Wall clock time and date at job start Tue Mar 31 2020 06:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 C 1.53003 * 109.46938 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46938 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47149 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47181 * 305.00303 * 6 5 4 8 8 C 1.53002 * 109.47253 * 184.99804 * 6 5 4 9 9 N 1.46502 * 109.46850 * 64.99620 * 6 5 4 10 10 C 1.34772 * 120.00202 * 204.99975 * 9 6 5 11 11 O 1.21588 * 119.99777 * 0.02562 * 10 9 6 12 12 C 1.47641 * 120.00583 * 180.02562 * 10 9 6 13 13 C 1.40009 * 119.89929 * 180.02562 * 12 10 9 14 14 C 1.36318 * 120.10527 * 180.23586 * 13 12 10 15 15 C 1.40888 * 119.89403 * 359.51171 * 14 13 12 16 16 C 1.41102 * 120.10571 * 180.23499 * 15 14 13 17 17 H 1.08005 * 120.00068 * 205.22706 * 16 15 14 18 18 C 1.40227 * 120.00064 * 25.22625 * 16 15 14 19 19 N 1.30649 * 119.99877 * 17.91903 * 18 16 15 20 20 Si 1.86800 * 120.00142 * 197.91775 * 18 16 15 21 21 H 1.48500 * 109.47039 * 94.53086 * 20 18 16 22 22 H 1.48503 * 109.47462 * 214.52643 * 20 18 16 23 23 H 1.48498 * 109.47411 * 334.52923 * 20 18 16 24 24 C 1.40894 * 119.79034 * 0.48369 * 15 14 13 25 25 C 1.36312 * 119.89177 * 359.75095 * 24 15 14 26 26 H 1.09003 * 109.47163 * 59.99687 * 1 2 3 27 27 H 1.08993 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46779 * 300.00517 * 1 2 3 29 29 H 1.09004 * 109.47155 * 239.99857 * 2 1 3 30 30 H 1.09001 * 109.46933 * 119.99818 * 2 1 3 31 31 H 1.08993 * 109.47549 * 60.00257 * 3 2 1 32 32 H 1.09001 * 109.47054 * 299.99744 * 3 2 1 33 33 H 1.08993 * 109.47211 * 59.99535 * 4 3 2 34 34 H 1.09001 * 109.46619 * 299.99496 * 4 3 2 35 35 H 1.09001 * 109.47702 * 59.99534 * 5 4 3 36 36 H 1.09001 * 109.47054 * 299.99229 * 5 4 3 37 37 H 1.08996 * 109.46825 * 180.02562 * 8 6 5 38 38 H 1.09003 * 109.46943 * 299.99903 * 8 6 5 39 39 H 1.08993 * 109.47120 * 60.00036 * 8 6 5 40 40 H 0.97003 * 120.00032 * 25.00480 * 9 6 5 41 41 H 1.07999 * 119.94461 * 359.94926 * 13 12 10 42 42 H 1.08006 * 120.05121 * 179.74851 * 14 13 12 43 43 H 0.96994 * 119.99882 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.04953 * 179.72524 * 24 15 14 45 45 H 1.07997 * 119.94726 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6101 2.8849 -0.0013 7 1 5.9734 2.2958 0.8407 8 6 6.1201 4.3220 0.1237 9 7 6.0984 2.3005 -1.2528 10 6 7.3203 1.7339 -1.3004 11 8 8.0172 1.7074 -0.3045 12 6 7.8127 1.1455 -2.5618 13 6 9.0822 0.5570 -2.6086 14 6 9.5429 0.0167 -3.7722 15 6 8.7353 0.0420 -4.9263 16 6 9.2058 -0.5204 -6.1319 17 1 8.8191 -0.1710 -7.0779 18 6 10.1754 -1.5330 -6.1018 19 7 10.3910 -2.1984 -4.9983 20 14 11.1588 -1.9304 -7.6394 21 1 12.4394 -1.1789 -7.6160 22 1 11.4411 -3.3877 -7.6836 23 1 10.3781 -1.5408 -8.8409 24 6 7.4584 0.6353 -4.8743 25 6 7.0082 1.1772 -3.7074 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8907 34 1 3.9337 0.9285 0.8892 35 1 3.7171 3.3991 0.8886 36 1 3.7165 3.3984 -0.8914 37 1 7.2101 4.3219 0.1233 38 1 5.7568 4.9110 -0.7184 39 1 5.7569 4.7567 1.0548 40 1 5.5422 2.3214 -2.0473 41 1 9.6993 0.5352 -1.7225 42 1 10.5241 -0.4335 -3.8083 43 1 11.0614 -2.8990 -4.9776 44 1 6.8376 0.6609 -5.7576 45 1 6.0298 1.6326 -3.6666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270306090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:49 Heat of formation + Delta-G solvation = -63.778117 kcal Electronic energy + Delta-G solvation = -22285.492108 eV Core-core repulsion = 19072.715094 eV Total energy + Delta-G solvation = -3212.777014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.29830 -37.42775 -36.56186 -34.94105 -33.86848 -31.91724 -30.49414 -29.82372 -29.14071 -26.48286 -25.84085 -22.82384 -21.98146 -21.12172 -21.04444 -20.28171 -19.63623 -17.51440 -16.81432 -16.13280 -15.51143 -15.32486 -14.43370 -14.15639 -14.03126 -13.94609 -13.80337 -13.47779 -13.24140 -12.91255 -12.73700 -12.38555 -12.20205 -12.11490 -12.00727 -11.79723 -11.67759 -11.37694 -11.24228 -11.17283 -11.00627 -10.96269 -10.79135 -10.62318 -10.57259 -10.38613 -10.02112 -9.51914 -9.32928 -8.91749 -8.54383 -7.68276 -7.54565 -7.00572 -4.58606 2.26326 2.92628 2.97006 2.99851 3.04755 3.75695 3.84755 3.91229 4.52204 4.59515 4.79180 4.89086 5.05635 5.12334 5.17288 5.40373 5.52289 5.55737 5.58123 5.60575 5.68403 5.75929 5.80913 5.88677 5.89838 5.95113 5.97116 6.01299 6.11357 6.20465 6.28996 6.32968 6.34881 6.41688 6.82216 6.85644 7.04863 7.08948 7.14000 7.45618 7.63531 7.81047 7.89927 8.07261 8.30811 8.44926 8.64726 8.77292 9.13834 9.91795 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.003207 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.588460 B = 8727.680265 C = 9765.276159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.122 4.122 5 C -0.124 4.124 6 C 0.143 3.857 7 H 0.083 0.917 8 C -0.162 4.162 9 N -0.736 5.736 10 C 0.572 3.428 11 O -0.574 6.574 12 C -0.282 4.282 13 C -0.036 4.036 14 C -0.183 4.183 15 C 0.129 3.871 16 C -0.445 4.445 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.770 5.770 20 Si 0.913 3.087 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.235 4.235 25 C -0.049 4.049 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.394 0.606 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.287 0.713 44 H 0.096 0.904 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.550 5.536 5.456 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.160 4.160 5 C -0.162 4.162 6 C 0.038 3.962 7 H 0.101 0.899 8 C -0.220 4.220 9 N -0.389 5.389 10 C 0.366 3.634 11 O -0.456 6.456 12 C -0.287 4.287 13 C -0.055 4.055 14 C -0.202 4.202 15 C 0.126 3.874 16 C -0.473 4.473 17 H 0.102 0.898 18 C -0.147 4.147 19 N -0.393 5.393 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.255 4.255 25 C -0.068 4.068 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.229 0.771 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.114 0.886 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.934 5.310 6.278 14.493 hybrid contribution 0.128 -0.280 -1.034 1.079 sum -11.806 5.030 5.244 13.863 Atomic orbital electron populations 1.21776 0.96138 1.01453 1.01570 1.21553 0.95565 0.97145 1.02261 1.21615 0.95600 0.96626 1.01711 1.21622 0.94867 0.96610 1.02870 1.21888 0.94474 0.97373 1.02503 1.20816 0.92745 0.94072 0.88589 0.89939 1.22178 1.02327 0.96385 1.01151 1.45995 1.18686 1.61606 1.12603 1.18582 0.79973 0.76088 0.88737 1.90630 1.56908 1.60776 1.37290 1.18943 0.99467 1.17535 0.92750 1.20480 0.93664 0.94307 0.97096 1.21001 1.00869 1.05393 0.92936 1.17776 0.89532 0.87187 0.92949 1.19837 1.17684 1.15427 0.94323 0.89764 1.26100 0.95902 0.94763 0.97984 1.69753 1.26151 1.15101 1.28278 0.86206 0.80289 0.78296 0.81515 1.18996 1.19995 1.18284 1.20667 0.97291 1.10502 0.97017 1.20354 0.96408 0.96974 0.93083 0.92830 0.92913 0.92974 0.91835 0.92111 0.92301 0.92139 0.91395 0.91968 0.90934 0.91636 0.91994 0.92803 0.92357 0.77068 0.88233 0.86287 0.90198 0.88553 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.17 5.93 -26.73 -0.16 -1.33 16 3 C -0.12 -1.07 5.21 -26.73 -0.14 -1.21 16 4 C -0.12 -1.31 5.10 -26.73 -0.14 -1.45 16 5 C -0.12 -1.28 4.75 -26.73 -0.13 -1.41 16 6 C 0.14 1.96 2.58 -67.93 -0.17 1.79 16 7 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 8 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 9 N -0.74 -11.96 4.48 -54.81 -0.25 -12.21 16 10 C 0.57 12.13 7.73 -12.42 -0.10 12.03 16 11 O -0.57 -13.82 15.98 5.29 0.08 -13.74 16 12 C -0.28 -6.47 5.89 -104.73 -0.62 -7.09 16 13 C -0.04 -0.89 9.52 -39.61 -0.38 -1.27 16 14 C -0.18 -4.71 8.63 -39.27 -0.34 -5.05 16 15 C 0.13 3.29 5.57 -106.80 -0.59 2.70 16 16 C -0.45 -11.11 9.04 -37.75 -0.34 -11.46 16 17 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 18 C 0.07 1.75 5.13 -17.31 -0.09 1.66 16 19 N -0.77 -18.96 11.00 55.56 0.61 -18.34 16 20 Si 0.91 17.50 29.60 -169.99 -5.03 12.46 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 24 C -0.24 -5.45 9.73 -39.27 -0.38 -5.83 16 25 C -0.05 -1.04 9.47 -39.61 -0.38 -1.42 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.39 5.69 6.60 -40.82 -0.27 5.42 16 41 H 0.10 2.44 7.63 -52.49 -0.40 2.04 16 42 H 0.12 3.13 6.20 -52.48 -0.33 2.81 16 43 H 0.29 6.36 8.29 -40.82 -0.34 6.02 16 44 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 45 H 0.09 1.54 6.37 -52.49 -0.33 1.21 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -28.07 368.31 -9.85 -37.93 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -7.59 Total: 10.24 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -3.23 Total: -21.89 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.37 Total: -30.55 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.74 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.07 -9.85 -37.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270306090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.852 kcal (2) G-P(sol) polarization free energy of solvation -28.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds