Wall clock time and date at job start Tue Mar 31 2020 06:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47217 * 2 1 4 4 C 1.53003 * 109.47040 * 184.99930 * 3 2 1 5 5 C 1.53003 * 109.47058 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47547 * 64.99705 * 3 2 1 7 7 C 1.52992 * 109.47115 * 59.99875 * 6 3 2 8 8 N 1.46503 * 109.46508 * 304.99433 * 3 2 1 9 9 C 1.34776 * 120.00206 * 299.99738 * 8 3 2 10 10 O 1.21584 * 119.99995 * 0.02562 * 9 8 3 11 11 C 1.47645 * 119.99781 * 180.02562 * 9 8 3 12 12 C 1.40015 * 119.89622 * 180.02562 * 11 9 8 13 13 C 1.36312 * 120.10903 * 180.25483 * 12 11 9 14 14 C 1.40889 * 119.89023 * 359.51799 * 13 12 11 15 15 C 1.41106 * 120.10458 * 180.23341 * 14 13 12 16 16 H 1.08007 * 120.00193 * 204.78818 * 15 14 13 17 17 C 1.40223 * 120.00235 * 24.78377 * 15 14 13 18 18 N 1.30654 * 119.99604 * 17.73952 * 17 15 14 19 19 Si 1.86796 * 120.00554 * 197.73682 * 17 15 14 20 20 H 1.48507 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47125 * 119.99967 * 19 17 15 22 22 H 1.48490 * 109.47417 * 240.00293 * 19 17 15 23 23 C 1.40894 * 119.79412 * 0.49663 * 14 13 12 24 24 C 1.36312 * 119.88940 * 359.73804 * 23 14 13 25 25 H 1.09002 * 109.47470 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47478 * 300.00427 * 1 2 3 27 27 H 1.09005 * 109.46978 * 60.00213 * 1 2 3 28 28 H 1.08998 * 109.47478 * 239.99573 * 2 1 3 29 29 H 1.09000 * 109.46839 * 119.99324 * 2 1 3 30 30 H 1.08999 * 109.47101 * 299.99590 * 4 3 2 31 31 H 1.09005 * 109.47364 * 59.99807 * 4 3 2 32 32 H 1.08999 * 109.47152 * 299.99954 * 5 4 3 33 33 H 1.08997 * 109.47068 * 59.99646 * 5 4 3 34 34 H 1.09000 * 109.46934 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47359 * 180.02562 * 6 3 2 36 36 H 1.09009 * 109.46766 * 300.00055 * 6 3 2 37 37 H 1.09000 * 109.47220 * 60.00191 * 7 6 3 38 38 H 1.09005 * 109.47343 * 179.97438 * 7 6 3 39 39 H 1.09003 * 109.47914 * 300.00442 * 7 6 3 40 40 H 0.97004 * 119.99715 * 120.00787 * 8 3 2 41 41 H 1.08001 * 119.94049 * 359.96968 * 12 11 9 42 42 H 1.08000 * 120.05443 * 179.71603 * 13 12 11 43 43 H 0.97000 * 119.99671 * 179.97438 * 18 17 15 44 44 H 1.07998 * 120.05459 * 179.70916 * 23 14 13 45 45 H 1.08002 * 119.94993 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1257 5 6 4.0748 2.8868 -0.1264 6 6 1.6352 2.1267 1.3072 7 6 2.2452 1.3701 2.4889 8 7 1.4559 2.1669 -1.1316 9 6 1.6793 1.7425 -2.3911 10 8 2.3653 0.7582 -2.5882 11 6 1.0911 2.4729 -3.5314 12 6 1.3242 2.0298 -4.8390 13 6 0.7875 2.7039 -5.8953 14 6 -0.0112 3.8422 -5.6691 15 6 -0.5731 4.5405 -6.7590 16 1 -0.8297 5.5846 -6.6569 17 6 -0.7983 3.8788 -7.9746 18 7 -0.8234 2.5731 -8.0128 19 14 -1.0623 4.8641 -9.5395 20 1 -0.9863 6.3146 -9.2299 21 1 -0.0112 4.5138 -10.5283 22 1 -2.3986 4.5474 -10.1043 23 6 -0.2427 4.2844 -4.3516 24 6 0.3022 3.6066 -3.3019 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 3.9994 0.9053 0.7161 31 1 3.8533 0.9569 -1.0571 32 1 3.6402 3.4255 -0.9684 33 1 3.7864 3.3746 0.8048 34 1 5.1612 2.8881 -0.2154 35 1 1.9982 3.1544 1.3070 36 1 0.5488 2.1254 1.3967 37 1 3.3315 1.3714 2.3994 38 1 1.9572 1.8578 3.4203 39 1 1.8819 0.3424 2.4890 40 1 0.9084 2.9520 -0.9742 41 1 1.9340 1.1552 -5.0112 42 1 0.9717 2.3640 -6.9038 43 1 -0.9795 2.1154 -8.8536 44 1 -0.8505 5.1592 -4.1736 45 1 0.1257 3.9450 -2.2916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270334962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:32 Heat of formation + Delta-G solvation = -43.462691 kcal Electronic energy + Delta-G solvation = -23524.032013 eV Core-core repulsion = 20312.135942 eV Total energy + Delta-G solvation = -3211.896071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01440 -37.76737 -36.46546 -33.87062 -32.47896 -32.00652 -30.74257 -29.94542 -29.37162 -26.48797 -25.36894 -24.14834 -21.95247 -21.77287 -20.92939 -19.52754 -18.57501 -17.47224 -17.01080 -15.61179 -15.56605 -15.17341 -14.83849 -14.53093 -13.96668 -13.40201 -13.22325 -13.21436 -13.00679 -12.67446 -12.61833 -12.53397 -12.20568 -12.10898 -11.92447 -11.72317 -11.38191 -11.36517 -11.22507 -11.20987 -10.95443 -10.80670 -10.71413 -10.61852 -10.22174 -10.14636 -9.99033 -9.52042 -9.31495 -8.68637 -8.43533 -7.67536 -7.53641 -7.00042 -4.57984 2.27667 2.91822 2.96764 3.01976 3.05120 3.75931 3.82407 3.93016 4.60211 4.75636 4.92809 5.02540 5.32437 5.33262 5.44744 5.54104 5.60360 5.61831 5.67289 5.68807 5.82837 5.86589 5.96469 5.99944 6.08827 6.13212 6.15373 6.26867 6.30057 6.32459 6.44794 6.48646 6.59607 6.67849 6.82486 6.86717 7.09253 7.11138 7.19443 7.46232 7.64557 7.83064 7.90990 8.08053 8.35388 8.45929 8.65477 8.78072 9.19065 9.91935 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032650 B = 0.003472 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.375850 B = 8063.082102 C = 8147.072355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.185 3.815 4 C -0.137 4.137 5 C -0.148 4.148 6 C -0.130 4.130 7 C -0.150 4.150 8 N -0.732 5.732 9 C 0.576 3.424 10 O -0.568 6.568 11 C -0.282 4.282 12 C -0.036 4.036 13 C -0.183 4.183 14 C 0.128 3.872 15 C -0.445 4.445 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.770 5.770 19 Si 0.912 3.088 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.272 1.272 23 C -0.236 4.236 24 C -0.050 4.050 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.393 0.607 41 H 0.099 0.901 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.096 0.904 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 -0.181 13.036 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.099 3.901 4 C -0.175 4.175 5 C -0.205 4.205 6 C -0.167 4.167 7 C -0.208 4.208 8 N -0.384 5.384 9 C 0.371 3.629 10 O -0.450 6.450 11 C -0.287 4.287 12 C -0.056 4.056 13 C -0.202 4.202 14 C 0.125 3.875 15 C -0.473 4.473 16 H 0.102 0.898 17 C -0.147 4.147 18 N -0.393 5.393 19 Si 0.736 3.264 20 H -0.181 1.181 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.255 4.255 24 C -0.069 4.069 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.228 0.772 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.097 0.903 44 H 0.114 0.886 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.340 -1.084 12.743 13.218 hybrid contribution -0.560 0.767 -0.644 1.147 sum 2.780 -0.317 12.099 12.419 Atomic orbital electron populations 1.21725 0.95995 1.00980 1.01724 1.21973 0.96116 0.96342 1.02991 1.20179 0.92786 0.91815 0.85343 1.21973 0.94601 0.97501 1.03408 1.21750 1.00175 0.97030 1.01563 1.21817 1.01141 0.99848 0.93938 1.21837 1.01264 1.00602 0.97091 1.45995 1.54669 1.32243 1.05458 1.18459 0.78932 0.83238 0.82309 1.90566 1.41112 1.27920 1.85412 1.18979 1.14106 1.03008 0.92576 1.20476 0.96416 0.97157 0.91540 1.21010 1.01577 0.99536 0.98069 1.17777 0.87423 0.90644 0.91674 1.19853 1.34323 0.98128 0.94949 0.89793 1.26098 0.92503 0.94934 1.01210 1.69762 1.31628 1.09044 1.28885 0.86186 0.78796 0.81115 0.80323 1.18106 1.19382 1.19700 1.20662 1.08158 1.03907 0.92797 1.20357 0.95627 0.94255 0.96678 0.93424 0.93285 0.92269 0.89703 0.91913 0.91943 0.89546 0.92389 0.93154 0.93412 0.91315 0.91400 0.92216 0.92859 0.92184 0.77220 0.88266 0.86263 0.90267 0.88626 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.45 37.16 0.35 -1.63 16 2 C -0.14 -1.91 4.46 -26.73 -0.12 -2.03 16 3 C 0.19 2.49 0.22 -131.82 -0.03 2.46 16 4 C -0.14 -1.89 4.43 -26.73 -0.12 -2.01 16 5 C -0.15 -1.91 9.40 37.16 0.35 -1.56 16 6 C -0.13 -1.37 4.51 -26.74 -0.12 -1.49 16 7 C -0.15 -1.35 9.21 37.15 0.34 -1.01 16 8 N -0.73 -11.56 3.36 -48.60 -0.16 -11.72 16 9 C 0.58 11.69 6.97 -12.42 -0.09 11.61 16 10 O -0.57 -12.82 12.58 5.29 0.07 -12.75 16 11 C -0.28 -6.35 5.89 -104.72 -0.62 -6.96 16 12 C -0.04 -0.89 9.52 -39.61 -0.38 -1.27 16 13 C -0.18 -4.68 8.63 -39.27 -0.34 -5.02 16 14 C 0.13 3.27 5.57 -106.80 -0.60 2.67 16 15 C -0.44 -11.12 9.04 -37.75 -0.34 -11.46 16 16 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 17 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 18 N -0.77 -18.94 10.96 55.56 0.61 -18.33 16 19 Si 0.91 17.49 29.60 -169.99 -5.03 12.46 16 20 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 21 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 22 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 23 C -0.24 -5.45 9.73 -39.27 -0.38 -5.83 16 24 C -0.05 -1.06 9.47 -39.61 -0.38 -1.43 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.57 6.56 -51.93 -0.34 0.23 16 27 H 0.06 0.94 7.29 -51.93 -0.38 0.56 16 28 H 0.08 1.47 6.32 -51.93 -0.33 1.14 16 29 H 0.06 0.75 6.17 -51.93 -0.32 0.43 16 30 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 31 H 0.09 1.49 6.16 -51.93 -0.32 1.17 16 32 H 0.06 0.86 7.60 -51.93 -0.39 0.46 16 33 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 36 H 0.07 0.70 6.57 -51.92 -0.34 0.36 16 37 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.54 6.32 -51.93 -0.33 0.21 16 40 H 0.39 5.63 6.47 -40.82 -0.26 5.37 16 41 H 0.10 2.40 7.63 -52.49 -0.40 2.00 16 42 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 43 H 0.29 6.33 8.29 -40.82 -0.34 5.99 16 44 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 45 H 0.09 1.53 6.37 -52.49 -0.33 1.19 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -27.19 343.51 -8.54 -35.73 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.65 Total: 12.73 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -2.55 Total: -23.29 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.45 Total: -30.05 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.19 -8.54 -35.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270334962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.734 kcal (2) G-P(sol) polarization free energy of solvation -27.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds