 -6.650 15.281 hybrid contribution 0.373 -0.516 0.976 1.165 sum -12.042 5.415 -5.674 14.370 Atomic orbital electron populations 1.21757 0.94994 1.01801 1.02159 1.21573 0.96618 0.97269 1.01434 1.21565 0.94048 0.96598 1.02675 1.21601 0.96270 0.96714 1.01368 1.21842 0.91415 0.97352 1.04483 1.21062 0.95160 0.94126 0.86270 0.92108 1.22132 1.00268 0.95805 1.03308 1.45885 1.17002 1.59860 1.14181 1.18379 0.81222 0.76347 0.87570 1.90601 1.58261 1.62328 1.38038 1.19236 0.98758 1.17528 0.94259 1.20712 0.97617 0.96788 0.92057 1.21009 0.98558 1.04085 0.98021 1.18132 0.92078 0.87659 0.92284 1.20126 0.95353 1.34324 1.00349 0.89791 1.26920 0.94156 0.91759 1.05229 1.69771 1.05434 1.29123 1.37835 0.85069 0.79959 0.79037 0.75210 1.18138 1.18350 1.18829 1.20860 1.02008 1.11138 0.93405 1.20506 0.94338 0.93930 0.96556 0.92776 0.92527 0.92046 0.92506 0.93199 0.91476 0.90884 0.93012 0.93464 0.90075 0.88394 0.89564 0.95101 0.91420 0.75846 0.85943 0.86807 0.89188 0.87912 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 71.98 0.71 -1.50 16 2 C -0.13 -2.35 5.93 30.59 0.18 -2.17 16 3 C -0.11 -1.85 5.21 30.60 0.16 -1.69 16 4 C -0.12 -2.51 5.10 30.59 0.16 -2.35 16 5 C -0.11 -2.07 4.75 30.59 0.15 -1.92 16 6 C 0.14 3.62 2.57 44.99 0.12 3.73 16 7 H 0.06 1.89 7.58 -2.39 -0.02 1.87 16 8 C -0.16 -3.73 9.48 71.98 0.68 -3.05 16 9 N -0.72 -22.99 4.48 -445.58 -2.00 -24.98 16 10 C 0.57 24.32 7.73 86.73 0.67 24.99 16 11 O -0.61 -29.42 15.98 -3.97 -0.06 -29.48 16 12 C -0.29 -13.58 5.89 -19.93 -0.12 -13.70 16 13 C -0.05 -2.33 9.47 22.25 0.21 -2.12 16 14 C -0.20 -9.80 8.64 22.47 0.19 -9.61 16 15 C 0.10 5.33 5.58 -21.28 -0.12 5.21 16 16 C -0.47 -24.15 9.04 23.46 0.21 -23.94 16 17 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 18 C 0.04 1.78 5.14 85.35 0.44 2.22 16 19 N -0.80 -38.16 10.95 21.87 0.24 -37.92 16 20 Si 0.99 34.84 29.60 68.60 2.03 36.87 16 21 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 22 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 23 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 24 C -0.25 -12.86 9.73 22.47 0.22 -12.65 16 25 C -0.03 -1.67 9.52 22.25 0.21 -1.46 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.05 1.16 7.75 -2.38 -0.02 1.14 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.40 11.40 6.60 -92.71 -0.61 10.79 16 41 H 0.12 4.40 6.37 -2.91 -0.02 4.39 16 42 H 0.11 5.71 6.16 -2.91 -0.02 5.69 16 43 H 0.30 12.54 8.29 -92.70 -0.77 11.77 16 44 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 45 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -61.25 368.24 4.63 -56.62 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: 0.35 Total: 38.88 kcal Atomic # 6 Polarization: -44.06 SS G_CDS: 4.07 Total: -39.99 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -1.76 Total: -62.91 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.06 Total: -29.48 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Total: -61.25 4.63 -56.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270306086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.012 kcal (2) G-P(sol) polarization free energy of solvation -61.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds