Wall clock time and date at job start Tue Mar 31 2020 06:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 C 1.53003 * 109.46938 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46938 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47149 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47181 * 305.00303 * 6 5 4 8 8 C 1.53002 * 109.47253 * 184.99804 * 6 5 4 9 9 N 1.46502 * 109.46850 * 64.99620 * 6 5 4 10 10 C 1.34772 * 120.00202 * 204.99975 * 9 6 5 11 11 O 1.21588 * 119.99777 * 0.02562 * 10 9 6 12 12 C 1.47641 * 120.00583 * 180.02562 * 10 9 6 13 13 C 1.40009 * 119.89929 * 180.02562 * 12 10 9 14 14 C 1.36318 * 120.10527 * 180.23586 * 13 12 10 15 15 C 1.40888 * 119.89403 * 359.51171 * 14 13 12 16 16 C 1.41102 * 120.10571 * 180.23499 * 15 14 13 17 17 H 1.08005 * 120.00068 * 205.22706 * 16 15 14 18 18 C 1.40227 * 120.00064 * 25.22625 * 16 15 14 19 19 N 1.30649 * 119.99877 * 17.91903 * 18 16 15 20 20 Si 1.86800 * 120.00142 * 197.91775 * 18 16 15 21 21 H 1.48500 * 109.47039 * 94.53086 * 20 18 16 22 22 H 1.48503 * 109.47462 * 214.52643 * 20 18 16 23 23 H 1.48498 * 109.47411 * 334.52923 * 20 18 16 24 24 C 1.40894 * 119.79034 * 0.48369 * 15 14 13 25 25 C 1.36312 * 119.89177 * 359.75095 * 24 15 14 26 26 H 1.09003 * 109.47163 * 59.99687 * 1 2 3 27 27 H 1.08993 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46779 * 300.00517 * 1 2 3 29 29 H 1.09004 * 109.47155 * 239.99857 * 2 1 3 30 30 H 1.09001 * 109.46933 * 119.99818 * 2 1 3 31 31 H 1.08993 * 109.47549 * 60.00257 * 3 2 1 32 32 H 1.09001 * 109.47054 * 299.99744 * 3 2 1 33 33 H 1.08993 * 109.47211 * 59.99535 * 4 3 2 34 34 H 1.09001 * 109.46619 * 299.99496 * 4 3 2 35 35 H 1.09001 * 109.47702 * 59.99534 * 5 4 3 36 36 H 1.09001 * 109.47054 * 299.99229 * 5 4 3 37 37 H 1.08996 * 109.46825 * 180.02562 * 8 6 5 38 38 H 1.09003 * 109.46943 * 299.99903 * 8 6 5 39 39 H 1.08993 * 109.47120 * 60.00036 * 8 6 5 40 40 H 0.97003 * 120.00032 * 25.00480 * 9 6 5 41 41 H 1.07999 * 119.94461 * 359.94926 * 13 12 10 42 42 H 1.08006 * 120.05121 * 179.74851 * 14 13 12 43 43 H 0.96994 * 119.99882 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.04953 * 179.72524 * 24 15 14 45 45 H 1.07997 * 119.94726 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6101 2.8849 -0.0013 7 1 5.9734 2.2958 0.8407 8 6 6.1201 4.3220 0.1237 9 7 6.0984 2.3005 -1.2528 10 6 7.3203 1.7339 -1.3004 11 8 8.0172 1.7074 -0.3045 12 6 7.8127 1.1455 -2.5618 13 6 9.0822 0.5570 -2.6086 14 6 9.5429 0.0167 -3.7722 15 6 8.7353 0.0420 -4.9263 16 6 9.2058 -0.5204 -6.1319 17 1 8.8191 -0.1710 -7.0779 18 6 10.1754 -1.5330 -6.1018 19 7 10.3910 -2.1984 -4.9983 20 14 11.1588 -1.9304 -7.6394 21 1 12.4394 -1.1789 -7.6160 22 1 11.4411 -3.3877 -7.6836 23 1 10.3781 -1.5408 -8.8409 24 6 7.4584 0.6353 -4.8743 25 6 7.0082 1.1772 -3.7074 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8907 34 1 3.9337 0.9285 0.8892 35 1 3.7171 3.3991 0.8886 36 1 3.7165 3.3984 -0.8914 37 1 7.2101 4.3219 0.1233 38 1 5.7568 4.9110 -0.7184 39 1 5.7569 4.7567 1.0548 40 1 5.5422 2.3214 -2.0473 41 1 9.6993 0.5352 -1.7225 42 1 10.5241 -0.4335 -3.8083 43 1 11.0614 -2.8990 -4.9776 44 1 6.8376 0.6609 -5.7576 45 1 6.0298 1.6326 -3.6666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270306090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:48 Heat of formation + Delta-G solvation = -77.082704 kcal Electronic energy + Delta-G solvation = -22286.069038 eV Core-core repulsion = 19072.715094 eV Total energy + Delta-G solvation = -3213.353944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89291 -39.07741 -37.78134 -35.99300 -35.68454 -33.17969 -31.93741 -31.47029 -30.67850 -27.68093 -27.24325 -24.18775 -23.29004 -22.75735 -21.81343 -21.56754 -21.26867 -19.35129 -18.44972 -17.32841 -17.09264 -16.43370 -15.87307 -15.74199 -15.50639 -15.19799 -14.80604 -14.77649 -14.55389 -14.37061 -14.00353 -13.83304 -13.73214 -13.35022 -13.20562 -12.95823 -12.82993 -12.81851 -12.62375 -12.50384 -12.36318 -12.04377 -11.77788 -11.76616 -11.66550 -11.36350 -11.34102 -11.26680 -11.13409 -10.65108 -9.99463 -9.56754 -9.40106 -8.79089 -6.48154 0.45687 1.15111 1.37639 1.42968 1.53394 2.13194 2.18527 2.45842 2.80471 3.65865 3.69862 4.02576 4.04495 4.20898 4.28833 4.32841 4.34704 4.39269 4.41061 4.50111 4.67207 4.77689 4.80009 4.86767 4.95274 4.96644 4.99610 5.02529 5.09278 5.10133 5.18891 5.23938 5.26482 5.28371 5.32970 5.40879 5.47943 5.55719 5.58863 5.73519 5.79246 5.97284 6.02224 6.20562 6.56196 6.76931 6.78894 6.90210 7.51311 8.16485 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.003207 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.588460 B = 8727.680265 C = 9765.276159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.111 4.111 4 C -0.122 4.122 5 C -0.113 4.113 6 C 0.138 3.862 7 H 0.058 0.942 8 C -0.157 4.157 9 N -0.715 5.715 10 C 0.571 3.429 11 O -0.610 6.610 12 C -0.293 4.293 13 C -0.051 4.051 14 C -0.204 4.204 15 C 0.101 3.899 16 C -0.473 4.473 17 H 0.092 0.908 18 C 0.033 3.967 19 N -0.805 5.805 20 Si 0.989 3.011 21 H -0.263 1.263 22 H -0.267 1.267 23 H -0.250 1.250 24 C -0.246 4.246 25 C -0.037 4.037 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.028 0.972 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.406 0.594 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.295 0.705 44 H 0.116 0.884 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.908 6.788 4.637 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.149 4.149 4 C -0.160 4.160 5 C -0.150 4.150 6 C 0.034 3.966 7 H 0.076 0.924 8 C -0.215 4.215 9 N -0.368 5.368 10 C 0.364 3.636 11 O -0.494 6.494 12 C -0.297 4.297 13 C -0.071 4.071 14 C -0.223 4.223 15 C 0.098 3.902 16 C -0.500 4.500 17 H 0.110 0.890 18 C -0.185 4.185 19 N -0.428 5.428 20 Si 0.809 3.191 21 H -0.188 1.188 22 H -0.191 1.191 23 H -0.174 1.174 24 C -0.265 4.265 25 C -0.055 4.055 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.244 0.756 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.106 0.894 44 H 0.134 0.866 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.347 6.585 5.462 16.704 hybrid contribution 0.798 -0.646 -0.670 1.226 sum -13.549 5.939 4.792 15.550 Atomic orbital electron populations 1.21758 0.95025 1.01781 1.02166 1.21576 0.96584 0.97288 1.01453 1.21561 0.94009 0.96578 1.02713 1.21606 0.96282 0.96699 1.01406 1.21839 0.91236 0.97380 1.04561 1.21057 0.95257 0.94055 0.86275 0.92365 1.22133 1.00182 0.95867 1.03354 1.45843 1.16857 1.59839 1.14211 1.18403 0.81267 0.76373 0.87570 1.90610 1.58349 1.62296 1.38191 1.19234 0.98987 1.17098 0.94399 1.20544 0.94900 0.95140 0.96472 1.20925 1.00701 1.06774 0.93900 1.18137 0.90720 0.88188 0.93130 1.20151 1.19168 1.16289 0.94439 0.88979 1.27025 0.96263 0.94024 1.01219 1.69808 1.26854 1.15700 1.30479 0.85077 0.78407 0.78283 0.77355 1.18761 1.19144 1.17357 1.20947 0.96685 1.10377 0.98480 1.20684 0.97739 0.95578 0.91530 0.92391 0.92812 0.92181 0.92992 0.92689 0.91051 0.91256 0.93192 0.93250 0.88548 0.89778 0.95281 0.91205 0.89655 0.75646 0.89305 0.88015 0.89419 0.86577 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.36 16 2 C -0.13 -2.21 5.93 30.59 0.18 -2.03 16 3 C -0.11 -1.71 5.21 30.59 0.16 -1.55 16 4 C -0.12 -2.38 5.10 30.59 0.16 -2.23 16 5 C -0.11 -1.95 4.75 30.59 0.15 -1.80 16 6 C 0.14 3.54 2.58 44.99 0.12 3.65 16 7 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 8 C -0.16 -3.68 9.48 71.98 0.68 -3.00 16 9 N -0.72 -22.18 4.48 -445.59 -2.00 -24.17 16 10 C 0.57 24.28 7.73 86.73 0.67 24.95 16 11 O -0.61 -30.17 15.98 -3.99 -0.06 -30.23 16 12 C -0.29 -13.53 5.89 -19.93 -0.12 -13.64 16 13 C -0.05 -2.65 9.52 22.25 0.21 -2.43 16 14 C -0.20 -10.99 8.63 22.47 0.19 -10.80 16 15 C 0.10 5.30 5.57 -21.28 -0.12 5.18 16 16 C -0.47 -23.95 9.04 23.46 0.21 -23.74 16 17 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 18 C 0.03 1.59 5.13 85.35 0.44 2.02 16 19 N -0.80 -40.77 11.00 21.87 0.24 -40.53 16 20 Si 0.99 35.70 29.60 68.60 2.03 37.73 16 21 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 22 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 24 C -0.25 -11.22 9.73 22.47 0.22 -11.00 16 25 C -0.04 -1.51 9.47 22.25 0.21 -1.30 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.15 7.75 -2.39 -0.02 1.13 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.41 10.55 6.60 -92.71 -0.61 9.94 16 41 H 0.09 4.65 7.63 -2.91 -0.02 4.63 16 42 H 0.10 5.71 6.20 -2.91 -0.02 5.69 16 43 H 0.29 13.40 8.29 -92.71 -0.77 12.63 16 44 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 45 H 0.13 4.18 6.37 -2.91 -0.02 4.17 16 Total: -1.00 -63.66 368.31 4.63 -59.03 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: 0.35 Total: 37.26 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 4.07 Total: -39.08 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -1.75 Total: -64.71 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.06 Total: -30.23 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Total: -63.66 4.63 -59.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270306090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.056 kcal (2) G-P(sol) polarization free energy of solvation -63.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds